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Homology
BLAST of mRNA_H-paniculata_contig1663.3749.1 vs. uniprot
Match: D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.160e-51 Identity = 111/177 (62.71%), Postives = 132/177 (74.58%), Query Frame = 1
Query: 64 MARFSALALLAVISSV-TAFVPSFAPANSITRSVSAQQPATCKPSVRMMAVEGAIAAP-TAESLKAMAEACQEDGCSVEAVSQLLDQLKSKKQELEMQLVTVDDVLTMMGDTSSLSEKGELEKLVMAVGRLFSPNDDDYPYLDYPTGWSGDISQDKKDAWDYNMNTPLKPVKPVYNK 588
MARFSA A LA+ +S TAFV A RS SA T RM A + AP TA+ LK MA +CQEDGCSVE VS LL+QLK+KK+ELEMQLVTVDDVLT+MGD+SSL+EKGELEKLV AVGR+FS ND Y+ +PTG+SG++++ +KDAWDYN+NTPLKPVKPVY K
Sbjct: 1 MARFSAFAFLAIFTSAATAFVTPLAGVQMGRRSASANVATT-----RMSASPAPMTAPPTAQELKDMALSCQEDGCSVETVSTLLNQLKTKKKELEMQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGT-DYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKK 171
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_004800.1 |
| Exons | 4 |
| Model size | 2154 |
| Cds size | 528 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1663.3749.1 >prot_H-paniculata_contig1663.3749.1 ID=prot_H-paniculata_contig1663.3749.1|Name=mRNA_H-paniculata_contig1663.3749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MARFSALALLAVISSVTAFVPSFAPANSITRSVSAQQPATCKPSVRMMAV EGAIAAPTAESLKAMAEACQEDGCSVEAVSQLLDQLKSKKQELEMQLVTV DDVLTMMGDTSSLSEKGELEKLVMAVGRLFSPNDDDYPYLDYPTGWSGDI SQDKKDAWDYNMNTPLKPVKPVYNK* back to topmRNA from alignment at H-paniculata_contig1663:13072..20233- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1663.3749.1 ID=mRNA_H-paniculata_contig1663.3749.1|Name=mRNA_H-paniculata_contig1663.3749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7162bp|location=Sequence derived from alignment at H-paniculata_contig1663:13072..20233- (Halopteris paniculata Hal_grac_a_UBK monoicous) CTGAACTACGACGTGCTCAGTTTGTAGAAGAGCATCGTACAAGACGGTAA
AGCGACAAAGAAGATGGCTCGGTTCTCTGCTCTTGCACTGTTGGCCGTGA
TCTCCTCGGTCACCGCGTTCGTTCCATCGTTCGCTCCCGCAAACAGTATC
ACACGCTCAGTATCGGCACAGCAGCCAGCGACTTGTAAGCCGTCTGTGCG
CATGATGGCAGTGGAAGGCGCAATAGCGGCTCCAACGGTAAGACCACGAA
CTGGGAAATGAGGGAATGGGGGATGGATTCGGGAGGTTGAGGGGTCGGGG
GGTGGATCGGTGAATTCTCGTACGTGTCCTTGTACTGGTTGGGGGTGACT
TGTAGTAGGACTTGGTGAAGGCTGGGTCAAGTTCAGCGTGTGATAATGGA
GTCCCCAGACAGCGCATGTAAATAACATTTTTTCAATTGGTACCGCTGAT
CCTGTGACTGTGACACTGACTTTTGCTGTGTTCATTTGTGTTCATGTTTG
TATTTTTTTTTCTTCTCATGTATTACCTGATGCAAGTGTCCTCCTTGGCG
TCATTTCGGGAACGGCAGCGGATTGGCGTGTCAACCTAGATGGATTGTTC
TGTAACATTGCAGCTGTAGTCACGACACGTGATTTTTGTCGGATTTGTCA
TAAATGAAAGATGTCACAAGTTGGGTTACACCCCCGTAGCTGTACTTGAT
TCAGCCGGGCCGCTTGCAATGAACAGGGCGCGAGAGGGTGATAGCCCGGT
GTCCCACATGAAGTAGTTGGTGACTGATGCATTGTACTATTGATTGTGTT
TTACTGACTGACTGTCATCGCCGTCCGTGAGTTCGCACGTCAACACGAGT
ATTCCAGCCTCGAAGATTCATTATGTAGGCTTCCCACACACTTACTCATA
AACTGCCATCTGCATCATTCTTTTAGCGAAGTCAAGGCGTTTGTAAAACA
TCATATGAATGAAGTTTGTAACGATGGTGTAGCTGTGATTATTTCGAACT
ATATGAAGTAGAGCATAAGTTTGTGCCTTGTGTGTGGTGGTGTCATGGCA
CGATTTGGCACCAAATCCAAGGTCCTAGTCACGATGACATGACCATCCGC
GAGCAGTTTGGTCGAATCTTTCGGTGCCACATTTCGTTCAACAAAAGTAC
AGTTGAGTGCTCGGTTGTCCAAACATGCACACACATGAAAACAGCATTCT
TGTATGATGTATGCATGACAGTTGGCCTTATCGCTCGTCCATAACTTTGG
TCGGACTGTAAATTTCACTGACGTGGACTCTTCTGTACTCGAGTATACAG
TACAGCACTGCCTGTGTGTGCCAAACGTGATACAGCTAATGGTCTCATCA
ACAGCAGCACGTGTTATGTGATATGGTTTATGTGTACTTGCGCCAGAGTG
ACACCGACCCAAGCAGTCATGTGCCGTCATATGTTAAACTCTACTCTAAT
CCCAAGATACCTCAAGTCAAGAACGTTTTAGTGTGGAATACTGACCTTGG
AATCTGCAAATATATCGTCGAAGTGGAGCATAGTAACAGCAGCAATTGTA
GATGGGGTGGTGAAAGCGTCACAGAAATATCTTATTGACGCCGCGCAGAC
GTCCACCCCAAGGGCGTTTTCCCGTCTTAACCTGCTTCGTATATCCATCA
AGGTTTTATCTCTGGCTAGTGAAGTTTCCTACACAACTCTTCACTGATTT
CCGCATTTCATTAGAATGGCCGTGGCCTATATGAGCCACTTCAGCCCGCG
TTAGGCGTCAACCTTCACCTTCTCAACTTTCCCAGCGCACCCACCTAATT
ATTCCAAACACAAGTAGCTGACAGTCTGGGGTTCTTGAAAATGTTGGTGG
GACAGAGGAGGGACTTGGACTAAGATCGGTGGCGTCTCAGCTGGGCAACT
CTGGCCTGGTGAAGATTGAAAATCACTATTACATGAAGTGGGATCCCCAG
ACTCCAGATCGCGGCGAACCGATTTAAGTTCACCTTGTTTTTGTTCCTCT
TCGCGAACGAATTATGAGGGGTTGCAACGTCTACTGTTGATATTTTTTGC
GGTGGTAACGCAAGACTGTATGGTGCATTGTTGTGTGTGATGGATTGCAT
TACGGCAAGGCCTAGTCTTTTTCCTTTTTTGCTGACTGAACAGGGTACAG
TCCGTTTCAAGATTGCTGAAGGCCGTATACCCCTTTTGTCTCTTGATCCT
ATGTTCCGTCCATATAGCGGACATCCGAATACCGATTTATCTCTCTTCGA
GTGGAGAACTGTGAAACTATATGCTTGATTCAAAATATATGAAGGCTTCG
CGTCGATGCATCATTCACCAGTACATTTTTTTCACACCGTGGACAAATGC
GAATACTGGCATACAGTTTTCACCAAAAAGTGAAGTGTTAGCCCAAGTTT
CAGGATGGGCGGATGCATGAAATAGAATACCTACCTGTATCTATTCGAGT
TACAAGTGTAAGTAGCATTCGTGGATGGTCTGGGGCACATCGACTACATG
AGTTTATTTTGATACTCAGGTCAATACTTTTCAGTTTTCCGTGAAAATCA
CATGTAAGTATTCGTAGGTGTAATAAATCTGCAGGCGTTGCCCGCTTCAC
CTAAATCATTCCCTGATGCGACATACCATAAGGAGGATTCTCATGGGCAG
TATGGCAATCGCTCTGAAGGGGTAAGAGGGTATTGGTAAACCATAACATT
TATACTGCGTGAGAAGACAAGTAAACACTAATATTTACGAGTACATGAAT
GTATACTAGAAGTCTTCTCATAAATTGTACTGTAGAAACAGAAAGATCTA
CCGATGTTCATGACCAAGACATAATCCATGCGTTTCTTGTCCTTTTACAT
TCATACACGCACAGTTAGAGAGCAGATCTCTACAAAATCTTCGCTAGTGT
CGATTGTCACTTGAAAACACATGGAAAACCAATAATGAAACATGATCACG
AAGGTGGTCTGCAGCCGCAAGTAAGATAGCTGCTCCAGTACGGGTAGTGT
TTGCATGATGTGCAGACGCAGAGTTGAGACCGTATCTTCCCCAGCAAAGC
TTGGCGTTACTGTCATGGTTGTTGGCATCTCAAAATTGACCTCCTGCACC
ACTTTAAACAGGATGTGCAGTGTTTTCAATGAAGCAAATAAACGTGGACG
TGAAATCTGTTTCGTTATTTACCTCAAAACGAACACCCGGGAAGGTGCGC
CAGCACTACAAAATCCAATACTTGAAGATGTGGGCGACCTTGGGACCGAT
TATCGAGCATTTCTTGAAGCATCGAGTGTCGAGGATGCTCGTACTGTCAT
TACTCAAACATCGACTATGAACGTAATCGATGGATGAAAACGCACTTAAT
AGAGGGAGAAAGGTTCGGTTTTAAGGCCCTGGACCGAGATATGACACCAC
CTTGCCCTGAAACTTGCGTTGGTGAGTATCAGTTCTTGTAGCTGTGTTCG
CGAGAGCAACATGTTTCGATGACTTCTTGGGGTTTGCGGTCATCCATCGA
TAAGACGACGAAAACCAGTGATGCAAACCTTGGAAGAACAAGACCGTTCG
CGAGTCGTACGGGTAATTTGAGTAGGGATGGATCGCGGTCATGTGTAATA
TCGATGTCGCTCGTGAGTATTGGTGCTTCGGCTCATGTAGATGCAGCTGG
ATCCACTGGACAGATGGGGGAAATACCGTTGAGAATACTAACGAGTTGGT
CTATACAGCTTATTAAAATCGGTTTCCGTACTCCCTCTCATTCCTCCTCC
ATGTTTATCGTGACGTATTTTGTGTTGAGCGCCTGTATTTTGACACGAAG
TATCTTTGGTGACATTTCCTGGTGCGACTCACTTTGTCAAATTTCTGACC
TCAGGCGGAATCGTTGAAAGCGATGGCTGAAGCTTGCCAAGAGGATGGCT
GCTCCGTTGAGGCCGTGAGCCAGCTGCTCGACCAGCTCAAGTCGAAAAAG
CAAGAACTCGAGGTAAACAGGTAGAAAATCGATAAGGCCTTGAAGACTGT
TTTGTACAAAGTCACTACAAGTATATGAAGCAAATAGATATTCAAAACCC
CAAATTTCAAGTTTTCCGAGGTAGTGATCGGTGTGCCAACGGGATCAATG
ATTATGATGAAGCGAAAATAGGATAGTCCAGTCGCAAATTTTGTTTTATA
CTTTCAACAATTTTACTCATCTTCATATTTTACTTTTGAGGCACAGCCGC
AGTGACGGGCAATGAAACCCGTTCGAATGTTATCTCTGTTAGCCGAATCT
TTCAAGGGTGTGTTCTGTAGGGTACCCACAAACCATACCGGGGGTAGTTA
CCGTCTGTAAGTACCCCACGGAGAACTTCTGTATGTTCTGTGGCAGTGCT
GGTACCCTACAGAGAACTTTTATGAAGTCTGTAACATTTCCAATACCCTA
CAGAACACACCCTTGGAATATTTCACATCTTCTCTCTAATTGGATAATGG
GGACAAGCCGCCCCTTGGGTGATGTCCCGCGCTTTCCTTGACTGGCACAA
GATAGATGCAAGCTCCGACATAACAAAAATGCAATGGTAGAAACACTGCA
GCTAACAATCGACTTCGAATTGCGTAATGCTGCTCGCATGTTGCCACAAC
CGTCATGGAGGGCCGTTCCAATCGCGTCCACATCCCGAAGCATCGTAAGC
TCGAAGTTCTCCGATCAGTGTGTTTTGTTGTAAATGTTGGCCACATTCCT
ATTCATGGTCATCAGTATATTTTCTACTGGAACTAATATCAATGGGGGAA
ATGAGCCACCTTATAGGAGATAAGGGTCCTTTCCCTTTCAACTTGATCCA
AATTTGCCTACAGCTTGATCTCATCATATAAACAGGCTAGCAAAGCTGAA
CTTTGTATTTTCGTTTATACGTTATCCTGGTTCCATCTCGTCTCACTGAT
TGTTCACGGGAGGATATGGAGTACACCAAACTATTACACGAACACTATAC
TGCTCTCGCCTCCACCCTGCCCCCATGTCGACAGATGCAACTTGTGACGG
TGGATGACGTGCTCACGATGATGGGCGACACCAGCTCGTTGAGCGAGAAG
GGCGAGTTAGAGAAGCTTGTGATGGCAGTCGGGCGTTTGTTCTCCCCGAA
CGACGACGACTACCCATACCTTGACTACCCCACTGGTTGGTCTGGGGACA
TCAGCCAGGTGACTAAAAAATGCTGGTGTTCGCGTGTACAAAACCCAATT
TTGAGTGTAAAACGGGTGATGAATTTTTTGCGAATAAAAATAAAACATGA
AGTAATTCTTGTCAATCCCCACAGGCTGGTCCGCATGTAGATTCCCTTCT
TGAAAGGTGCGTGGGTCAAACACAATTATCGGGACCATCGTATCAACCTC
AAGGGTATAGAGGCGTTCGCACATTCCAGCTGAGGGAGGAGGAGTAGGAG
GGGGCGTGGACGTGTGTGTTCAGCACCCACCCTTGGCCTTGCCCGTGTTA
TTGCCAGCTGTCTTTCGCATTTTCCTTGATTCTTCCCGTCGTGTGTTCCC
CAATTTTGTCATGTTTTTGCGCTCCAGGATAAGAAGGATGCTTGGGACTA
CAACATGAACACTCCATTGAAGCCCGTCAAGCCGGTTTACAACAAGTAGA
GGGATTTCCCGTGAAAAAACACACCAACTGTCCGGGGTGCACTGGGAGAA
GAGGGGGGGACGGGGGGGGAGCGTCATCGGCCCGGTCCGGAGCACGGCTT
TCCGTGTTGTTGTAAGATGGATGCACTCTGAAGCGCCCCGAGGGGGGCCG
AGGGGGGGGGGGGGAGGGGGGTGCAGTTGTGCTGCACCCATGTTGTCTTG
CTCTGAAAATGTGTAGGTAGAATAGTCGGCAGGTTCTTGAACTCATCCGG
GTGCAACATAAAATGAGCCCCTCTCTGATCTCCGCGAGTGTTTTTTCCCC
AATCATGAGTGTAGCATTTTTGATTCAAGTAAGGTACACCAAGTTGCGAT
AAACTTTTCCTGCCATAGGTTGTCGTGCGGGGAAAACGGGTTTTGCATAG
AAGAGGAGACGAAGGGTTGGGGGTATATGAAGGGGATATAAAATAGACAA
ATGTGTTCCAGAGCTTTGGAAACATTAGATTGCAAAGCCTGAGTTGATCG
GCTCATCATTATGCCCGCTACACTGATTCTAAGCGGGGCGGAAACAGGCG
GTTGTTCCTTTGTGCAGACAAAAAGAGTACAGCCAGTGCAAGTAGACCGT
GACCCCGAGTTTTTTGTCGAGATGAGAGACGGATGAGAGGGGTAGGCGGG
TGAATCGACCCACCAGGTTCTGAAAAGTTGCAACCTATTATTGGGTTTAT
TCTTTTTTTCTCTTGAACTGGCGATCACAATGAACGTAAGGCGTGTTTTT
TCCCACCTTCTGTGTTGGTCTATTGACCAAGTTGGACCTAGGCCCGAGTT
TGTGTCTGAAAATGTGATAAGTCCGACTACCAAATCCTCGCCGTACCGAA
CTTGACCTCCCCCGGTTTTATTACACGACGTGCGACTGGTAAAATATACG
CACTTGAACGCATATTCCACAGGTGGCCCTTGAGCGCCACTAAGATTTAT
TACGTCATCCGATACATGAAAAGTTTCGTGTGCTGAAACACTTGAAAAAC
TCATGGAAGCCTTGTACTGTAGAAACGGGAAATAAATAAACACGGATCAG
TCATTAGATCATGATAATTGTTCTGTATATTTTCCCTTGTAAGCGTCATC
TCCAAGCCATTCCTCTTCGCCCAGAAATTGTTTGAAATCCCGTCGTCCCT
CAATATCAGTGGAGCTATTGGGTAAAAATTATCGACGTGGCGGAGAAATC
CCGTGAGTACTTATGCAGTCGTAGTACACGTGATCAGACAACTGGACTAT
TTCGTATCATGGAGTTGTAGGTGAGGGATACATACCGCAGCGCGCACAAT
CGGCAGGATCACAGAAGTTGTTGATTCGGTTAATAGGAGAGATGTTTACA
TATGTGGAGGAGTGTATGGTGGAAGGAGGAGGGAATTGTCGTGAACTTCG
ACTTTGCAATTACGGCTTCCAGTAGTTGTGATCGAAAGATCGTAATTATA
GAGGTATGGTGTGGGACCTGTGTAACTTGCATGATGTATTCATCCACTTT
CCTCCATCGGGCCAATTCATACAGTTCACTCCGTAGGTGCCAGTAACTTG
GCGTTAATCCTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1663:13072..20233- >mRNA_H-paniculata_contig1663.3749.1 ID=mRNA_H-paniculata_contig1663.3749.1|Name=mRNA_H-paniculata_contig1663.3749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig1663:13072..20233- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCTCGGTTCTCTGCTCTTGCACTGTTGGCCGTGATCTCCTCGGTCAC CGCGTTCGTTCCATCGTTCGCTCCCGCAAACAGTATCACACGCTCAGTAT CGGCACAGCAGCCAGCGACTTGTAAGCCGTCTGTGCGCATGATGGCAGTG GAAGGCGCAATAGCGGCTCCAACGATGGCTCGGTTCTCTGCTCTTGCACT GTTGGCCGTGATCTCCTCGGTCACCGCGTTCGTTCCATCGTTCGCTCCCG CAAACAGTATCACACGCTCAGTATCGGCACAGCAGCCAGCGACTTGTAAG CCGTCTGTGCGCATGATGGCAGTGGAAGGCGCAATAGCGGCTCCAACGGC GGAATCGTTGAAAGCGATGGCTGAAGCTTGCCAAGAGGATGGCTGCTCCG TTGAGGCCGTGAGCCAGCTGCTCGACCAGCTCAAGTCGAAAAAGCAAGAA CTCGAGGCGGAATCGTTGAAAGCGATGGCTGAAGCTTGCCAAGAGGATGG CTGCTCCGTTGAGGCCGTGAGCCAGCTGCTCGACCAGCTCAAGTCGAAAA AGCAAGAACTCGAGATGCAACTTGTGACGGTGGATGACGTGCTCACGATG ATGGGCGACACCAGCTCGTTGAGCGAGAAGGGCGAGTTAGAGAAGCTTGT GATGGCAGTCGGGCGTTTGTTCTCCCCGAACGACGACGACTACCCATACC TTGACTACCCCACTGGTTGGTCTGGGGACATCAGCCAGATGCAACTTGTG ACGGTGGATGACGTGCTCACGATGATGGGCGACACCAGCTCGTTGAGCGA GAAGGGCGAGTTAGAGAAGCTTGTGATGGCAGTCGGGCGTTTGTTCTCCC CGAACGACGACGACTACCCATACCTTGACTACCCCACTGGTTGGTCTGGG GACATCAGCCAGGATAAGAAGGATGCTTGGGACTACAACATGAACACTCC ATTGAAGCCCGTCAAGCCGGTTTACAACAAGTAGGATAAGAAGGATGCTT GGGACTACAACATGAACACTCCATTGAAGCCCGTCAAGCCGGTTTACAAC AAGTAG back to top
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