mRNA_H-paniculata_contig16484.3694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16484.3694.1
Unique NamemRNA_H-paniculata_contig16484.3694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 4.400e-48
Identity = 86/128 (67.19%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:    1 QILTFGKELEIMGIQRWEQEAMMLAGSMLGLARLFLLLRFHPRLSLVTDVLASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTMTRTAFGEFDNIYPEMVDINPDAAFLIIATYQ 384
            Q+  F +EL ++ ++RW+++A  +AGS+ GL RLF++LRFHPRLSLVTDVL +S VHLVHFFIMFFMVV VYSN+ W+IFG SS LFATWT +FVTMTR A GEFDNIYP MV+I+  AAF+II TYQ
Sbjct:  206 QVRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQ 333
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BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Match: A0A7S2WU56_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WU56_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.130e-5
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   82 MLGLARLFLLLRFHPRLSLVTDVLASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTM 291
            ++   RLF    FHPRL  +T  + ++ VHLVH F++ F+++  Y+ +G+I+F  +S  F ++ AA  TM
Sbjct:  245 LISFLRLFKYFEFHPRLGAITRTITTAYVHLVHIFLVLFLLMLGYATIGYIVFAQTSPNFHSFGAALGTM 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2W7_ECTSI4.400e-4867.19Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A7S2WU56_9STRA7.130e-537.14Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16484contigH-paniculata_contig16484:487..2362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FTQ6
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.0869539-CDS-H-paniculata_contig16484:486..6521622929314.0869539-CDS-H-paniculata_contig16484:486..652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16484 487..652 -
1691480811.4377716-CDS-H-paniculata_contig16484:486..6521691480811.4377716-CDS-H-paniculata_contig16484:486..652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16484 487..652 -
1622929314.101577-CDS-H-paniculata_contig16484:2144..23621622929314.101577-CDS-H-paniculata_contig16484:2144..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16484 2145..2362 -
1691480811.447494-CDS-H-paniculata_contig16484:2144..23621691480811.447494-CDS-H-paniculata_contig16484:2144..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16484 2145..2362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16484.3694.1prot_H-paniculata_contig16484.3694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16484 487..2362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16484.3694.1

>prot_H-paniculata_contig16484.3694.1 ID=prot_H-paniculata_contig16484.3694.1|Name=mRNA_H-paniculata_contig16484.3694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
QILTFGKELEIMGIQRWEQEAMMLAGSMLGLARLFLLLRFHPRLSLVTDV
LASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTMTRT
AFGEFDNIYPEMVDINPDAAFLIIATYQ
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mRNA from alignment at H-paniculata_contig16484:487..2362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16484.3694.1 ID=mRNA_H-paniculata_contig16484.3694.1|Name=mRNA_H-paniculata_contig16484.3694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1876bp|location=Sequence derived from alignment at H-paniculata_contig16484:487..2362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCCTTACATTCGGCAAAGAGTTGGAAATTATGGGCATACAGCGCTG
GGAGCAAGAGGCAATGATGCTGGCCGGGAGCATGTTGGGCCTCGCGAGGC
TGTTCTTGCTGCTCCGGTTTCACCCCCGCCTGTCGCTGGTCACGGATGTT
CTTGCTTCGTCCATGGTTCACCTGGTGCATTTCTTCATCATGTTTTTCAT
GGTGGTGGCCGTTTACAGGTACGTACCTTTACTGTTGACCTTCAGTCCGG
CCCGTGTTAGACCCCGGCCCACGTGAAGGCATCTCCTATTGTAGTTATTA
ATAGTGCCTCTGTGACGCAACTTGAACCCTACCTAACGCACAGTAAGTAT
ACGTTGCTGACTTCAGCAAGGGGTGCGTTCACAGGGTAAACGCGAGGGAC
ACGAATCTGCTGCTTGTTAGACTCGGTGAACACGATGCGTGGAACAGTAG
CGTTGAACGATGGCTGTAATGCCAGCAGCACGGAGTCGGTGCTTGGTTGC
AACTTGTTTAGCATCGTCAGTCAAACGTGGGAGGACTGAGGTTATTATGG
GATACGGTTACAGGTGAACAAGGCCAGGTAGGCGACCTCGGTATTCGGAC
ACGGTACTCGTGTTTCGATCGGTTTAATTCAGCACTGCGACGTACTCGAG
TAGAGTATGTCTAGTTCTGTACGTGCCAAGAGAATTGCTTTCGTTTTATT
ATTACTTGTTTTACACTGTGTTTGAGATGGCTTTCGGAAGGAGATATATA
TATATGTAGTTTGCCGTCTGTCGGATCTGTTTAGGGGCGATTTTTTCTCG
CTTGCGATTGCCTTTCACTTGCCAACAGCCAGGTCCCGAGTCTGTAGATG
GCCAGAAGGCAAGTATTTATAGTGAAGAGGTATTCAACGTGCATATATAC
GGATGCGGGCCAAAAACGTCCTCAAACGATGCTAGTAGAAATACGGAACA
GTCGTGTACCTGAATTTTTGAAGTAGCATGGGTTCTTCTGTTTTGTGGAG
AAGCTTTTTTGGTCTGCTATTCGGGCAGGAGAAGGAGAGATGAATTAGCA
ATAGCGGTGGTCAAGAGGAGAAGGTGTCAATGGTGCTCTCATCGATCGGT
GTTTGTCCTATAAGATACGTTTTTTTTCGCATCAAATATGGTTGTTCACA
AGGTGAAAAGTATACTTCATCTTGCCCAGTGGATTGCACCATCCAGCACA
TGTAATGTATTTTCTCCACCAACTGATGATAAAAATAGCACGTCTCTTTT
TTTGGTCCGTGTTTTTTTTTTTTTTTTTTCGATTTTAGATGATGACTCAT
TTGTTCGATATCGCTATATTTTCAAATCACAAAATTATGTTGCAGATAAG
GTACATTGCTAACTAAATCTTACGCAGGTGTACCTTTAGAGGGTGTTGAC
ATTCGTTTTGTTTGGTCGACTCGTAAGAAAAATGAAGCAGCCGTGGGTGC
TCATAGGTCTGTACTCAGTTTGTTGGAAGTCAATGTTATAGGAAATTTTA
AAATATATATTTTGCGATGGTCGTTGTGCGGCGTGGTCCTCGCCACCCGA
GCGGAGCCGAACACCAACTACACACCAACCCTTTCCGGTTAGTACCTCGA
AGACTTCCTGGTTGTCATTCATGCTACAATTTGTATCAATACGATGAATA
TGTTGATGAAATATGTATCGATGGACCAACTTTTATCCCGGCTTGCTTGA
CTCACTGCAGCAACGTGGGCTGGATAATCTTCGGGGCTTCAAGCGACCTG
TTCGCCACATGGACGGCTGCCTTCGTCACCATGACCCGCACCGCGTTCGG
AGAGTTCGATAACATCTACCCTGAAATGGTTGACATCAACCCTGATGCCG
CCTTCCTCATTATCGCGACTTACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16484:487..2362-

>mRNA_H-paniculata_contig16484.3694.1 ID=mRNA_H-paniculata_contig16484.3694.1|Name=mRNA_H-paniculata_contig16484.3694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig16484:487..2362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCCTTACATTCGGCAAAGAGTTGGAAATTATGGGCATACAGCGCTG
GGAGCAAGAGGCAATGATGCTGGCCGGGAGCATGTTGGGCCTCGCGAGGC
TGTTCTTGCTGCTCCGGTTTCACCCCCGCCTGTCGCTGGTCACGGATGTT
CTTGCTTCGTCCATGGTTCACCTGGTGCATTTCTTCATCATGTTTTTCAT
GGTGGTGGCCGTTTACAGCAGATCCTTACATTCGGCAAAGAGTTGGAAAT
TATGGGCATACAGCGCTGGGAGCAAGAGGCAATGATGCTGGCCGGGAGCA
TGTTGGGCCTCGCGAGGCTGTTCTTGCTGCTCCGGTTTCACCCCCGCCTG
TCGCTGGTCACGGATGTTCTTGCTTCGTCCATGGTTCACCTGGTGCATTT
CTTCATCATGTTTTTCATGGTGGTGGCCGTTTACAGCAACGTGGGCTGGA
TAATCTTCGGGGCTTCAAGCGACCTGTTCGCCACATGGACGGCTGCCTTC
GTCACCATGACCCGCACCGCGTTCGGAGAGTTCGATAACATCTACCCTGA
AATGGTTGACATCAACCCTGATGCCGCCTTCCTCATTATCGCGACTTACC
AGCAACGTGGGCTGGATAATCTTCGGGGCTTCAAGCGACCTGTTCGCCAC
ATGGACGGCTGCCTTCGTCACCATGACCCGCACCGCGTTCGGAGAGTTCG
ATAACATCTACCCTGAAATGGTTGACATCAACCCTGATGCCGCCTTCCTC
ATTATCGCGACTTACCAG
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