mRNA_H-paniculata_contig16541.3722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16541.3722.1
Unique NamemRNA_H-paniculata_contig16541.3722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: D7G688_ECTSI (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G688_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.280e-43
Identity = 93/134 (69.40%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEAATSGK--RRRGSSIQSRASST----EEKGLSGQLGSR 384
            +YALFDPTTQMAYIPLDEESK     VKGKAAIDGLGSRLGKSGASF+QQGLVLAFGNIL AAP VAVIFYAALGSWTYGA RLA++F+AKTR+QE     +  R RG     R+SST    ++ G SG+ G++
Sbjct:  406 KYALFDPTTQMAYIPLDEESK-----VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWTYGAVRLADMFEAKTRQQEGDHKPRAIRTRGGGGHDRSSSTGGPVDDDGSSGEEGAK 534
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S2I3P2_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3P2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.750e-30
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQE 288
            +Y LFDPTTQMAYIPLDEESK     VKGKAAID LGSR+GKSGAS +QQGLVL FGNI+ A+P V  IFYA    W   A +L+ L+ AKT+E++
Sbjct:   67 KYGLFDPTTQMAYIPLDEESK-----VKGKAAIDVLGSRVGKSGASLIQQGLVLLFGNIINASPMVMAIFYAVSVGWMMAASKLSVLYLAKTKEEK 157
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S1E6S4_9STRA (ADP,ATP carrier protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6S4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.260e-30
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEA 291
            +YALFDPTTQMAYIPLDEESK     VKGKAAID LGSR+GKSG SF+QQGLV  FG+I+ AAP VAV FY+ L  W  GA +L+ LF A+T   +A
Sbjct:   69 KYALFDPTTQMAYIPLDEESK-----VKGKAAIDVLGSRVGKSGGSFIQQGLVFIFGDIISAAPVVAVNFYSVLFLWFTGANQLSGLFHAQTEMDKA 160
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A1Z5KN04_FISSO (ADP,ATP carrier protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN04_FISSO)

HSP 1 Score: 122 bits (305), Expect = 9.680e-30
Identity = 68/97 (70.10%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEA 291
            +YALFDPTTQMAYIPLD+ESK     VKGKAAID LGSRLGKSG SF+QQGLVL FGNI+ AAP V VIFY  L SW   A RL+ LF A+T  Q+A
Sbjct:  466 KYALFDPTTQMAYIPLDDESK-----VKGKAAIDVLGSRLGKSGGSFIQQGLVLIFGNIINAAPVVGVIFYGVLLSWLSAANRLSGLFLAQTEIQKA 557
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7R9WNG8_9STRA (ADP,ATP carrier protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNG8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.200e-29
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQE 288
            +YALFDPTTQMAYIPLD+ESK      KGKAAID LGSR+GKSG S +QQGLV  FGNI+ AAP VA+IFY+ L  W   A  L+ LF+ K+ E+E
Sbjct:   18 KYALFDPTTQMAYIPLDDESKT-----KGKAAIDVLGSRIGKSGGSLIQQGLVFMFGNIISAAPAVAMIFYSVLFGWLTSANTLSGLFNEKSAEKE 108
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: B8CA79_THAPS (ADP,ATP carrier protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA79_THAPS)

HSP 1 Score: 119 bits (297), Expect = 1.530e-28
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQE 288
            +YALFDPTTQMAYIPLD+ESK     +KGKAAI+ LGSR+GKSG S +QQGLVL FGNI+ AAP + V++Y+ L  W Y A RL  LF AKT  QE
Sbjct:  535 KYALFDPTTQMAYIPLDDESK-----IKGKAAIEVLGSRIGKSGGSLIQQGLVLVFGNIINAAPALVVLYYSVLAWWVYSANRLGSLFLAKTAMQE 625
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S2HZ29_9STRA (ADP,ATP carrier protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZ29_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.100e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKT 276
            +YALFDPTTQMAYIPLDEESK     VKGKAAID LGSR+GKSG S +QQGLV  FG+IL AAP V+++FY  L  W   A +L+ LF A+T
Sbjct:   57 KYALFDPTTQMAYIPLDEESK-----VKGKAAIDVLGSRIGKSGGSLIQQGLVFIFGDILSAAPAVSILFYCILLGWMSSANKLSGLFLART 143
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S2SW40_9STRA (ADP,ATP carrier protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW40_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.920e-28
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    7 ALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQE 288
            ALFDPTTQMAYIPLD ESK     VKGKAAID +GSR GKSG + +QQGLVL FG+I+ AAP VA +F+A + +W Y AF+LAE F+AK + +E
Sbjct:  408 ALFDPTTQMAYIPLDAESK-----VKGKAAIDVMGSRFGKSGGALIQQGLVLVFGSIITAAPAVAALFFAVIAAWVYSAFQLAEQFEAKLKAKE 496
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S4JV62_9STRA (ADP,ATP carrier protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JV62_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.430e-28
Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEA 291
            +YALFDPTTQMAYIPLDEESK     VKGKAAID LGSRLGKSG S LQQ LVLAFG++L AAP VAV+FY  L  W   A RL  LF+A+T   +A
Sbjct:  437 KYALFDPTTQMAYIPLDEESK-----VKGKAAIDVLGSRLGKSGGSLLQQFLVLAFGDMLSAAPAVAVLFYTLLFGWMNSARRLGGLFEARTEMAKA 528
[Close]
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Match: A0A7S2P7Y9_9STRA (ADP,ATP carrier protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7Y9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.590e-27
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 QYALFDPTTQMAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNILRAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEAATSGKR 309
            +Y +FD TTQMAYIPLDEESK     VKGKAAID LGSRLGKSGASF+QQGLVLAFGNI+ AAP + +++Y+   SW    + L  L+++ T +   +T+GK+
Sbjct:  409 KYGMFDATTQMAYIPLDEESK-----VKGKAAIDVLGSRLGKSGASFVQQGLVLAFGNIINAAPVIGILYYSIAASWLSAVYTLGRLYESMT-QSNPSTAGKK 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16541.3722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G688_ECTSI2.280e-4369.40ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2I3P2_9STRA1.750e-3064.58ADP,ATP carrier protein (Fragment) n=1 Tax=Helicot... [more]
A0A7S1E6S4_9STRA4.260e-3065.98ADP,ATP carrier protein (Fragment) n=2 Tax=Thalass... [more]
A0A1Z5KN04_FISSO9.680e-3070.10ADP,ATP carrier protein n=2 Tax=Fistulifera solari... [more]
A0A7R9WNG8_9STRA1.200e-2963.54ADP,ATP carrier protein n=1 Tax=Craspedostauros au... [more]
B8CA79_THAPS1.530e-2864.58ADP,ATP carrier protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2HZ29_9STRA2.100e-2865.22ADP,ATP carrier protein n=1 Tax=Helicotheca tamesi... [more]
A0A7S2SW40_9STRA2.920e-2863.83ADP,ATP carrier protein n=2 Tax=Rhizochromulina ma... [more]
A0A7S4JV62_9STRA7.430e-2868.04ADP,ATP carrier protein n=1 Tax=Odontella aurita T... [more]
A0A7S2P7Y9_9STRA1.590e-2758.25ADP,ATP carrier protein n=1 Tax=Leptocylindrus dan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16541contigH-paniculata_contig16541:1985..5233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7G688
Preferred nameNTT2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2RM9E@2759,COG3202@1
Ec32 ortholog descriptionADP-ATP translocase
Ec32 orthologEc-10_000970.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size405
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16541.3722.1prot_H-paniculata_contig16541.3722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16541 1985..5203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.2397933-CDS-H-paniculata_contig16541:1984..21871622929316.2397933-CDS-H-paniculata_contig16541:1984..2187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 1985..2187 -
1691480812.5920284-CDS-H-paniculata_contig16541:1984..21871691480812.5920284-CDS-H-paniculata_contig16541:1984..2187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 1985..2187 -
1622929316.2530632-CDS-H-paniculata_contig16541:4486..46101622929316.2530632-CDS-H-paniculata_contig16541:4486..4610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 4487..4610 -
1691480812.6052434-CDS-H-paniculata_contig16541:4486..46101691480812.6052434-CDS-H-paniculata_contig16541:4486..4610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 4487..4610 -
1622929316.265579-CDS-H-paniculata_contig16541:5155..52031622929316.265579-CDS-H-paniculata_contig16541:5155..5203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 5156..5203 -
1691480812.6130486-CDS-H-paniculata_contig16541:5155..52031691480812.6130486-CDS-H-paniculata_contig16541:5155..5203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16541 5156..5203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.277315-UTR-H-paniculata_contig16541:5203..52331622929316.277315-UTR-H-paniculata_contig16541:5203..5233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16541 5204..5233 -
1691480812.6206496-UTR-H-paniculata_contig16541:5203..52331691480812.6206496-UTR-H-paniculata_contig16541:5203..5233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16541 5204..5233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16541.3722.1

>prot_H-paniculata_contig16541.3722.1 ID=prot_H-paniculata_contig16541.3722.1|Name=mRNA_H-paniculata_contig16541.3722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MAYIPLDEESKARATHVKGKAAIDGLGSRLGKSGASFLQQGLVLAFGNIL
RAAPFVAVIFYAALGSWTYGAFRLAELFDAKTREQEAATSGKRRRGSSIQ
SRASSTEEKGLSGQLGSRTHEKSS*
back to top

mRNA from alignment at H-paniculata_contig16541:1985..5233-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16541.3722.1 ID=mRNA_H-paniculata_contig16541.3722.1|Name=mRNA_H-paniculata_contig16541.3722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3249bp|location=Sequence derived from alignment at H-paniculata_contig16541:1985..5233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATGCGCTCTTCGACCCTACCACCCAGATGGCCTACATTCCACTTGA
CGAGGAGTCGAAGGCAAGAGCAACACATGTGTAAAATTTGCTGGGCGGTT
GTTCGTGGCGTATTATTGTTGTTATTGTTGTTGTCCGGGAGCTGTTGCGT
GAACCGTAGTCATCAGGCAGAGCTCACTGGAGAGGGAAGCGTAGTTGTTA
TATTTCGTGATGTATCGCTGTTCTTGCGAGTGGTTCAAGCTCATTTGTAT
GATTTAAAACAGCGGTCGTCATTTTGTTAGTTGGTTTTATCGTCCAGTCT
TGGTTTTTCGCGAAAGCCCTGGCCATACTGAGTGGGGCCCTACAGCGAGG
AAAACTGCACGTTGTCGTTATGCGTGTTATCGTTCAAAATCAATTGTGAG
CATATTTCCGGGGTTGGATGTTACACGAAAGGGCTGGTCAAAACAGAGCA
TGTGTGTGAGCGCGTACGCTTGTTCTAGGTAGTATTTTTTTTTTGTTATT
TGCCACTTTTGTTACTGTCATCGTCATCATCTAGAGGGCGTCACGCAACC
TTCACACACACACACACACACACACACACACACACATTGTGTTTTTTTAA
ATGCACTGCTGACTGTACACCAGGTAAAAGGCAAGGCAGCTATTGATGGT
CTCGGGTCTCGATTGGGCAAGTCCGGGGCTTCTTTCCTGCAGCAGGGGCT
GGTCCTGGCCTTCGGGAACATTCTTAGAGCCGCTCCTTTCGTCGCAGGTG
CAAAAACCATGGTGGAGTTTCGGGAATGACGGCGGCACTTGGATCAATGG
GGATATATTTTCATGTATAATAACCAAATGTACAAGTGTACGGTCGTATT
TTGTCTTCTGATATAATTTAATGTCATCCCCCGGACGAATATCAATACTT
CTTGCAAGACTGCATTTTTTTTTTTTTTACAGTGTTCTGTGCTTGTATCA
CTCATAAATAAAAAAAATACATATCTTAGCGGGGAAGAAAAGGGGGAGGG
GGAAGGAGTTCAGCATTGCTGTAGGCGTTTCGAACTTCAAGGCGGTTTAT
ATGGGAAAATACTAGACCAAACAATGGTGTGTGTGTGTGTGTGTTTTTTT
TGTTTTTTTTTGCATTAAAATGTTGATTTCCGTTGCTGTCTTTTGAGGTT
TGCATCTCCCCTGCCTGACCTTTACTCTGCGCTTTTTATTCCTCTGTGGA
TTCCAACGGTAAAAAATTCCCCCTTCGTTTTCCTTCACTCCTTAGTTTGA
GAAGTCACTTTTACATGCTATTCTTCAGGACCAGTAATGTAAGCTAAAAT
AAAGCACAAGATGCGAAAACGTCGGACCTACGCCCGAACGGGTAGGGTAG
CTCGTCAACTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGT
GCAAGCAACCCCCACACTGCCTCCTTGGTTCGGCCGAACCGGGGTGGCGC
CTACCCCGCAGAGGAATAAATAACTCTGTTCTATTAAAGGAAATGTAGAA
ATACTTCGGTAGAAATATTCAAGTATGGAAGCATTGGTAAAGTTTTTTTT
TTCGGCAAGAGTTCGCTTGTGAAAATGAGTGCGCGGAGAAATGGAAAAGT
TGGATATATTCGCTCGCAGTTAGGTACACGTGATGGATGATAGCTCTCTC
GAGGCATGCATTTGGCGTCGATAACTCCGTCTCCCCGGACAATACTGTCA
TCGGTAAACGTCTAGAAATCAAGTTTCCGACGCCAAACTTTTCACCCTCC
GGACGAGCACGAATACAAGACACAAGTAATTACCGGTACGGTATACTTCG
AACGAATAAAGTCAGTACAATGCTCGATGTACGCTTGACCATCCGAGATG
CCGGACAAATGTTGTAGGCGAAACCTCTCAACTCGAATACCCGGCGAGGT
GTGCATGGTGCTTCCGATTCACTCCGTACTATGTATTCGAAATGGCCGGT
AGTCACTGGTGCTGTATTAGACGCACACTGCCATCGGTATTTGTGTGTGG
ATGAGACTCCGTAATCTTTTTCGGCTGAGTAATTTTTGTACACGGGCAGA
GCAAACACAGCGGGATTATGGTCGAATATTTCCGTGTGGCTGAACACGCG
CAACAATGCTCTTAGTCGAGCATTCCTGCATGAATGAATACCTGTACTTG
AATCCTGAGTAGGGCATTTGTCCAGTTGAAGAAAACTGCTCATGTCCTTT
TCCTGGAGAATTTTCTTTCAGCCTATTCGTATTGACCCCAGGACGAATAC
GTAACGAGCACGAGGCTCGTCACGAATAATGCTACATTTGTACTTATCCG
CAACGTGAATAGTTTTCGACGCGCATAAGGTGCGGCCTTGTACATCTCGA
AACAAGAAAGCAAGAAGCCGGCAGAGTTGACGCAGTCAAGATATCCGTAC
ATCCACTCTCGGGAAGAGTTGTAATGCTCCACCAGAATTGCCTTCCTTAT
CCGAGGATGACTGAAAAGTCAGAGAGGGGTGTTGAATTTTCGTGTCCATT
TTTTGTGACCTTTCCTTATTGACCTAATTTTGGTGATGAGTGTCACTAGT
TCACACCCTGTACGATACGATAAAACACAAATGTTGAAGGTACGATACGC
GGGTGGCTGACCTGCTCAATATATATATCGAATTTACCATACGCGAGTGG
CTAACGTGCTCAATATATATCGAATTTACGATACGCGCAAGGCTGACGTG
CTCAACATATATCGAATTTACGATAAGCGAGTGGCTGACCTGCTCAATAT
ATATTGAATTTACGATAAGCGCGTGAATGACGTCCTCAACATATATCGAA
TTTACGATACGCGCAAGGCTGACGTGCTCAACATGTATCGAATATACGAT
ACGCGCAAGGGTTACGTGCTCAACATGTATCGAATTTACGATACGCGCAA
GGCTGACGTGCACAACATATGCTAAGCGGTACGGTACAACATATCATTCA
ATACAAGTTATCGTAAAATACGAAGTATTATCATATCGTACAAGGTGTGA
AATAATTGCAGATTGTCCACCTCTCCCCTAACTTTTTTCCCTACAGTCAT
CTTCTACGCGGCTCTGGGTTCCTGGACGTACGGCGCTTTCCGTTTGGCCG
AACTGTTCGATGCCAAGACCAGGGAGCAGGAAGCGGCCACTTCAGGCAAA
CGCAGAAGGGGAAGCAGCATACAAAGTAGGGCTTCGAGCACAGAGGAGAA
GGGGCTTTCGGGACAACTTGGATCTAGAACACACGAAAAGTCTAGCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16541:1985..5233-

>mRNA_H-paniculata_contig16541.3722.1 ID=mRNA_H-paniculata_contig16541.3722.1|Name=mRNA_H-paniculata_contig16541.3722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig16541:1985..5233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTACATTCCACTTGACGAGGAGTCGAAGGCAAGAGCAACACATAT
GGCCTACATTCCACTTGACGAGGAGTCGAAGGCAAGAGCAACACATGTAA
AAGGCAAGGCAGCTATTGATGGTCTCGGGTCTCGATTGGGCAAGTCCGGG
GCTTCTTTCCTGCAGCAGGGGCTGGTCCTGGCCTTCGGGAACATTCTTAG
AGCCGCTCCTTTCGTCGCAGGTAAAAGGCAAGGCAGCTATTGATGGTCTC
GGGTCTCGATTGGGCAAGTCCGGGGCTTCTTTCCTGCAGCAGGGGCTGGT
CCTGGCCTTCGGGAACATTCTTAGAGCCGCTCCTTTCGTCGCAGTCATCT
TCTACGCGGCTCTGGGTTCCTGGACGTACGGCGCTTTCCGTTTGGCCGAA
CTGTTCGATGCCAAGACCAGGGAGCAGGAAGCGGCCACTTCAGGCAAACG
CAGAAGGGGAAGCAGCATACAAAGTAGGGCTTCGAGCACAGAGGAGAAGG
GGCTTTCGGGACAACTTGGATCTAGAACACACGAAAAGTCTAGCTGATCA
TCTTCTACGCGGCTCTGGGTTCCTGGACGTACGGCGCTTTCCGTTTGGCC
GAACTGTTCGATGCCAAGACCAGGGAGCAGGAAGCGGCCACTTCAGGCAA
ACGCAGAAGGGGAAGCAGCATACAAAGTAGGGCTTCGAGCACAGAGGAGA
AGGGGCTTTCGGGACAACTTGGATCTAGAACACACGAAAAGTCTAGCTGA
back to top