mRNA_H-paniculata_contig16448.3679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16448.3679.1
Unique NamemRNA_H-paniculata_contig16448.3679.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.870e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 2 
Query:    2 RLFMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            R FM P+YLKSSEG+RLL   FGLHPSLV +IH V+K QMPGAK++VLA+YGE+YF+VWRGAE
Sbjct:  161 RTFMSPVYLKSSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAE 223
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 9.680e-22
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:    2 RLFMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            R FM P+YLK SEG+RLL   FGLHPSLV +IH V+K QMPGAK++VLA+YGE+YF+VWRG E
Sbjct:  288 RTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGTE 350
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.640e-19
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:    8 FMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            F+ P YLKS++GRRLL +LFGLHPSLV+DIHE +K Q+P AK+ ++ +YG++YF+ WR AE
Sbjct:  242 FLKPTYLKSADGRRLLTFLFGLHPSLVVDIHETVKSQLPYAKKKLVQAYGDVYFRAWRAAE 302
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: A0A835YRM8_9STRA (Condensin II non structural maintenance of chromosomes subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.760e-15
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:    2 RLFMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            R F+ P +L+   GRR L  +FGLHP+    IH V+  Q+P A+R+VLA+YGE+YF+ WRGA+
Sbjct:  241 RAFLAPAFLRGDAGRRFLASVFGLHPAFAARIHAVVSAQLPRARRAVLAAYGEVYFRAWRGAD 303
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: L8GEA4_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA)

HSP 1 Score: 74.3 bits (181), Expect = 5.040e-14
Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:    2 RLFMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            R F+ P++L++++G++ LVYLFGLHP  +  IH+ IK Q+P   +S+L +YGE+YFK W+ A+
Sbjct:  275 RCFIHPMFLRAADGKKFLVYLFGLHPPYIDAIHDTIKGQLPACPKSLLEAYGEVYFKAWKVAQ 337
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: R1DA44_EMIHU (Putative condensin (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA44_EMIHU)

HSP 1 Score: 73.6 bits (179), Expect = 6.810e-14
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:   17 PLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGA 187
            PL L+ +EGR+LLVYLFGLHP  + ++H  IK Q+P  ++S+   YGEIYF+ WR A
Sbjct:  203 PLVLRCAEGRKLLVYLFGLHPPFIAELHRAIKAQIPVCRKSLRDLYGEIYFRAWRAA 259
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: R1EH25_EMIHU (Putative condensin n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EH25_EMIHU)

HSP 1 Score: 73.6 bits (179), Expect = 9.270e-14
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:   17 PLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGA 187
            PL L+ +EGR+LLVYLFGLHP  + ++H  IK Q+P  ++S+   YGEIYF+ WR A
Sbjct:  203 PLVLRCAEGRKLLVYLFGLHPPFIAELHRAIKAQIPVCRKSLRDLYGEIYFRAWRAA 259
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: A0A8B7XLR4_ACAPL (condensin-2 complex subunit G2-like isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XLR4_ACAPL)

HSP 1 Score: 60.8 bits (146), Expect = 2.820e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:   23 YLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGA 187
            YLK  +GRR L +L  + P+ +  +H+ IK Q+P   RS++ SYGEIYFK WR A
Sbjct:  235 YLKQDKGRRFLSFLLTMSPTFLERLHKTIKTQLPVCPRSLIDSYGEIYFKAWRVA 289
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: A0A834WMP4_9FABA (Condensin-2 complex subunit G2 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WMP4_9FABA)

HSP 1 Score: 60.8 bits (146), Expect = 2.820e-9
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   17 PLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGAE 190
            PLYLK+ +GRR L+++FGL   L  +I  +I+ Q+P  ++S+L +YG+I F+ W+  +
Sbjct:  244 PLYLKTEDGRRFLIFIFGLSNQLAKEILSMIRSQIPFGRKSMLEAYGDILFRAWKAMD 301
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BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Match: A0A151Z3S1_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z3S1_9MYCE)

HSP 1 Score: 60.1 bits (144), Expect = 5.270e-9
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:    2 RLFMLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGEIYFKVWRGA 187
            R F+ P+++KS EGR+ L++L  +HP L  +IH  +K Q+   K+S    Y EIYFK W+ A
Sbjct:  230 RSFIQPIFIKSKEGRKFLIFLMTVHPLLTDEIHSTVKGQLFTCKKSDRDHYAEIYFKSWKAA 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16448.3679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JG90_9PHAE5.870e-2373.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF93_ECTSI9.680e-2269.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TM42_9STRA2.640e-1960.66Condensin-2 complex subunit g2 n=2 Tax=Monodopsida... [more]
A0A835YRM8_9STRA7.760e-1550.79Condensin II non structural maintenance of chromos... [more]
L8GEA4_ACACA5.040e-1447.62HEAT repeat domain containing protein n=1 Tax=Acan... [more]
R1DA44_EMIHU6.810e-1454.39Putative condensin (Fragment) n=1 Tax=Emiliania hu... [more]
R1EH25_EMIHU9.270e-1454.39Putative condensin n=1 Tax=Emiliania huxleyi TaxID... [more]
A0A8B7XLR4_ACAPL2.820e-949.09condensin-2 complex subunit G2-like isoform X1 n=3... [more]
A0A834WMP4_9FABA2.820e-941.38Condensin-2 complex subunit G2 n=1 Tax=Senna tora ... [more]
A0A151Z3S1_9MYCE5.270e-943.55Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16448contigH-paniculata_contig16448:4245..5511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
KEGG koko:K11492
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size191
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16448.3679.1prot_H-paniculata_contig16448.3679.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16448 4245..5501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.3096128-CDS-H-paniculata_contig16448:4244..42741622929312.3096128-CDS-H-paniculata_contig16448:4244..4274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16448 4245..4274 -
1691480810.672048-CDS-H-paniculata_contig16448:4244..42741691480810.672048-CDS-H-paniculata_contig16448:4244..4274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16448 4245..4274 -
1622929312.329432-CDS-H-paniculata_contig16448:5351..55011622929312.329432-CDS-H-paniculata_contig16448:5351..5501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16448 5352..5501 -
1691480810.6924145-CDS-H-paniculata_contig16448:5351..55011691480810.6924145-CDS-H-paniculata_contig16448:5351..5501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16448 5352..5501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.3455546-UTR-H-paniculata_contig16448:5501..55111622929312.3455546-UTR-H-paniculata_contig16448:5501..5511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16448 5502..5511 -
1691480810.704054-UTR-H-paniculata_contig16448:5501..55111691480810.704054-UTR-H-paniculata_contig16448:5501..5511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16448 5502..5511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16448.3679.1

>prot_H-paniculata_contig16448.3679.1 ID=prot_H-paniculata_contig16448.3679.1|Name=mRNA_H-paniculata_contig16448.3679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MLPLYLKSSEGRRLLVYLFGLHPSLVLDIHEVIKQQMPGAKRSVLASYGE
IYFKVWRGAE
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mRNA from alignment at H-paniculata_contig16448:4245..5511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16448.3679.1 ID=mRNA_H-paniculata_contig16448.3679.1|Name=mRNA_H-paniculata_contig16448.3679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1267bp|location=Sequence derived from alignment at H-paniculata_contig16448:4245..5511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTGTTCATGCTACCTTTGTACCTTAAGTCATCAGAGGGCAGGCGTC
TGTTGGTGTACCTATTCGGCCTTCACCCGTCGCTCGTGTTGGATATCCAC
GAGGTCATTAAGCAACAGATGCCGGGGGCCAAGCGGTCTGTGCTCGCGTC
CTACGGAGAGGTTAGTCAAGTCCGTCTGTTCCTCTCTCTCTCTTTCTTTC
TGTGTGTCTCTCTTTCCGTCTCCCTTTTTTCGTGTTTTCTTCACTGGTTG
AACTATTTCCAGTATCTATTCTCTCTTTTCGCTTATTTTGTCTCTTTTTG
ACTTGTTTTCTTTCAGTACTCCCTCATTGCCAATCGGATTGATCTGACCC
GCGGTTGCCGTATTAAAAACGGTGTGAATCGAACGATTTTCCCTGCACCA
TAAAAACACGCCAAGGGTGGGGTGAGTGGGTGAAAGAAACACATATCGTT
GGGACAAAGTTGGGGAGGAAAGAAATACCGTACCTTCTTTCCTTGCTTCG
CTGATACAGGAATGAAGGAGTTTATATGTACATCTGTGTTCATTTCTTGT
CTGCCTCTCGTTACGGAAGAAATTACCTACGTGGGATCGTCATTGATGCC
GAAGTACACCCATCACAGGCATACCCTTGTCGCAAGACAAACCCATGCAC
AGTAGCGCTTGGTGAAAATTGGAGGCCTGGGGAGGGGTTACGTACACAGA
GATGTGTTGTACTCTGAAATTGATTACATGCATCTGATAATGAACACATC
AAAAGTATATATACACACCACTCTGTAGTATTTTCTAGTATTTAATTTCC
TCAATGCTGAGGAGCTAGTTATAGCCCACACTTTGGGCTAATCATACCTG
GTACACAAGGTCATACTCCATGCGTGACGTGTTTTTGGTGTTCGGTTTTG
GTGCTATTTATTACAGGCGTGATACTGCTTGGGACTGGTGACCCAATGTG
TACAGTATACTCAAAGTAGCACACCAACATATGAGGCACTATATCTAGTA
CCCACCACCTGAATGAGACTAGTATATGACCCTACACCAAAATGGAAGGA
AGCAGTGGACAAAACTGGAGCTATATATGTCTGGGGTAAGGATGTACGGT
TCGCAGGTATTCAAAAAGTGGCGATCAATCCACCACGTGCTCCGGGCTGC
AGGTGAAAACGTTTTGACTGACTGGGATAAGCACCCCCCCCCCCTCCCCC
CCTCGACCCCCGGAACCCCGTCATCAAACACAAGCAGATTTATTTCAAGG
TTTGGCGCGGCGCTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16448:4245..5511-

>mRNA_H-paniculata_contig16448.3679.1 ID=mRNA_H-paniculata_contig16448.3679.1|Name=mRNA_H-paniculata_contig16448.3679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig16448:4245..5511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACCTTTGTACCTTAAGTCATCAGAGGGCAGGCGTCTGTTGGTGTA
CCTATTCGGCCTTCACCCGTCGCTCGTGTTGGATATCCACGAGGTCATTA
AGCAACAGATGCCGGGGGCCAAGCGGTCTGTGCTCGCGTCCTACGGAGAG
ATGCTACCTTTGTACCTTAAGTCATCAGAGGGCAGGCGTCTGTTGGTGTA
CCTATTCGGCCTTCACCCGTCGCTCGTGTTGGATATCCACGAGGTCATTA
AGCAACAGATGCCGGGGGCCAAGCGGTCTGTGCTCGCGTCCTACGGAGAG
ATTTATTTCAAGGTTTGGCGCGGCGCTGAGATTTATTTCAAGGTTTGGCG
CGGCGCTGAG
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