mRNA_H-paniculata_contig16445.3677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16445.3677.1
Unique NamemRNA_H-paniculata_contig16445.3677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16445.3677.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 8.460e-5
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  571 RSYAAAIEVCARCGKWRKALEILDDMRGAGVRPDCRAYSSAMWAFDQGGQWDKTLEVWREIQKTHQVTPTV 783
            R   AA+   A  GKWR+AL ILD+M+  GV     +Y++A+    + GQW+K LE+ REI +   V+P V
Sbjct:  111 RKLQAALREAATTGKWREALGILDEMKEGGV-VCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16445.3677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG06_ECTSI8.460e-542.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16445contigH-paniculata_contig16445:1883..5467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1694
Cds size1269
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16445.3677.1prot_H-paniculata_contig16445.3677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16445 3882..5150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.019462-UTR-H-paniculata_contig16445:1882..19181622929312.019462-UTR-H-paniculata_contig16445:1882..1918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 1883..1918 +
1691480810.612559-UTR-H-paniculata_contig16445:1882..19181691480810.612559-UTR-H-paniculata_contig16445:1882..1918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 1883..1918 +
1622929312.0400572-UTR-H-paniculata_contig16445:3809..38811622929312.0400572-UTR-H-paniculata_contig16445:3809..3881Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 3810..3881 +
1691480810.628454-UTR-H-paniculata_contig16445:3809..38811691480810.628454-UTR-H-paniculata_contig16445:3809..3881Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 3810..3881 +
1622929312.1085844-UTR-H-paniculata_contig16445:5150..54671622929312.1085844-UTR-H-paniculata_contig16445:5150..5467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 5151..5467 +
1691480810.6497986-UTR-H-paniculata_contig16445:5150..54671691480810.6497986-UTR-H-paniculata_contig16445:5150..5467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16445 5151..5467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.0588014-CDS-H-paniculata_contig16445:3881..51501622929312.0588014-CDS-H-paniculata_contig16445:3881..5150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16445 3882..5150 +
1691480810.6393669-CDS-H-paniculata_contig16445:3881..51501691480810.6393669-CDS-H-paniculata_contig16445:3881..5150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16445 3882..5150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16445.3677.1

>prot_H-paniculata_contig16445.3677.1 ID=prot_H-paniculata_contig16445.3677.1|Name=mRNA_H-paniculata_contig16445.3677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
MAMTVRTRVMLSGGADFRKPCQFTAIGVTLGVRQRFVESVGPDYFGYLTA
GSLYNAQYLLRQTGSVTISPTGLRRYRGPGLSYSLQHFTSKAWAHSRRGN
KLSARNKEKLGFTREPLPFSVQQLENAGRETRWDVVEKAIDKSITLACDG
VNPLRSYAAAIEVCARCGKWRKALEILDDMRGAGVRPDCRAYSSAMWAFD
QGGQWDKTLEVWREIQKTHQVTPTVAMYSYVIHAYANSWQSEKAISLLQD
MQMKRLIPDVQGFTAAIKAYGRSGRWENAMYLFMEMKALGVTPTAFTYRT
VIVAIGKGGQWRKALSLLREMPGVGLAADVKSYNTVMYMCCRNQQWEKGL
ELFAEMQVEGVKPNAGIYNMAIWAFGHINNWSKVLDTLKEMRAAGVPPGL
SSYNYAILAASVAAGYRKEPER*
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mRNA from alignment at H-paniculata_contig16445:1883..5467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16445.3677.1 ID=mRNA_H-paniculata_contig16445.3677.1|Name=mRNA_H-paniculata_contig16445.3677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3585bp|location=Sequence derived from alignment at H-paniculata_contig16445:1883..5467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGCTCCGATGTTCAAGGGCTTCAAAGTAATGAGGTGAGGTGAGTTCG
ATCTAGCTTCTTCCCCCTCTTGCTGCTATTTTTTCCTTTTTTTGTAAATC
GTCTCTCTTATTCGGGTTCTGTTGTATACCATAACTGCTTCAGCACGAGT
GCGTGTGATGTATTCAGTAGGTGGGTATTCCTACTACCTTTTCAGATACA
GCATTAGGACAGTTGGCACACCATTCTTTGTTCGCTCTATAGTAGTGTGG
CTGCACAATAGAATGACTCCTCCCGCAGATTTCTCCTTTTGTAAAACAGA
TACATATATTTGGCATGCGCCGTCCTGGTGCTGCTGGATTACGCTGTATG
ATTAGTACAATTCTGTAAGTCGGCCAGGCTCTCAACTCGTGACTAACTGC
AGAGACGGTCAACCGGCTTCCCCCACACGTCGCCAACACAACCACGAGGA
GGCACAACCACGACGAGATACCAAAGTGGGCGCGTGAGCGCCCACGTCGA
AACACATGGTGACAGCTCATGTGCATGTTCCTCCCTGCTGAAAGGATTGC
CTACCTTGCCGTTTCAGTCCGACCTCCTCTACTGTTCCAGTGGTGCTTGC
CGTCGCAAAACGCAAACCGCCACGAGTCGGGACTTCTTTGTAACTTTTCA
GATCCTCCGTTTGTACTACATAAACGATATACTTCCGGGTGTTTTCGGTA
GTGGTATTTCACAAATGAATAAACAGTACGGTCAATGACTTCGTCCGTGT
CGTATTGTGAAAAGGTACACACGTGACCAGAGGGTACCTTGTGAGTATCT
TGTTGCGAATATGACAACGTCCCCACGTTGCGGGGGGTTGACAACGTGCA
TAAACGCATTATGACGATGTATTACATTATAAACCTGACCACAGCGTGGA
CGTTGCAATATCCACAACAAGGTACCCCTCTAGCCACGTGTGTACAGTAG
GGGCCCGATTATAAGAAGCTCTTATTTCGGGTGAGGCTCAAAACCTTATT
TTGACGAAAATCACGAGCAGTGGTGTTTCTCACTTTTATATAGGAATTAG
TATAATGCCACAATTTTAGCACCATTTCTTAGACCGAATTCCTTATTGGT
CGGCAAAAAATGAGCCTCAGTTTCTTACAGCTTACTGTATTCGGCATATC
CGTAGCATGGTATGGTAAATAGATTTCTCGGTTTTCCCGCTGTAAACGTT
TTTTCCCATCGCGGTACGTTACGGTACGGTATTTAGTCTTCTCAGTATCA
TGCAGTATAATATCTGGTAGTTGGCACAGTATTTCGATCCCCAAGCCTTG
CCCAAGTGCAAGATACAAAATATAAACGTAAAATCCACATGCGTATAGTA
AAAGACATGTACGAGGAGTTCCAGCGAATTACAGGCTGATCCAGGGGAGA
TAGCAGAATAATTGTGATTACTCGTCCGAGTCGGGTTTATCTAATATTTT
ACAGAACTCTGAAACTTCGCACACATCCGACGGATGATGACCCGTACACT
TTTTATCATACGCATCGGCGGCAGGCAATCATGCTCTGATGGTGCGTAGG
CTATGCATCACCGTGGATACAGATGTACGCATCATAGAGCGTGTACGGAT
CTGTTGAGACAAAATGTGTGCTGATGATGCCTGGCGTAAGCATCAGCAAT
GGACGAAACATGTACGCATCATAGGGCTTGTATGGATCAGCTGAGACAAA
ATGTTTCCATTTTATGAGGGAATAATGTCGTATACTCTGACCTTGATATT
GAAAAGTGATAAATCACGTTTTTCAGAGCGTCCTGTTGTCGGATCCAAAA
ACGTTGGGGAGGACACCCCTGGTTATACCGCGTAGGATGCTTACAGAAGT
CATCACTGATGTAAAAATCTGAGCTGCCTTGCTCGTATGCACTACATGCT
CTTTTTATCCTGTTTTTGATATTCTAGGTGTCTTCAACTTCTAGTTTAGC
CGTGTTCATTATCGCGGACGACGTTCCCGCACAACAGGCATTGCGAGGCA
TGGCAATGACCGTTCGTACTCGTGTGATGCTAAGCGGTGGAGCGGACTTC
AGAAAGCCTTGTCAATTTACTGCGATAGGAGTTACTCTGGGTGTCCGGCA
GAGATTTGTGGAATCAGTCGGTCCAGATTATTTTGGGTATCTCACCGCTG
GCAGTCTATATAACGCTCAGTACCTGCTTCGCCAGACGGGGAGCGTGACC
ATCTCACCTACAGGTTTAAGGCGGTACCGTGGTCCCGGCCTCTCATATAG
TCTGCAGCACTTCACTTCAAAGGCATGGGCTCACAGTCGCAGAGGAAACA
AGCTGAGCGCACGAAACAAAGAAAAGTTAGGATTTACACGAGAACCGCTG
CCGTTCTCTGTGCAGCAACTGGAAAACGCCGGACGCGAGACGAGGTGGGA
CGTCGTGGAGAAAGCAATAGACAAATCGATTACCTTGGCTTGTGACGGCG
TGAATCCTTTGCGGAGTTACGCCGCCGCGATAGAAGTTTGCGCAAGGTGC
GGAAAATGGCGAAAGGCACTTGAGATACTCGATGATATGAGGGGGGCAGG
GGTACGTCCTGATTGTCGTGCGTATAGTTCGGCCATGTGGGCATTTGACC
AAGGCGGGCAGTGGGACAAGACTCTTGAAGTTTGGAGGGAAATTCAAAAG
ACACATCAAGTCACCCCCACCGTCGCGATGTATAGTTACGTTATCCACGC
CTACGCCAACAGCTGGCAATCGGAGAAGGCAATTTCTCTTTTGCAGGACA
TGCAAATGAAGCGTCTCATTCCTGATGTCCAGGGATTCACAGCGGCGATC
AAGGCGTATGGGCGCTCCGGACGGTGGGAAAATGCGATGTATCTTTTCAT
GGAGATGAAGGCATTAGGTGTCACTCCGACAGCATTCACCTACAGGACGG
TTATCGTGGCTATTGGCAAGGGGGGGCAGTGGAGGAAGGCCCTGAGTCTT
TTGAGAGAGATGCCAGGAGTAGGCTTAGCAGCGGATGTCAAGAGCTACAA
TACCGTTATGTACATGTGCTGCAGGAATCAGCAGTGGGAAAAGGGACTGG
AGTTGTTTGCAGAGATGCAAGTGGAGGGCGTGAAGCCGAATGCTGGCATC
TACAACATGGCTATTTGGGCGTTTGGGCACATCAACAACTGGAGTAAGGT
GTTGGATACTCTCAAGGAGATGCGTGCCGCTGGGGTCCCACCCGGACTCT
CGAGCTACAACTACGCCATACTTGCTGCAAGTGTTGCCGCAGGTTATAGA
AAAGAGCCTGAGCGCTGAAGGCACCAAATATTATCAGCGTTGAACTACTT
TCCGGCCGTTTCTCCCCCCGACACTTGTTCTAACCTCTCCCAACAGAAGC
TCCCTTCTGTGCTTGCCTTGCTGCTGCTCTGATCCGGAGCACAAAGGGCG
TTACTAACTACCATGATCGTGGGGTACATGTTCCAACCACGGTTGGGTTG
TATATATTAGCCCTACCGTAATTTGTTTCATGTTGGCGGCGCTTTGCTGA
GCAGCATTCAATTCCTATCTTCAGATATCAATTGCTGCTGTACTTCGTGA
AAATGCTTGAATCTGTTTGAATTTGCGAACGGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16445:1883..5467+

>mRNA_H-paniculata_contig16445.3677.1 ID=mRNA_H-paniculata_contig16445.3677.1|Name=mRNA_H-paniculata_contig16445.3677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig16445:1883..5467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAATGACCGTTCGTACTCGTGTGATGCTAAGCGGTGGAGCGGACTT
CAGAAAGCCTTGTCAATTTACTGCGATAGGAGTTACTCTGGGTGTCCGGC
AGAGATTTGTGGAATCAGTCGGTCCAGATTATTTTGGGTATCTCACCGCT
GGCAGTCTATATAACGCTCAGTACCTGCTTCGCCAGACGGGGAGCGTGAC
CATCTCACCTACAGGTTTAAGGCGGTACCGTGGTCCCGGCCTCTCATATA
GTCTGCAGCACTTCACTTCAAAGGCATGGGCTCACAGTCGCAGAGGAAAC
AAGCTGAGCGCACGAAACAAAGAAAAGTTAGGATTTACACGAGAACCGCT
GCCGTTCTCTGTGCAGCAACTGGAAAACGCCGGACGCGAGACGAGGTGGG
ACGTCGTGGAGAAAGCAATAGACAAATCGATTACCTTGGCTTGTGACGGC
GTGAATCCTTTGCGGAGTTACGCCGCCGCGATAGAAGTTTGCGCAAGGTG
CGGAAAATGGCGAAAGGCACTTGAGATACTCGATGATATGAGGGGGGCAG
GGGTACGTCCTGATTGTCGTGCGTATAGTTCGGCCATGTGGGCATTTGAC
CAAGGCGGGCAGTGGGACAAGACTCTTGAAGTTTGGAGGGAAATTCAAAA
GACACATCAAGTCACCCCCACCGTCGCGATGTATAGTTACGTTATCCACG
CCTACGCCAACAGCTGGCAATCGGAGAAGGCAATTTCTCTTTTGCAGGAC
ATGCAAATGAAGCGTCTCATTCCTGATGTCCAGGGATTCACAGCGGCGAT
CAAGGCGTATGGGCGCTCCGGACGGTGGGAAAATGCGATGTATCTTTTCA
TGGAGATGAAGGCATTAGGTGTCACTCCGACAGCATTCACCTACAGGACG
GTTATCGTGGCTATTGGCAAGGGGGGGCAGTGGAGGAAGGCCCTGAGTCT
TTTGAGAGAGATGCCAGGAGTAGGCTTAGCAGCGGATGTCAAGAGCTACA
ATACCGTTATGTACATGTGCTGCAGGAATCAGCAGTGGGAAAAGGGACTG
GAGTTGTTTGCAGAGATGCAAGTGGAGGGCGTGAAGCCGAATGCTGGCAT
CTACAACATGGCTATTTGGGCGTTTGGGCACATCAACAACTGGAGTAAGG
TGTTGGATACTCTCAAGGAGATGCGTGCCGCTGGGGTCCCACCCGGACTC
TCGAGCTACAACTACGCCATACTTGCTGCAAGTGTTGCCGCAGGTTATAG
AAAAGAGCCTGAGCGCTGAATGGCAATGACCGTTCGTACTCGTGTGATGC
TAAGCGGTGGAGCGGACTTCAGAAAGCCTTGTCAATTTACTGCGATAGGA
GTTACTCTGGGTGTCCGGCAGAGATTTGTGGAATCAGTCGGTCCAGATTA
TTTTGGGTATCTCACCGCTGGCAGTCTATATAACGCTCAGTACCTGCTTC
GCCAGACGGGGAGCGTGACCATCTCACCTACAGGTTTAAGGCGGTACCGT
GGTCCCGGCCTCTCATATAGTCTGCAGCACTTCACTTCAAAGGCATGGGC
TCACAGTCGCAGAGGAAACAAGCTGAGCGCACGAAACAAAGAAAAGTTAG
GATTTACACGAGAACCGCTGCCGTTCTCTGTGCAGCAACTGGAAAACGCC
GGACGCGAGACGAGGTGGGACGTCGTGGAGAAAGCAATAGACAAATCGAT
TACCTTGGCTTGTGACGGCGTGAATCCTTTGCGGAGTTACGCCGCCGCGA
TAGAAGTTTGCGCAAGGTGCGGAAAATGGCGAAAGGCACTTGAGATACTC
GATGATATGAGGGGGGCAGGGGTACGTCCTGATTGTCGTGCGTATAGTTC
GGCCATGTGGGCATTTGACCAAGGCGGGCAGTGGGACAAGACTCTTGAAG
TTTGGAGGGAAATTCAAAAGACACATCAAGTCACCCCCACCGTCGCGATG
TATAGTTACGTTATCCACGCCTACGCCAACAGCTGGCAATCGGAGAAGGC
AATTTCTCTTTTGCAGGACATGCAAATGAAGCGTCTCATTCCTGATGTCC
AGGGATTCACAGCGGCGATCAAGGCGTATGGGCGCTCCGGACGGTGGGAA
AATGCGATGTATCTTTTCATGGAGATGAAGGCATTAGGTGTCACTCCGAC
AGCATTCACCTACAGGACGGTTATCGTGGCTATTGGCAAGGGGGGGCAGT
GGAGGAAGGCCCTGAGTCTTTTGAGAGAGATGCCAGGAGTAGGCTTAGCA
GCGGATGTCAAGAGCTACAATACCGTTATGTACATGTGCTGCAGGAATCA
GCAGTGGGAAAAGGGACTGGAGTTGTTTGCAGAGATGCAAGTGGAGGGCG
TGAAGCCGAATGCTGGCATCTACAACATGGCTATTTGGGCGTTTGGGCAC
ATCAACAACTGGAGTAAGGTGTTGGATACTCTCAAGGAGATGCGTGCCGC
TGGGGTCCCACCCGGACTCTCGAGCTACAACTACGCCATACTTGCTGCAA
GTGTTGCCGCAGGTTATAGAAAAGAGCCTGAGCGCTGA
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