prot_H-paniculata_contig16503.3708.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16503.3708.1
Unique Nameprot_H-paniculata_contig16503.3708.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length83
Homology
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BLAST of mRNA_H-paniculata_contig16503.3708.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.510e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:   12 RRRLLMRQLDSKVMTPNQDPDEYLTQIFHLRDELEYIGETFSEARIMDIILQGLTDGYDQIKFA 75
            RRR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIILQGL   Y  I  A
Sbjct:  250 RRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGA 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16503.3708.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE9.510e-743.75Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..80
e-value: 1.8E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16503contigH-paniculata_contig16503:5040..5288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16503.3708.1mRNA_H-paniculata_contig16503.3708.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16503 5028..5288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16503.3708.1 ID=prot_H-paniculata_contig16503.3708.1|Name=mRNA_H-paniculata_contig16503.3708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MCEKYLNSSMQRRRLLMRQLDSKVMTPNQDPDEYLTQIFHLRDELEYIGE
TFSEARIMDIILQGLTDGYDQIKFAVERDPDFS
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