mRNA_H-paniculata_contig16583.3733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16583.3733.1
Unique NamemRNA_H-paniculata_contig16583.3733.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.890e-16
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L K  +NGV   E + DC  CA+GKS Q  HPK   + V  PFQLVF D +
Sbjct:  529 WHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTL 594
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BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.430e-15
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHR L HLN +S+ LL K+  NGV F +++  CD+CA+ KS QLAHP+ T+ +   P QLV+ D M
Sbjct:  311 WHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNM 376
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BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.190e-14
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 HRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            HRRLGHLN +S+ LL K+  N V F +++  CD+CA+ KS QLAHPK T  +   P  LV+ D+M
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIM 174
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BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L ++  +G+ +   + DC  C +GKS Q  HPK   + V+ PFQLVF D +
Sbjct:   47 WHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTL 112
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BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L ++  +G+ +   + DC  C +GKS Q  HPK   + V+ PFQLVF D +
Sbjct:  576 WHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTL 641
[Close]
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L ++  +G+ +   + DC  C +GKS Q  HPK   + V+ PFQLVF D +
Sbjct:  698 WHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTL 763
[Close]
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L ++  +G+ +   + DC  C +GKS Q  HPK   + V+ PFQLVF D +
Sbjct:  576 WHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTL 641
[Close]
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.990e-13
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFAD 192
            WHRR+GH+N KSL +L ++  +G+ +   + DC  C +GKS Q  HPK   + V+ PFQLVF D
Sbjct:  481 WHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVD 544
[Close]
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.480e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L K   NGV +   + DC VC +GKS Q  HPK   + V  PFQ V  D +
Sbjct:  644 WHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTL 709
[Close]
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTTDHKVNHPFQLVFADLM 198
            WHRR+GH+N KSL +L K   NGV +   + DC VC +GKS Q  HPK   + V  PFQ V  D +
Sbjct:  289 WHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTL 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16583.3733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBV6_9PHAE3.890e-1653.03Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYD3_9PHAE3.430e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.190e-1450.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE1.460e-1345.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE1.460e-1345.45Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.460e-1345.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.470e-1345.45Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.990e-1346.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW9_9PHAE9.480e-1348.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE2.410e-1248.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16583contigH-paniculata_contig16583:5616..5813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.960709-CDS-H-paniculata_contig16583:5615..58131622929316.960709-CDS-H-paniculata_contig16583:5615..5813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16583 5616..5813 -
1691480812.9417381-CDS-H-paniculata_contig16583:5615..58131691480812.9417381-CDS-H-paniculata_contig16583:5615..5813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16583 5616..5813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16583.3733.1prot_H-paniculata_contig16583.3733.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16583 5616..5813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16583.3733.1

>prot_H-paniculata_contig16583.3733.1 ID=prot_H-paniculata_contig16583.3733.1|Name=mRNA_H-paniculata_contig16583.3733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
WHRRLGHLNRKSLHLLNKRGHNGVSFDETIPDCDVCAVGKSHQLAHPKTT
DHKVNHPFQLVFADLM
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mRNA from alignment at H-paniculata_contig16583:5616..5813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16583.3733.1 ID=mRNA_H-paniculata_contig16583.3733.1|Name=mRNA_H-paniculata_contig16583.3733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig16583:5616..5813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATCGGCGGCTTGGACACCTCAACCGCAAGAGCCTGCACCTTCTGAA
TAAGAGGGGCCACAATGGGGTGAGCTTCGATGAGACCATTCCAGATTGCG
ACGTCTGCGCCGTGGGGAAGAGCCACCAGCTGGCCCACCCCAAGACGACC
GATCACAAGGTCAACCACCCCTTCCAGCTGGTCTTCGCAGACCTGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig16583:5616..5813-

>mRNA_H-paniculata_contig16583.3733.1 ID=mRNA_H-paniculata_contig16583.3733.1|Name=mRNA_H-paniculata_contig16583.3733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig16583:5616..5813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATCGGCGGCTTGGACACCTCAACCGCAAGAGCCTGCACCTTCTGAA
TAAGAGGGGCCACAATGGGGTGAGCTTCGATGAGACCATTCCAGATTGCG
ACGTCTGCGCCGTGGGGAAGAGCCACCAGCTGGCCCACCCCAAGACGACC
GATCACAAGGTCAACCACCCCTTCCAGCTGGTCTTCGCAGACCTGATGTG
GCATCGGCGGCTTGGACACCTCAACCGCAAGAGCCTGCACCTTCTGAATA
AGAGGGGCCACAATGGGGTGAGCTTCGATGAGACCATTCCAGATTGCGAC
GTCTGCGCCGTGGGGAAGAGCCACCAGCTGGCCCACCCCAAGACGACCGA
TCACAAGGTCAACCACCCCTTCCAGCTGGTCTTCGCAGACCTGATG
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