mRNA_H-paniculata_contig1655.3725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1655.3725.1
Unique NamemRNA_H-paniculata_contig1655.3725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.610e-65
Identity = 147/422 (34.83%), Postives = 202/422 (47.87%), Query Frame = 1
Query:    1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEVTAFVTDEL-------------------------------------------------------------------------------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
            A +KE+ SL+  +VY+LVP T +P     IGS+ VFKVK +N++KAR+V +GW Q  G DCG   + VC +QS+R+  A+AAE DLDV+QLD++TA L A ++E V++ + PG+E ++ +  +  VMKL +SL GL QSP +W  T D  L EIGF  LKS  CVY Y   +   V     D+L                                                                                                                               N G+N DN KSMSSYI M++ AP S K GLQ LTA  T+EAELVA  + MKE ++C NMM E+G+G   ++ PL +D+   L+VI N+TFSG  KH+ALRFF++R++V+ G
Sbjct:  320 ATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKN-MEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEG 740          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.600e-50
Identity = 117/331 (35.35%), Postives = 168/331 (50.76%), Query Frame = 1
Query:   13 EMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYA-----------------YVAKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQL-----------------------TMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
            E+ SLK  +VY+LVP T  P   K I S+ VFK K+  S+K R+V QGW Q  G D G   + VC +Q +R+   +A + +L + Q+D+ TA   A + E V++  PPGFE +D   G   VM+L +SLY L ++P NW+ T D  L EIGFV LKS     +                 +   D  EV   +  E+ +    D ++   +         +  ++G+ G    +                       TMEAEL+A  + MKEAV+C NM+ E+G+G     VPL  DN   LH + NR+FS + KH+ALRF ++RELV  G
Sbjct:  747 EIASLKERQVYKLVPRTAFPPGRKRIKSKWVFKRKTGGSFKGRLVAQGWNQVPGLDGGSTYAPVCRLQRIRMLACIAEQFNLQLDQMDVSTAFPYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYRLAKNPSNWFHTVDPSLVEIGFVPLKSDTASTSGNNSNAISMIKKKLRQRFKMTDMAEVKLVLGMEIKR----DRIQGTLTIAQEAYSKSVYLREGIMGCLMYIAQVLRYDIMHATGPPNGETQQGSTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALENRSFSSRTKHIALRFLYIRELVSEG 1072          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.950e-50
Identity = 121/319 (37.93%), Postives = 160/319 (50.16%), Query Frame = 1
Query:  103 VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEV-TAFVTDEL---------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
            ++K  ++   K+    +GW Q  G DC    + V  +QSVR+ +A+AAEMD +V QLD++T+ L A L+E+V++++ PGFE R++  G   VMKL  SLYGL QSP NWW T D  L E+GF  LKS  CVY Y   +   + T +V D L                                                         N GNNPDN KS SSY+ +++KAP SFK GLQ L A  TM AELVA  + MKE V C NMM E+G G     VP                   + KH+A+RFF++RELV+ G
Sbjct:  315 LWKQATEREIKSLQELKGWNQVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNA-NGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDDRLVIGGKHRTTSQLARAMSKPAKVHMGAAKHRLGYLAGTPYFCITYKRGGFKLTTFSDANWGNNPDNAKSTSSYMIVMSKAPESFKTGLQSLRAVSTMMAELVAAALTMKEVVVCSNMMTEIGSGQQFGQVPFS-----------------RTKHIAIRFFYLRELVKEG 615          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.850e-45
Identity = 97/200 (48.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:    4 MNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSS 594
            + +EM SL   +VY+LVP + +P   K I S+ VFK K+D ++K RVV QGW Q  G DCG   + VC IQSVR+   +  E +L   Q+D+ TA L A ++EEV++  PPGFE +D   G   VMKL +SLYGL QSP NW+ T D  L EIGFV LKS PCVY Y    AK Y  +T +V D L  GN+ D +K + S
Sbjct:  149 LKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAIKHLLS 345          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.710e-44
Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMG 744
            A  +EM SL   +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q  G DCG   + VC IQSVR+   +  E +L   Q+D+ TA L A ++EEV++  PPGFE +D   G   VMKL +SLYGL QSP NW+ T D  L EIGFV LKS PCVY Y    AK Y  +T +V D L  GN+ D +  +   +    K       G   L   + +  +  A  + + +  YC +++   G
Sbjct: 1169 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL---GEASLVLGMEIRRDREANTLTISQEAYCKSILERFG 1413          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.750e-44
Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMG 744
            A  +EM SL   +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q  G DCG   + VC IQSVR+   +  E +L   Q+D+ TA L A ++EEV++  PPGFE +D   G   VMKL +SLYGL QSP NW+ T D  L EIGFV LKS PCVY Y    AK Y  +T +V D L  GN+ D +  +   +    K       G   L   + +  +  A  + + +  YC +++   G
Sbjct: 1334 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL---GEASLVLGMEIRRDREANTLTISQEAYCKSILERFG 1578          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.180e-43
Identity = 96/194 (49.48%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPD 573
            A  +EM SL   +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q  G DCG   + VC IQSVR+   +  E +L   Q+D+ TA L   + EEV++  PPGFE +D   G   VMKL RSLYGL QSP NW+ T D  L EIGFV LKS PCVY Y    AK Y  +T +V D L  GN+ D
Sbjct:  950 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDK-DGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSD 1140          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.020e-43
Identity = 125/399 (31.33%), Postives = 157/399 (39.35%), Query Frame = 1
Query:  196 SSVCCI---QSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAY----------------------------------------------------VAKDYDEVTAFVTDEL------------------------------------------------------------------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
            S VC I    S+R+  A   E +L   Q+D+ TA L A ++EEV++  PPGFE +D   G   VMKL +SLYGL QSP NW+ T D  + EIGFV LKS PCVY Y                                                    + +D +  T  ++ E                                                                                                                   N  NNPDN KS SSY+TMLA AP+SF+ GLQGLTA  TMEAELVA  + MKEAV+C NMM E+G+G     +P+  DN   LH + NR+FS + KH+ALRFFF+RELV  G
Sbjct:    2 SLVCVIFRFYSLRVG-APTVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEG 399          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.830e-43
Identity = 93/209 (44.50%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEV----TAFVTDELNKGNNPDNLKSMSSYITMLAK 615
            A  +E+ SLK  +VY+LVP T +P   K I S+ VFK K+  S+K R+V QGW Q  G DCG   + VC  QS+R+   +A + +L++ Q+D+ TA L A + E V++  PPGFE +D   G   VM+L +SLYGL QSP NW+ T D +L EIGFV LKS  CVY Y   D+D+V    T +V D L  GNN   +  +   +T   K
Sbjct:  477 AAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY---DHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFK 681          
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 8.210e-42
Identity = 108/271 (39.85%), Postives = 152/271 (56.09%), Query Frame = 1
Query:  157 WGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEE-------------VYMRLPPGFEKRDSVTGV-PFVMKLLRSLYGLRQSP*NWWVTTDKYLGEI----GFVTLKSYPCVYAYVAKDYD----------EVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
            W Q  G D G   + VC +QS+R+ +A+AAE DLDV+QLD++TA L A ++E+             +  R   G  K  S  G  P +  ++ S+  L Q      +     L         + + +   +  Y++   D          ++TA    + N GNNPDN KSMSSYI M++KAP+SFK GLQ LTA  T+EAELVA  + MKE ++C NMM E+G+G    + PL + N   LHVI N+TFSG+ KHVALRFF++RE+V+ G
Sbjct:  385 WNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTAL--SDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEG 652          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.610e-6534.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KB94_9PHAE4.600e-5035.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KUT9_9PHAE8.950e-5037.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.850e-4548.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE3.710e-4441.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE3.750e-4441.04Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.180e-4349.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE3.020e-4331.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE9.830e-4344.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE8.210e-4239.85CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1655contigH-paniculata_contig1655:6374..7781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue2e-07
Seed eggNOG ortholog981085.XP_010101443.1
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Abnormal spindle-like microcephaly-associated protein homolog
EggNOG OGs37R7M@33090,3GGW1@35493,4JJ08@91835,COG2801@1,KOG0017@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size885
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1655.3725.1prot_H-paniculata_contig1655.3725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1655 7359..7550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.4311724-UTR-H-paniculata_contig1655:6373..67001622929316.4311724-UTR-H-paniculata_contig1655:6373..6700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 6374..6700 -
1691480812.679327-UTR-H-paniculata_contig1655:6373..67001691480812.679327-UTR-H-paniculata_contig1655:6373..6700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 6374..6700 -
1622929316.4437697-UTR-H-paniculata_contig1655:7223..73581622929316.4437697-UTR-H-paniculata_contig1655:7223..7358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 7224..7358 -
1691480812.6891522-UTR-H-paniculata_contig1655:7223..73581691480812.6891522-UTR-H-paniculata_contig1655:7223..7358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 7224..7358 -
1622929316.4640284-UTR-H-paniculata_contig1655:7550..77811622929316.4640284-UTR-H-paniculata_contig1655:7550..7781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 7551..7781 -
1691480812.7106545-UTR-H-paniculata_contig1655:7550..77811691480812.7106545-UTR-H-paniculata_contig1655:7550..7781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1655 7551..7781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.4542928-CDS-H-paniculata_contig1655:7358..75501622929316.4542928-CDS-H-paniculata_contig1655:7358..7550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1655 7359..7550 -
1691480812.6981936-CDS-H-paniculata_contig1655:7358..75501691480812.6981936-CDS-H-paniculata_contig1655:7358..7550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1655 7359..7550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1655.3725.1

>prot_H-paniculata_contig1655.3725.1 ID=prot_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVM
KLLRSLYGLRQSP*
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mRNA from alignment at H-paniculata_contig1655:6374..7781-

Legend: UTRpolypeptideCDS
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>mRNA_H-paniculata_contig1655.3725.1 ID=mRNA_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1408bp|location=Sequence derived from alignment at H-paniculata_contig1655:6374..7781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATGAATAAAGAGATGGACAGCTTGAAAACCAACCGCGTCTACCAACT AGTGCCTCACACCAAAATACCAGCAGACCTAAAGAGCATCGGGTCGCGTT GAGTATTCAAAGTAAAATCCGACAACTCATACAAAGCTCGGGTTGTGGGC CAGGGCTGGGGGCAGGAGGCTGGATGAGACTGCGGGAAAATAGATTCATC AGTATGCTGCATCCAAAGTGTCCGCATTACCATGGCCGTGGCTGCCGAAA TGGATCTGGACGTCATGCAACTTGATATCCAAACCGCTTCCCTAAATGCA CCACTGAAGGAGGAAGTATACATGCGTCTACCGCCCGGTTTCGAGAAAAG GGACAGCGTGACAGGTGTGCCATTCGTGATGAAACTTCTTCGATCGCTCT ATGGCCTCCGACAGTCTCCATAGAACTGGTGGGTTACGACGGATAAATAT CTTGGAGAGATTGGATTTGTGACTCTCAAGTCTTATCCGTGCGTGTATGC CTATGTCGCAAAGGATTATGACGAGGTGACGGCTTTTGTTACGGATGAAC TCAACAAGGTCGCTGCCATTCTTACGCTCTATGTGGACCATTTACTCATG GCTGGCAAGGATAAGGCAATCCTGGCCATGCTCAAGAAGAAGCTGATAGA GAGGTTCACTAAGACCGATCTGGGCGACGTTTATAATGTCTTAGGAATGA AAATTACCCAGGATAGAAAGACTGGTACACTGAGCATCGACCAATCGGCA TGGACAAGTGCAATCCAGCAACAACACCCGGAAATGGGCCAGACATCTCT GGTAAGAAACCGGTGGAGGAACTGCTCAACGCAGACGACACGCAACATTA CCAAGCCGTCGTTGGTTCAGTCATGTACTTGGTGCAAGTCATGTACTTGG CGCAAGTCACGCGCTATGACACCCAGCTGTAAATCAATTGACGCGGGCAA CGGCAACACCCGCAAACCCCTAGATGGCTGGGGGGAAACATCTTCATCGT GATCTAGCAGGAAGAATCGACCACCAGATCTGCTACAAACAAGGCGGATT CAGACTGACAGCATTTTCGGATGCTAACTAGGGAAACAACCCAGACAACT TGAAATCGATGTCTTCATACATCACCATGCTGGCTAAAGCACCAATCAGC TTCAAGGATGGACTGCAGGGACTAACTGCACAGTTGACCATGGAGGCTGA ACTTGTGGCCAGAGTAATTGTGATGAAGGAAGCGGTGTACTGCTGCAACA TGATGATCGAGATGGGGTACGGATTAACATTGAACACCGTGCCACTTGAT CTCGACAACAGGGTGGCTCTTCACGTTATTGCCAACCGCACGTTCAGCGG CAAGAAGAAACACGTAGCACTACGCTTCTTCTTCGTGAGGGAACTAGTGG AAATGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1655:6374..7781-

>mRNA_H-paniculata_contig1655.3725.1 ID=mRNA_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig1655:6374..7781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGTGGCTGCCGAAATGGATCTGGACGTCATGCAACTTGATATCCA
AACCGCTTCCCTAAATGCACCACTGAAGGAGGAAGTATACATGCGTCTAC
CGCCCGGTTTCGAGAAAAGGGACAGCGTGACAGGTGTGCCATTCGTGATG
AAACTTCTTCGATCGCTCTATGGCCTCCGACAGTCTCCATAGATGGCCGT
GGCTGCCGAAATGGATCTGGACGTCATGCAACTTGATATCCAAACCGCTT
CCCTAAATGCACCACTGAAGGAGGAAGTATACATGCGTCTACCGCCCGGT
TTCGAGAAAAGGGACAGCGTGACAGGTGTGCCATTCGTGATGAAACTTCT
TCGATCGCTCTATGGCCTCCGACAGTCTCCATAG
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