mRNA_H-paniculata_contig1655.3725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 228 bits (581), Expect = 1.610e-65 Identity = 147/422 (34.83%), Postives = 202/422 (47.87%), Query Frame = 1
Query: 1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEVTAFVTDEL-------------------------------------------------------------------------------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
A +KE+ SL+ +VY+LVP T +P IGS+ VFKVK +N++KAR+V +GW Q G DCG + VC +QS+R+ A+AAE DLDV+QLD++TA L A ++E V++ + PG+E ++ + + VMKL +SL GL QSP +W T D L EIGF LKS CVY Y + V D+L N G+N DN KSMSSYI M++ AP S K GLQ LTA T+EAELVA + MKE ++C NMM E+G+G ++ PL +D+ L+VI N+TFSG KH+ALRFF++R++V+ G
Sbjct: 320 ATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKN-MEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEG 740
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE) HSP 1 Score: 187 bits (476), Expect = 4.600e-50 Identity = 117/331 (35.35%), Postives = 168/331 (50.76%), Query Frame = 1
Query: 13 EMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYA-----------------YVAKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQL-----------------------TMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
E+ SLK +VY+LVP T P K I S+ VFK K+ S+K R+V QGW Q G D G + VC +Q +R+ +A + +L + Q+D+ TA A + E V++ PPGFE +D G VM+L +SLY L ++P NW+ T D L EIGFV LKS + + D EV + E+ + D ++ + + ++G+ G + TMEAEL+A + MKEAV+C NM+ E+G+G VPL DN LH + NR+FS + KH+ALRF ++RELV G
Sbjct: 747 EIASLKERQVYKLVPRTAFPPGRKRIKSKWVFKRKTGGSFKGRLVAQGWNQVPGLDGGSTYAPVCRLQRIRMLACIAEQFNLQLDQMDVSTAFPYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYRLAKNPSNWFHTVDPSLVEIGFVPLKSDTASTSGNNSNAISMIKKKLRQRFKMTDMAEVKLVLGMEIKR----DRIQGTLTIAQEAYSKSVYLREGIMGCLMYIAQVLRYDIMHATGPPNGETQQGSTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALENRSFSSRTKHIALRFLYIRELVSEG 1072
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 184 bits (466), Expect = 8.950e-50 Identity = 121/319 (37.93%), Postives = 160/319 (50.16%), Query Frame = 1
Query: 103 VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEV-TAFVTDEL---------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
++K ++ K+ +GW Q G DC + V +QSVR+ +A+AAEMD +V QLD++T+ L A L+E+V++++ PGFE R++ G VMKL SLYGL QSP NWW T D L E+GF LKS CVY Y + + T +V D L N GNNPDN KS SSY+ +++KAP SFK GLQ L A TM AELVA + MKE V C NMM E+G G VP + KH+A+RFF++RELV+ G
Sbjct: 315 LWKQATEREIKSLQELKGWNQVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNA-NGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDDRLVIGGKHRTTSQLARAMSKPAKVHMGAAKHRLGYLAGTPYFCITYKRGGFKLTTFSDANWGNNPDNAKSTSSYMIVMSKAPESFKTGLQSLRAVSTMMAELVAAALTMKEVVVCSNMMTEIGSGQQFGQVPFS-----------------RTKHIAIRFFYLRELVKEG 615
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.850e-45 Identity = 97/200 (48.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query: 4 MNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSS 594
+ +EM SL +VY+LVP + +P K I S+ VFK K+D ++K RVV QGW Q G DCG + VC IQSVR+ + E +L Q+D+ TA L A ++EEV++ PPGFE +D G VMKL +SLYGL QSP NW+ T D L EIGFV LKS PCVY Y AK Y +T +V D L GN+ D +K + S
Sbjct: 149 LKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAIKHLLS 345
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.710e-44 Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 1
Query: 1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMG 744
A +EM SL +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q G DCG + VC IQSVR+ + E +L Q+D+ TA L A ++EEV++ PPGFE +D G VMKL +SLYGL QSP NW+ T D L EIGFV LKS PCVY Y AK Y +T +V D L GN+ D + + + K G L + + + A + + + YC +++ G
Sbjct: 1169 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL---GEASLVLGMEIRRDREANTLTISQEAYCKSILERFG 1413
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.750e-44 Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 1
Query: 1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMG 744
A +EM SL +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q G DCG + VC IQSVR+ + E +L Q+D+ TA L A ++EEV++ PPGFE +D G VMKL +SLYGL QSP NW+ T D L EIGFV LKS PCVY Y AK Y +T +V D L GN+ D + + + K G L + + + A + + + YC +++ G
Sbjct: 1334 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL---GEASLVLGMEIRRDREANTLTISQEAYCKSILERFG 1578
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.180e-43 Identity = 96/194 (49.48%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYV---AKDYDEVTAFVTDELNKGNNPD 573
A +EM SL +VY+LVP + +P + K I S+ VFK K+D ++K RVV QGW Q G DCG + VC IQSVR+ + E +L Q+D+ TA L + EEV++ PPGFE +D G VMKL RSLYGL QSP NW+ T D L EIGFV LKS PCVY Y AK Y +T +V D L GN+ D
Sbjct: 950 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDK-DGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIY--LTLYVDDLLLAGNDSD 1140
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.020e-43 Identity = 125/399 (31.33%), Postives = 157/399 (39.35%), Query Frame = 1
Query: 196 SSVCCI---QSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAY----------------------------------------------------VAKDYDEVTAFVTDEL------------------------------------------------------------------------------------------------------------------NKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
S VC I S+R+ A E +L Q+D+ TA L A ++EEV++ PPGFE +D G VMKL +SLYGL QSP NW+ T D + EIGFV LKS PCVY Y + +D + T ++ E N NNPDN KS SSY+TMLA AP+SF+ GLQGLTA TMEAELVA + MKEAV+C NMM E+G+G +P+ DN LH + NR+FS + KH+ALRFFF+RELV G
Sbjct: 2 SLVCVIFRFYSLRVG-APTVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEG 399
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 166 bits (420), Expect = 9.830e-43 Identity = 93/209 (44.50%), Postives = 126/209 (60.29%), Query Frame = 1
Query: 1 AMNKEMDSLKTNRVYQLVPHTKIPADLKSIGSR*VFKVKSDNSYKARVVGQGWGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMKLLRSLYGLRQSP*NWWVTTDKYLGEIGFVTLKSYPCVYAYVAKDYDEV----TAFVTDELNKGNNPDNLKSMSSYITMLAK 615
A +E+ SLK +VY+LVP T +P K I S+ VFK K+ S+K R+V QGW Q G DCG + VC QS+R+ +A + +L++ Q+D+ TA L A + E V++ PPGFE +D G VM+L +SLYGL QSP NW+ T D +L EIGFV LKS CVY Y D+D+V T +V D L GNN + + +T K
Sbjct: 477 AAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY---DHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFK 681
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 164 bits (414), Expect = 8.210e-42 Identity = 108/271 (39.85%), Postives = 152/271 (56.09%), Query Frame = 1
Query: 157 WGQEAG*DCGKIDSSVCCIQSVRITMAVAAEMDLDVMQLDIQTASLNAPLKEE-------------VYMRLPPGFEKRDSVTGV-PFVMKLLRSLYGLRQSP*NWWVTTDKYLGEI----GFVTLKSYPCVYAYVAKDYD----------EVTAFVTDELNKGNNPDNLKSMSSYITMLAKAPISFKDGLQGLTAQLTMEAELVARVIVMKEAVYCCNMMIEMGYGLTLNTVPLDLDNRVALHVIANRTFSGKKKHVALRFFFVRELVEMG 885
W Q G D G + VC +QS+R+ +A+AAE DLDV+QLD++TA L A ++E+ + R G K S G P + ++ S+ L Q + L + + + + Y++ D ++TA + N GNNPDN KSMSSYI M++KAP+SFK GLQ LTA T+EAELVA + MKE ++C NMM E+G+G + PL + N LHVI N+TFSG+ KHVALRFF++RE+V+ G
Sbjct: 385 WNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTAL--SDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEG 652 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1655.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1655.3725.1 >prot_H-paniculata_contig1655.3725.1 ID=prot_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp MAVAAEMDLDVMQLDIQTASLNAPLKEEVYMRLPPGFEKRDSVTGVPFVMback to top mRNA from alignment at H-paniculata_contig1655:6374..7781- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1655.3725.1 ID=mRNA_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1408bp|location=Sequence derived from alignment at H-paniculata_contig1655:6374..7781- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1655:6374..7781- >mRNA_H-paniculata_contig1655.3725.1 ID=mRNA_H-paniculata_contig1655.3725.1|Name=mRNA_H-paniculata_contig1655.3725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig1655:6374..7781- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |