mRNA_H-paniculata_contig16530.3719.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig16530.3719.1
Unique Name	mRNA_H-paniculata_contig16530.3719.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: D8LSS8_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS8_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 6.490e-105
Identity = 171/215 (79.53%), Postives = 191/215 (88.84%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVVGSVSQV 645
            KVGVEIRVVGNDSGEKLSILPGILARLDRAAP+Y    Y DFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPL KI +ALELIQRGE+V RGT+QTVL+HTAFDEARRLGL  +TEA LRKEFPEETGVLVV +V+PKGPAD +L+PGDVVV M G+ ITTFLPWES LD  VGGEV+V+V+RGGK+++ +L VG +  +
Sbjct:   71 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPEYDTGGYRDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLTKIVRALELIQRGEKVTRGTLQTVLRHTAFDEARRLGLKPDTEALLRKEFPEETGVLVVGEVVPKGPADGVLEPGDVVVRMKGETITTFLPWESALDDGVGGEVEVQVQRGGKEVIARLTVGDLHAI 285

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: A0A662X1B6_9STRA (PDZ_1 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1B6_9STRA)

HSP 1 Score: 244 bits (623), Expect = 7.440e-75
Identity = 126/199 (63.32%), Postives = 156/199 (78.39%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERG 597
            K+GVEIRVVGND+GEKLSILPGILA+LDR AP YG  +YNDFNTFY AAASSTSGGSSGSPVL +DG A+ALN G   + A++FYLPL ++ +AL  IQ+G+ V RGT+QT+ +HTAFDE RRLGLS+ETEA +R+ FP+ETG+LVV+QVI  GPA + L  GDV++   GQ  T FL  E +LDS VG  ++ +  RG
Sbjct:  159 KIGVEIRVVGNDAGEKLSILPGILAKLDRDAPSYGSGTYNDFNTFYFAAASSTSGGSSGSPVLNIDGCAIALNAGGAKKAASSFYLPLDRVVRALARIQQGQPVPRGTLQTIFRHTAFDEVRRLGLSAETEAVVRQRFPQETGMLVVDQVIQGGPAHDQLRTGDVLIQFAGQYETAFLSIEKFLDSHVGDTLEAQFRRG 357

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: K3X1C9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1C9_GLOUD)

HSP 1 Score: 248 bits (633), Expect = 3.480e-73
Identity = 129/215 (60.00%), Postives = 163/215 (75.81%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVVGSVSQV 645
            KVGVEIRVVGND+GEKLSILPGILA++DR AP YG  +YNDFNTFY AAA   SGGSSGSPVL +DG A+ALN G   + A++FYLPL ++ +AL+L+Q+G  V RGT+QT+ KHTAFDE RRLGL +ETEA LR +FP ETG+LVV+QVI  GPAD+ L  GD+++   GQ  TTFL  E +LDS V   V++E +RGG   + ++ VG +  +
Sbjct:  159 KVGVEIRVVGNDAGEKLSILPGILAKVDRDAPSYGSNTYNDFNTFYYAAAXXXSGGSSGSPVLNIDGCAIALNAGGAKKAASSFYLPLDRVVRALKLVQQGLDVTRGTLQTIFKHTAFDEVRRLGLQAETEAVLRAQFPAETGMLVVDQVIQHGPADQKLQTGDILIKFAGQYETTFLNIEEFLDSHVEQNVEIEFQRGGMTHVVEVEVGDLHAI 373

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: A0A8K1FES9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FES9_PYTOL)

HSP 1 Score: 248 bits (633), Expect = 4.090e-73
Identity = 127/209 (60.77%), Postives = 160/209 (76.56%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVV 627
            ++GVEIRVVGND+GEKLSILPGILA+LDR AP YG  +YNDFNTFY AAA  TSGGSSGSPVL +DG A+ALN G     A++FYLPL ++ +AL+ IQ+GE V RGT+QT+ +H AFDE RRLGL + TEA +R+++P+ETG+LVV+QV+  GPAD  L  GDV++  N Q  TTFL  E YLDS V G V VE +RG + + T+L +
Sbjct:  178 QIGVEIRVVGNDAGEKLSILPGILAKLDREAPSYGSNTYNDFNTFYYAAAXXTSGGSSGSPVLNIDGCAIALNAGGAKRAASSFYLPLDRVVRALQFIQKGESVPRGTLQTIFRHIAFDEVRRLGLGAATEALVREKYPQETGMLVVDQVVQGGPADGKLQTGDVLIKFNDQYETTFLQIEDYLDSHVEGTVTVEFQRGSETLTTELTI 386

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: W2X363_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2X363_PHYPR)

HSP 1 Score: 234 bits (596), Expect = 1.000e-72
Identity = 120/202 (59.41%), Postives = 153/202 (75.74%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKK 606
            K+G EIRVVGND+GEKLSILPGILA++DR AP YG ++YNDFNTFY AA     GGSSGSPVL +DG A+ALN G   + A++FYLPL ++ + LELIQ+G+ V RGTIQT+ +HTAFDE RRLGL  ETEA +R++FP+ETG+LVV+QVI  GPA + L  GDV++   GQ   TFL  E YLD+ VG  V+ + + G ++
Sbjct:  147 KIGAEIRVVGNDAGEKLSILPGILAKMDRDAPSYGSSTYNDFNTFYYAAXXXXXGGSSGSPVLNIDGCAIALNAGGAKKAASSFYLPLDRVVRVLELIQQGKPVPRGTIQTIFRHTAFDEMRRLGLPGETEALVRQQFPQETGMLVVDQVIQGGPAHDQLRTGDVLIKFGGQYGATFLTVEEYLDAHVGETVEAQFQHGDEQ 348

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: A0A1V9ZKT9_9STRA (Pro-apoptotic serine protease-like protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZKT9_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.490e-72
Identity = 126/210 (60.00%), Postives = 166/210 (79.05%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRG-ERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVV 627
            KVGVEIRVVGND+GEKLSILPGILA+LDR AP+YG + YNDFNTFY AAAS TSGGSSGSPVL +DG+A+ALN G   + A++FYLPL +  +AL+LIQ+G   + RGT Q + +H A+DE R+LGLS++ EA +R++ P+ETG+LVV+QV+PKGPA  +L+PGDVV+ + GQL TTFL  E  +D+ VG  + V+++RGG+ +   L V
Sbjct:  139 KVGVEIRVVGNDAGEKLSILPGILAKLDREAPNYGTSGYNDFNTFYYAAASXTSGGSSGSPVLNIDGEAIALNAGGAKKAASSFYLPLDRAVRALKLIQQGIVDIPRGTWQAIFRHAAYDEVRKLGLSADVEADVRRKLPDETGLLVVDQVLPKGPAFGLLEPGDVVIRIQGQLETTFLAMEELVDANVGNVIAVDIQRGGEPLTVHLTV 348

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: I1CEB0_RHIO9 (Pro-apoptotic serine protease NMA111 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CEB0_RHIO9)

HSP 1 Score: 246 bits (629), Expect = 1.530e-72
Identity = 128/215 (59.53%), Postives = 163/215 (75.81%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVVGSVSQV 645
            KVG++IRVVGND+GEKLSIL G ++RLDR  PDYG  +YNDFNTFYL AASSTSGGSSGSPV+ ++G AVAL  G     A  F+LPL ++ +AL  IQRGE+V RG IQT+ ++  FDEARRLGLS ETE  LR+ FPEE GVLVV+ V+P+GPA  +L+ GD++VSMNG+ IT F+P+E  LD+ V  E+ V +ERGGK +  K+ VG +  +
Sbjct:  188 KVGLDIRVVGNDAGEKLSILAGSISRLDRNTPDYGELTYNDFNTFYLQAASSTSGGSSGSPVIDINGNAVALQAGGSERAATDFFLPLDRVKRALGFIQRGEQVPRGDIQTIFRYRPFDEARRLGLSGETETKLRELFPEEIGVLVVDAVVPEGPAYRLLEEGDILVSMNGEYITKFVPFEDMLDNHVDKEITVRIERGGKPMEFKIHVGDLHAI 402

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: A0A5D6Y2Q7_9STRA (Pro-apoptotic serine protease NMA111 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2Q7_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.740e-72
Identity = 130/215 (60.47%), Postives = 162/215 (75.35%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVVGSVSQV 645
            KVGVEIRVVGND+GEKLSILPGILA+LDR AP YG  SYNDFNTFY AAA   SGGSSGSPVL +DG A+ALN G   + A++FYLPL ++ +AL LIQ   +V RGT+QT+ +HTAFDE RRLGL ++TEA +R+ FP ETG+LVV+QV+  GPA + L  GDV++   G + TTFL  E YLDS VG  V+VEV+RGG   +  + VG + ++
Sbjct:  156 KVGVEIRVVGNDAGEKLSILPGILAKLDRDAPSYGSNSYNDFNTFYYAAAXXXSGGSSGSPVLDIDGCAIALNAGGAKKAASSFYLPLDRVVRALRLIQSDLQVPRGTMQTIFRHTAFDEVRRLGLPADTEAVVREHFPAETGMLVVDQVVQDGPAHQKLQAGDVLIKFAGTVETTFLNIEEYLDSHVGRSVEVEVQRGGTAHVVTIPVGDLHEI 370

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: A0A534DZ66_9GAMM (PDZ_6 domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534DZ66_9GAMM)

HSP 1 Score: 234 bits (598), Expect = 2.700e-72
Identity = 121/215 (56.28%), Postives = 159/215 (73.95%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKKIMTKLVVGSVSQV 645
            ++G EIRVVGN++GE+LSIL G LARLDR AP YG A YNDFNTFYL AAS TSGGSSGSPV+ + G+ VALN G     A++FYLPL ++ +ALELIQ+G+ V RGT+ TV  +  +DE  RLGL + TEAA+RK FP  TG+LVV +V+P   ++ +L PGD++V +NG+ +T F P E  LD +VG +V+VE+ERGGK +  KL VG +  +
Sbjct:  192 QIGREIRVVGNNAGEQLSILAGTLARLDRDAPAYGVAKYNDFNTFYLQAASGTSGGSSGSPVIDIRGRVVALNAGGANGAASSFYLPLGRVRRALELIQQGKPVARGTLYTVFNYMPYDELERLGLDAATEAAVRKSFPRNTGMLVVTEVLPGSTSESVLQPGDILVRLNGRYVTQFEPLEDVLDGSVGKQVEVELERGGKAVSAKLPVGDLHAI 406

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BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Match: W2Q7U3_PHYPN (PDZ_1 domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q7U3_PHYPN)

HSP 1 Score: 236 bits (602), Expect = 2.860e-72
Identity = 121/202 (59.90%), Postives = 154/202 (76.24%), Query Frame = 1

Query:    1 KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAASSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQRGERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQVIPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGGKK 606
            K+G EIRVVGND+GEKLSILPGILA++DR AP YG ++YNDFNTFY AA     GGSSGSPVL +DG A+ALN G   + A++FYLPL ++ + LELIQ+G+ V RGTIQT+ +HTAFDE RRLGL  ETEA +R++FP+ETG+LVV+QVI  GPA + L  GDV++   GQ   TFL  E YLD+ VG  V+ + +RG ++
Sbjct:  147 KIGAEIRVVGNDAGEKLSILPGILAKMDRDAPSYGSSTYNDFNTFYYAAXXXXXGGSSGSPVLNIDGCAIALNAGGAKKAASSFYLPLDRVVRVLELIQQGKPVPRGTIQTIFRHTAFDEVRRLGLPGETEALVRQQFPQETGMLVVDQVIQGGPAHDQLRTGDVLIKFGGQYGATFLTVEEYLDAHVGETVEAQFQRGDEQ 348

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig16530.3719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LSS8_ECTSI	6.490e-105	79.53	PDZ domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A662X1B6_9STRA	7.440e-75	63.32	PDZ_1 domain-containing protein (Fragment) n=1 Tax...	[more]
K3X1C9_GLOUD	3.480e-73	60.00	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A8K1FES9_PYTOL	4.090e-73	60.77	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
W2X363_PHYPR	1.000e-72	59.41	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A1V9ZKT9_9STRA	1.490e-72	60.00	Pro-apoptotic serine protease-like protein n=3 Tax...	[more]
I1CEB0_RHIO9	1.530e-72	59.53	Pro-apoptotic serine protease NMA111 n=1 Tax=Rhizo...	[more]
A0A5D6Y2Q7_9STRA	1.740e-72	60.47	Pro-apoptotic serine protease NMA111 n=1 Tax=Pythi...	[more]
A0A534DZ66_9GAMM	2.700e-72	56.28	PDZ_6 domain-containing protein (Fragment) n=1 Tax...	[more]
W2Q7U3_PHYPN	2.860e-72	59.90	PDZ_1 domain-containing protein n=6 Tax=Phytophtho...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig16530	contig	H-paniculata_contig16530:181..5641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	337.8
Seed ortholog evalue	3.7e-90
Seed eggNOG ortholog	2880.D8LSS8
Preferred name	DEG7
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009892,GO:0010109,GO:0010205,GO:0016787,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0042548,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1905156
EggNOG free text desc.	serine-type endopeptidase activity
EggNOG OGs	COG0265@1,KOG1421@2759
Ec32 ortholog description	PDZ domain
Ec32 ortholog	Ec-15_002760.1
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	4
Model size	645
Cds size	645
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig16530.3719.1	prot_H-paniculata_contig16530.3719.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig16530 181..5641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929316.023942-CDS-H-paniculata_contig16530:180..233	1622929316.023942-CDS-H-paniculata_contig16530:180..233	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 181..233 +
1691480812.457465-CDS-H-paniculata_contig16530:180..233	1691480812.457465-CDS-H-paniculata_contig16530:180..233	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 181..233 +
1622929316.0337687-CDS-H-paniculata_contig16530:1761..1912	1622929316.0337687-CDS-H-paniculata_contig16530:1761..1912	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 1762..1912 +
1691480812.471119-CDS-H-paniculata_contig16530:1761..1912	1691480812.471119-CDS-H-paniculata_contig16530:1761..1912	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 1762..1912 +
1622929316.0461295-CDS-H-paniculata_contig16530:3099..3342	1622929316.0461295-CDS-H-paniculata_contig16530:3099..3342	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 3100..3342 +
1691480812.4804225-CDS-H-paniculata_contig16530:3099..3342	1691480812.4804225-CDS-H-paniculata_contig16530:3099..3342	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 3100..3342 +
1622929316.0558317-CDS-H-paniculata_contig16530:5443..5641	1622929316.0558317-CDS-H-paniculata_contig16530:5443..5641	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 5444..5641 +
1691480812.4897451-CDS-H-paniculata_contig16530:5443..5641	1691480812.4897451-CDS-H-paniculata_contig16530:5443..5641	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16530 5444..5641 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig16530:181..5641+
coding sequence from alignment at H-paniculata_contig16530:181..5641+

protein sequence of mRNA_H-paniculata_contig16530.3719.1

>prot_H-paniculata_contig16530.3719.1 ID=prot_H-paniculata_contig16530.3719.1|Name=mRNA_H-paniculata_contig16530.3719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
KVGVEIRVVGNDSGEKLSILPGILARLDRAAPDYGGASYNDFNTFYLAAA
SSTSGGSSGSPVLTVDGKAVALNCGARVETAAAFYLPLPKIAKALELIQR
GERVWRGTIQTVLKHTAFDEARRLGLSSETEAALRKEFPEETGVLVVNQV
IPKGPADEILDPGDVVVSMNGQLITTFLPWESYLDSAVGGEVKVEVERGG
KKIMTKLVVGSVSQV

mRNA from alignment at H-paniculata_contig16530:181..5641+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig16530.3719.1 ID=mRNA_H-paniculata_contig16530.3719.1|Name=mRNA_H-paniculata_contig16530.3719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5461bp|location=Sequence derived from alignment at H-paniculata_contig16530:181..5641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTTGGGGTGGAAATCCGAGTTGTTGGCAACGATAGCGGCGAAAAATT
AAGGTGCGCCGATTCTGAAATATTCTGCAGTGAAGCGCAGATAGACATCG
GTTGACACGCACACACCATTTATGGTTGACCGCAACCCCTGCCCCGTAGA
CAAGAAAGGTGGAGCCGTTTTGAGTTTTGAGTTTTGAGTTTTGAGCCACG
TTAGGAAATGAAATCAAGACCACATGAAGCGATTGATCATGATCCAACGG
AGGCTAAATGCTCATGTTTTATTACGTGAACGATTTTTCGTCCTCTCAGG
GATGTACGTACACCTCCCTAGTGATGTTTTTTTTTTTTTGCGGATAAACG
TTAAACACCTGCAGACTGCACTGAGCTGTACAATCTCTACATGTGTACAG
TTGAGTTATTATGTGAGCTTCAGAGCTATAGTTCAACTGACATGAACCCC
CCCCCCCCCCCCCTCACCCTCACCCCCCTCCTGGTCGTTACAGTTCCTCT
AAAATGTATGTTTTGCCGCGATTGATCGTTGGCCACATAACGCCAGGGAG
CATATGATGTAACGCACGAAAGGGACTTTACAGATTGCTTGATTGTGACA
TGACAATACCCTAGAAACGGGTTCGTAAACCGATCAGTGATGATCCACAA
GGTAAAGTGTATCCGTTGTGCATGTTAGTCATTTGTAGTACAGTAAGTCA
CGATGCTTATGTCAGTTATACATACATGCGATGACCCCACCCCCCCTGTT
TCTCCAATTTTTACTTATAAGTGTTCATTGTACGCGAAGTCGATATTAGT
CAAGCTTTCCAATCTCGGTATGTGTCCAACAAAAAACAATCTGCATGTTG
TATACGGTCTGCCGTGAGTGGGTTGTTCATCGATGAACGACAGATCGCAG
GTCAAGTATTATAGTTCTGTTGTGTATTGTCAGGTGTTCGGTACTCACTT
GTAGGTCATGCTCACCATATGGACAGTAAACACACTCGCACACAGACCCA
CAAGACACACGTTATTTCATTTAGATTCCCTGGGCCACCTCTGATTCTGT
CATTTTCGGTAAAATTTCTGTAAAGTATAGGTGCACAACAGATATTCCAG
GGGGCGGGCGCATCCATAAGATAGTACTTGACCTACATAGCATGGGGTTG
CGGGAACAGAGTTGAAGCTATGACATTGACTTTGTACTGTGCGCAAGTTC
TCTACTAAAGCGGCTTAACTTCGGGAAGGTGGCTTTTGGACGTGAACGGG
TTGTCTTCGTGTGTCTAGTCAGGTGTTTTTATAGCTTGTCTACGTCATAT
GTTACGTCATGTCATGTCATGTTATGTCATTCATACACAGGGAGTGCGTT
TGTACGTTGAATTTTTCTGGTGGAGGCAGTTGTCCGTGTTGTGCCCTATA
ATTCGAACCCCCTCCCCCGATTTGATGTAATTTTACTAATGGGTGGGTGT
ATCCAACTGAGAGGTATAACTACATGACCTTAACGTGAGTGCCATGGAGA
TATTTTTTATGATGAAAGATGTAGGTGAAGCTTCTACGCCGCCGTCACAA
CCTACTACACACTACCTACCCCCTTCCGCAGCATCCTTCCTGGTATCCTA
GCCCGGCTCGACCGCGCCGCTCCAGACTACGGAGGGGCTTCGTATAATGA
CTTCAATACCTTTTACCTGGCAGCAGCGAGCTCAACCAGCGGGGGTAGCA
GCGGTAGCCCGGTCCTCACCGTGGATGGAAAGGTAAAACTGTTCTGTGGG
TAGACGATGGTTGGTTGGTTGGTTGGATGGATGACTTGTGAGTGACGGAA
TAAATTGGTTCGTAAATTTTAAGTAAGAAGTATTTACCGCCCTTGGTTGA
ACACGATGGTTGAGGTACACTAAATCACCAATACCAGTGTACCCAGAAAG
CTATCAGAATGTTCTGGCCTGGGTTGGTTTTGAGTTGTGTCTGCAAAAGC
CAGCTGTTGCTTAAATCCAGGCCTGGCGGTCGCCGATTTGAGCTCTGCCA
ACGCATACTGCACCGAAGGGGTCGGGAGGTGGGTATTAGGGGGGTGAGAG
TTAGGGTTACCGTTACTTCCAGCGTTGGCCCTGCTCGCGTCCCGTCGGGG
GCACCACGAAGCGTGAACCATAGAAGCAAAAAAAACTGTCAACCATCGTG
TTCGAGCAAGTGGTGAAGAGGGCTTAAACACGGAGTTACCTTTGTTGGGA
AAGGACATATTGGTGGAGCCAATCCTTAGCCTTGGAGGAGTTTTGATTGA
CAGGAAGCGACAGCATTGAGACGTGTTTCGAATGTGGGTCGGAGGTGAAA
GATTTTGTTACTGACAGGTGTTCGTTTATTCACACGTTGTATTTTCAAGT
ACTGTTCTAGAGTTGTAGGTGTGGATGGATGACCGGGTGAGTGGAGAGCG
AATCGGTCGATGAATTATGAAAGTATGTGGGTTATTGAGTTTGAAAGGGA
TGTTCGTTGAGGCAAAATCTTGGGGTGGAGTTGATTGCAAGGATGGATGA
AAGGATGGATGCATGGATATAGATAATATGGATGAGGTTGAAATGATTTT
GTTAGGTCCATTTGATTTTTGGGCATTTGGTCGTTTGTTAACAAGGGGTT
TGACTGGTTTAGTCAGTGCATAATCTTAAACGTGTACAATGTGCACATGC
TCCCCTCCAACTCCCCACAGTTTCCCTGAGATTATCGCCGTGGTTGCCCG
TTGCTCAGTCTAGGCCCCAAATGCTCACTTTTGAAAAAATATATTATTAT
TCTTTTTTTATTTTTTATTTTTTAATGTTTTTGCTTCGTTTGTGGGTGGG
GTGGGGGATCGACGGAAACCGACGGAAACCGACGGAAACGGACCGACATC
GACGGAAAAATGGTCGGCAATATCGACGGGAACCGGATGCGATGGGTTCC
GCCTGCTTCACGAAGAAAGGCGGTTGCCTTGAATTGTGGAGCACGTGTGG
AAACAGCGGCCGCGTTTTACCTGCCCCTGCCCAAGATCGCGAAGGCGCTG
GAGCTGATCCAGAGGGGGGAGAGGGTGTGGCGAGGCACGATACAGACGGT
GCTGAAGCACACGGCGTTCGACGAGGCCCGGCGGTTGGGCCTGTCGTCGG
AGACGGAGGCCGCACTGCGGAAGGAATTCCCCGAAGAAACGGGGGTTCTT
GTTGTCAACCAGGTATGTAATAGATGTACCGGTAGGTGTTTTGTTGGGTG
TATTTTATAAGTATTTTTTTTTTTTAATTATTCCGCCATTTTATGCCCTG
TTTTGGCTTATTACTACTTACGGCCTACGACTGTCTGTGTTGTCTTACAT
TTTTGTTTGAACAAATCGTTGGTCGATGATGCAATTATATATATATATAT
ATTTCATTCCTTTGCCCGCGACGGACAGTCGTGGAAAGTAACCCTCTCTA
TACAGGGTGCATTGTCCCTCCTCTTTTTTTTTTATCTCTAATCCACATGA
TGAGAGAATACCCTGAACAGGCAAGGATTGAGATAAGACAGGGTGTTTTT
TTTGTGTTTTTTTTGTGTGTTTTTTGTGTTTTTTTAACCCCCGGAAGGCT
GAGGCAAAAGCCTTTACCGATGCTTCCATACTTAAGTATTTTACCCAAGT
ATTTCTATATTTTCTTTAACAGAACATAGTTGTTTATTCCTCTGAGGGGT
AGGCGCCACCCCGGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGACAGGG
TGGGTACATTTGGTTTTAGCCACGTTTGGGAATGTAGGAAATCGCGATGG
GCCATCGGAAAATCGCTCTGATGGAATCAAAGCTCCTTCCCACCAAGGAC
ACGTCGTCAATGGTCTAGCATCTACAGCATGCAAAATATGAGCACGCCCC
CCCTCCCCCCCCCGAGACTTCGTGTGTTGTTGGCAAGAGAGGCTTATAGG
AGTAACCGGCTTGGACCCACTGGCGATGTGAAAGTATCCGTCCTATTTCT
TGACAGTCCTTTCCGTTGGTGTTACGCGGATTCACGTCATCGGAAGGTCT
AGGTTTCATCCGTTCGATCGTATGTCCGGTTGATTTCTTTGCCATTCTTG
CGATTTTTCGTGCTTTGATATTTTTGTGGTGATTGGTCTGGGATTCCAAC
ACATGACCTCATGGACTAGAGTTGGATACGACATTTTATCTCCGTGTTGC
TGGTGTGAAAATAGCACAGTTCGGATATAGGGCTTTATTTTCAAGTCAAA
ATACAACTCAAAGAACTTTCAATATTTGATATTCAAAAACAGAAGAACGT
GCGGAGGTGTGTTCTCCCTGTTCTAGAATCGAGGACTTGCATTCTCCGGA
CAAAAACGAATACTTGCAAATGGTTTTCACAAAAAAACCCCGAAGATATT
CGCCTGAGTTTCAGAATAAGCTGTTGTATTGTATGTGCACCGCGCCATCC
ACGACTGCTAATAATACTCCTAAATCGAACGGACAGAGGTGGATACTTCA
TTCTGAAAAAGCAGGCGAATACGTTCAGTTTTTCGTGAAAACCATTTTCA
AAGTATTCATATTTGTCCGGGAGGTGAACACACTTGACGAGGTCGTGAAG
GGCCTTCAGCTTCTATCGGTTCGAAAGGTGTTGGAAAGCTCCAAGTATTC
TCATGCTGCCATAGCGACGTTCAGAATTTCCCGATTATTTTCATTGAGGG
TCATCGACCGTCATTTGAGGGGTGTAAAATAGGGGTTTTGAGGCCTCGAC
GGACACTTGCGGGAGTTAACCTTTTCCTATAGGGTGTTCAATCTCCACAT
AATCCTCTCTTTATATAGCAGGTGTCCCACAGACATGGGCAGGCGGTTAT
TACGTACGTCAAGCACAGAGATACGGTAGTAAGATGCAATAAAACAAACA
AGGAGATGTGCCGTGTGGTCAAGATAATGTTTGGGCGGTCGCTTTTGCAG
GAGTCATACTCCAAAATTTCCCCTGCCCTTTCCCCCCCCCTTCCCCCCCC
CCCCCCCCCCCCCCCGTAGCCCCCCCCCCCCCCCCTGATTTGGTTTGAGT
TTGCTGGTCAGTGTGCAGTACATAGCTGAGCTTTCAGGTTGGTCTCGTCT
CCATAACATCAAAATGGGCGGAATGATCGTCTCAATCTTTTAGGCTCGAC
TTTTTTGTTTGTGATGTCCTTTTTTTCATAATTCCCCGAAAATATTATTT
GTGTGTGTGTGTGTGTGTGTTTCCAACGCCCTGTTGAAGTACACAGGTGT
GCAATAATACAGATTCAAAAAAATGATCCCTAGAAACTAACTAACAAATA
AACTGCCGACCAGGTGATACCCAAGGGCCCAGCCGACGAGATATTGGATC
CAGGAGACGTGGTGGTGAGCATGAATGGACAGCTGATTACCACGTTCTTG
CCCTGGGAGAGCTACTTGGACTCGGCCGTCGGGGGAGAGGTGAAAGTGGA
GGTCGAGCGGGGCGGGAAGAAGATCATGACCAAGCTCGTCGTCGGGTCAG
TCAGCCAAGTT

Coding sequence (CDS) from alignment at H-paniculata_contig16530:181..5641+

>mRNA_H-paniculata_contig16530.3719.1 ID=mRNA_H-paniculata_contig16530.3719.1|Name=mRNA_H-paniculata_contig16530.3719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig16530:181..5641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTTGGGGTGGAAATCCGAGTTGTTGGCAACGATAGCGGCGAAAAATT
AAGAAAGTTGGGGTGGAAATCCGAGTTGTTGGCAACGATAGCGGCGAAAA
ATTAAGCATCCTTCCTGGTATCCTAGCCCGGCTCGACCGCGCCGCTCCAG
ACTACGGAGGGGCTTCGTATAATGACTTCAATACCTTTTACCTGGCAGCA
GCGAGCTCAACCAGCGGGGGTAGCAGCGGTAGCCCGGTCCTCACCGTGGA
TGGAAAGCATCCTTCCTGGTATCCTAGCCCGGCTCGACCGCGCCGCTCCA
GACTACGGAGGGGCTTCGTATAATGACTTCAATACCTTTTACCTGGCAGC
AGCGAGCTCAACCAGCGGGGGTAGCAGCGGTAGCCCGGTCCTCACCGTGG
ATGGAAAGGCGGTTGCCTTGAATTGTGGAGCACGTGTGGAAACAGCGGCC
GCGTTTTACCTGCCCCTGCCCAAGATCGCGAAGGCGCTGGAGCTGATCCA
GAGGGGGGAGAGGGTGTGGCGAGGCACGATACAGACGGTGCTGAAGCACA
CGGCGTTCGACGAGGCCCGGCGGTTGGGCCTGTCGTCGGAGACGGAGGCC
GCACTGCGGAAGGAATTCCCCGAAGAAACGGGGGTTCTTGTTGTCAACCA
GGCGGTTGCCTTGAATTGTGGAGCACGTGTGGAAACAGCGGCCGCGTTTT
ACCTGCCCCTGCCCAAGATCGCGAAGGCGCTGGAGCTGATCCAGAGGGGG
GAGAGGGTGTGGCGAGGCACGATACAGACGGTGCTGAAGCACACGGCGTT
CGACGAGGCCCGGCGGTTGGGCCTGTCGTCGGAGACGGAGGCCGCACTGC
GGAAGGAATTCCCCGAAGAAACGGGGGTTCTTGTTGTCAACCAGGTGATA
CCCAAGGGCCCAGCCGACGAGATATTGGATCCAGGAGACGTGGTGGTGAG
CATGAATGGACAGCTGATTACCACGTTCTTGCCCTGGGAGAGCTACTTGG
ACTCGGCCGTCGGGGGAGAGGTGAAAGTGGAGGTCGAGCGGGGCGGGAAG
AAGATCATGACCAAGCTCGTCGTCGGGTCAGTCAGCCAAGTTGTGATACC
CAAGGGCCCAGCCGACGAGATATTGGATCCAGGAGACGTGGTGGTGAGCA
TGAATGGACAGCTGATTACCACGTTCTTGCCCTGGGAGAGCTACTTGGAC
TCGGCCGTCGGGGGAGAGGTGAAAGTGGAGGTCGAGCGGGGCGGGAAGAA
GATCATGACCAAGCTCGTCGTCGGGTCAGTCAGCCAAGTT