mRNA_H-paniculata_contig1660.3741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1660.3741.1
Unique NamemRNA_H-paniculata_contig1660.3741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1660.3741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1660contigH-paniculata_contig1660:1759..2550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1660.3741.1prot_H-paniculata_contig1660.3741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1660 2034..2537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.5057943-UTR-H-paniculata_contig1660:1758..20331622929318.5057943-UTR-H-paniculata_contig1660:1758..2033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1660 1759..2033 +
1691480813.6718373-UTR-H-paniculata_contig1660:1758..20331691480813.6718373-UTR-H-paniculata_contig1660:1758..2033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1660 1759..2033 +
1622929318.5357313-UTR-H-paniculata_contig1660:2537..25501622929318.5357313-UTR-H-paniculata_contig1660:2537..2550Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1660 2538..2550 +
1691480813.687585-UTR-H-paniculata_contig1660:2537..25501691480813.687585-UTR-H-paniculata_contig1660:2537..2550Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1660 2538..2550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.5246427-CDS-H-paniculata_contig1660:2033..25371622929318.5246427-CDS-H-paniculata_contig1660:2033..2537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1660 2034..2537 +
1691480813.680167-CDS-H-paniculata_contig1660:2033..25371691480813.680167-CDS-H-paniculata_contig1660:2033..2537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1660 2034..2537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1660.3741.1

>prot_H-paniculata_contig1660.3741.1 ID=prot_H-paniculata_contig1660.3741.1|Name=mRNA_H-paniculata_contig1660.3741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MRVSVKFSQVSQLPIKCKMYNTYICSFEEKDNGSKINRERALQSEPLMMA
RREKQQHKAEETFLRRGSRGRGGVTCQLYPFAQPKGPRAPHPCASRRRQI
ATECCVRGAKILSWGAITRHIYMNLSCPCCCHHARPSLRYEKESKENRNK
ILHSRRHPNTQQIIAPP*
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mRNA from alignment at H-paniculata_contig1660:1759..2550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1660.3741.1 ID=mRNA_H-paniculata_contig1660.3741.1|Name=mRNA_H-paniculata_contig1660.3741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=792bp|location=Sequence derived from alignment at H-paniculata_contig1660:1759..2550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCATCACGGAGGGTATGCCATCTTGTGTAAACCTATGGTACTTCTGCT
GCAAAAGCGAGTGCGATAATTGCCCATGAATTTGGCGCCAATCTCACAGC
TACTCATGAGCAACCTTCAAATAACGTAAGGGGAGCAGGTATAGGCTTCG
GTAAGGGTTAGGTATCAACAGGTGCGCATTCATTTTTTAAATAAACGAGC
CTGCATGCACAACCCAGACCAATCAAGAAATTGAGAACTCTACCATAGGG
GGGGGAGGGGGGGGGCGAGGAGGAGATGCGAGTCTCAGTGAAATTCAGCC
AAGTGTCTCAGCTGCCGATCAAATGTAAAATGTACAATACATATATTTGT
TCGTTTGAAGAAAAGGACAACGGGAGCAAGATAAATAGAGAGAGAGCCCT
TCAGAGCGAGCCTCTCATGATGGCGAGGCGTGAAAAACAACAACACAAAG
CGGAAGAGACATTTCTCCGGAGAGGGTCTCGGGGACGGGGCGGTGTCACC
TGTCAACTGTATCCATTTGCCCAACCGAAAGGGCCGCGTGCACCCCACCC
GTGCGCCTCTCGCCGCAGACAGATAGCAACAGAATGTTGCGTACGTGGAG
CAAAAATACTGTCCTGGGGCGCCATCACGAGGCATATATATATGAATCTC
TCATGCCCCTGTTGTTGTCATCACGCGCGACCGTCTCTACGGTATGAAAA
GGAGAGCAAAGAAAATAGAAATAAAATTCTACATTCCCGAAGACATCCAA
ACACACAACAGATCATCGCTCCACCGTAACACAACCTCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1660:1759..2550+

>mRNA_H-paniculata_contig1660.3741.1 ID=mRNA_H-paniculata_contig1660.3741.1|Name=mRNA_H-paniculata_contig1660.3741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig1660:1759..2550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTCTCAGTGAAATTCAGCCAAGTGTCTCAGCTGCCGATCAAATG
TAAAATGTACAATACATATATTTGTTCGTTTGAAGAAAAGGACAACGGGA
GCAAGATAAATAGAGAGAGAGCCCTTCAGAGCGAGCCTCTCATGATGGCG
AGGCGTGAAAAACAACAACACAAAGCGGAAGAGACATTTCTCCGGAGAGG
GTCTCGGGGACGGGGCGGTGTCACCTGTCAACTGTATCCATTTGCCCAAC
CGAAAGGGCCGCGTGCACCCCACCCGTGCGCCTCTCGCCGCAGACAGATA
GCAACAGAATGTTGCGTACGTGGAGCAAAAATACTGTCCTGGGGCGCCAT
CACGAGGCATATATATATGAATCTCTCATGCCCCTGTTGTTGTCATCACG
CGCGACCGTCTCTACGGTATGAAAAGGAGAGCAAAGAAAATAGAAATAAA
ATTCTACATTCCCGAAGACATCCAAACACACAACAGATCATCGCTCCACC
GTAAATGCGAGTCTCAGTGAAATTCAGCCAAGTGTCTCAGCTGCCGATCA
AATGTAAAATGTACAATACATATATTTGTTCGTTTGAAGAAAAGGACAAC
GGGAGCAAGATAAATAGAGAGAGAGCCCTTCAGAGCGAGCCTCTCATGAT
GGCGAGGCGTGAAAAACAACAACACAAAGCGGAAGAGACATTTCTCCGGA
GAGGGTCTCGGGGACGGGGCGGTGTCACCTGTCAACTGTATCCATTTGCC
CAACCGAAAGGGCCGCGTGCACCCCACCCGTGCGCCTCTCGCCGCAGACA
GATAGCAACAGAATGTTGCGTACGTGGAGCAAAAATACTGTCCTGGGGCG
CCATCACGAGGCATATATATATGAATCTCTCATGCCCCTGTTGTTGTCAT
CACGCGCGACCGTCTCTACGGTATGAAAAGGAGAGCAAAGAAAATAGAAA
TAAAATTCTACATTCCCGAAGACATCCAAACACACAACAGATCATCGCTC
CACCGTAA
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