mRNA_H-paniculata_contig16581.3732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16581.3732.1
Unique NamemRNA_H-paniculata_contig16581.3732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16581.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16581contigH-paniculata_contig16581:3849..4618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.8966677-CDS-H-paniculata_contig16581:3848..39771622929316.8966677-CDS-H-paniculata_contig16581:3848..3977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16581 3849..3977 +
1691480812.9244561-CDS-H-paniculata_contig16581:3848..39771691480812.9244561-CDS-H-paniculata_contig16581:3848..3977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16581 3849..3977 +
1622929316.9078188-CDS-H-paniculata_contig16581:4544..46161622929316.9078188-CDS-H-paniculata_contig16581:4544..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16581 4545..4616 +
1691480812.9333215-CDS-H-paniculata_contig16581:4544..46161691480812.9333215-CDS-H-paniculata_contig16581:4544..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16581 4545..4616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16581.3732.1prot_H-paniculata_contig16581.3732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16581 3849..4616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16581.3732.1

>prot_H-paniculata_contig16581.3732.1 ID=prot_H-paniculata_contig16581.3732.1|Name=mRNA_H-paniculata_contig16581.3732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
RKPRGSTSPRHCAIVSFMRNWVKVYGESMPNRNVTRLYLSSKKELYERLK
KSRAASIVLLLRIVWPL
back to top

mRNA from alignment at H-paniculata_contig16581:3849..4618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16581.3732.1 ID=mRNA_H-paniculata_contig16581.3732.1|Name=mRNA_H-paniculata_contig16581.3732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=770bp|location=Sequence derived from alignment at H-paniculata_contig16581:3849..4618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCCCCGCGGGTCCACGTCCCCACGACACTGTGCGATTGTATCGTT
CATGCGCAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAACG
TAACAAGGCTCTACTTGTCCAGCAAGAAGGTAAGAAACGGCAAACGAGCA
TGGGAATCATGTGTTAGTGAGCAGAGAAGTAAACAGAGATATTCTGAATA
TTTTTCAAGCTTTTTTTATTGGTTGCGATGACGCTGCCATTGTCATGGTT
ACTTCGTTAGTTGGTAGTTGTGTTGTGCTTGATATGTGTAACCGTGATTG
ACGGCAATATGTTTGTGGTGTTGGTTGTGGCGGTTGTGATGTTGTTTCCC
TCTTGTTGCACACAGGAATCATAGGTAGGTAGCAGTGTTGGTAGCCGTTT
TTATAGTAGTATCGGCAACAGTAGTAGTTGTTATAGTAGTCACGTGTTGT
GGTAGCATTGGCTTTTTTAGTGCACAACAGTTGTAACAGTAAGGTTTTTA
CCTCAGCCTTCCGGGGGTTAAACCTCCCCCCAAAAAAACAGTAGTACAAC
AAGATGAAATGCAGCCGGCCAAAAAATAGATCACTCTACAGTATGTCGTT
GTTTTCATCATGCTTCACTTCTTTGGTGTGCCCGACACGGCCCTCCTTCT
CCCTCTACGCTCCGTCTTCCCCTCATCTGGCATTGATATTTGGCAGGAAC
TATACGAGCGTTTAAAGAAGAGCAGAGCCGCGTCTATCGTACTGCTGCTG
CGGATTGTCTGGCCTCTCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16581:3849..4618+

>mRNA_H-paniculata_contig16581.3732.1 ID=mRNA_H-paniculata_contig16581.3732.1|Name=mRNA_H-paniculata_contig16581.3732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig16581:3849..4618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCCCCGCGGGTCCACGTCCCCACGACACTGTGCGATTGTATCGTT
CATGCGCAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAACG
TAACAAGGCTCTACTTGTCCAGCAAGAAGAGGAAGCCCCGCGGGTCCACG
TCCCCACGACACTGTGCGATTGTATCGTTCATGCGCAATTGGGTCAAGGT
CTACGGAGAGAGTATGCCAAATCGCAACGTAACAAGGCTCTACTTGTCCA
GCAAGAAGGAACTATACGAGCGTTTAAAGAAGAGCAGAGCCGCGTCTATC
GTACTGCTGCTGCGGATTGTCTGGCCTCTCGAACTATACGAGCGTTTAAA
GAAGAGCAGAGCCGCGTCTATCGTACTGCTGCTGCGGATTGTCTGGCCTC
TC
back to top