prot_H-paniculata_contig16445.3677.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16445.3677.1
Unique Nameprot_H-paniculata_contig16445.3677.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length423
Homology
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BLAST of mRNA_H-paniculata_contig16445.3677.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.970e-5
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 0 
Query:  155 RSYAAAIEVCARCGKWRKALEILDDMRGAGVRPDCRAYSSAMWAFDQGGQWDKTLEVWREIQKTHQVTPTV 225
            R   AA+   A  GKWR+AL ILD+M+  GV     +Y++A+    + GQW+K LE+ REI +   V+P V
Sbjct:  111 RKLQAALREAATTGKWREALGILDEMKEGGV-VCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16445.3677.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG06_ECTSI4.970e-542.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 329..365
e-value: 2.0E-8
score: 34.3
coord: 258..302
e-value: 3.6E-10
score: 39.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 227..260
e-value: 0.0024
score: 15.9
coord: 296..328
e-value: 3.0E-4
score: 18.8
coord: 263..294
e-value: 1.9E-6
score: 25.7
coord: 332..365
e-value: 1.4E-10
score: 38.7
coord: 156..189
e-value: 4.4E-7
score: 27.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 367..396
e-value: 0.14
score: 12.5
coord: 156..185
e-value: 2.4E-4
score: 21.1
coord: 227..254
e-value: 0.0017
score: 18.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..328
score: 9.602
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 11.652
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..258
score: 8.879
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 11.038
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 329..363
score: 13.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 9.339
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 7.235
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 301..418
e-value: 9.3E-28
score: 98.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 92..287
e-value: 5.2E-32
score: 113.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 288..408
coord: 154..321

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16445contigH-paniculata_contig16445:3882..5150 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16445.3677.1mRNA_H-paniculata_contig16445.3677.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16445 1883..5467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16445.3677.1 ID=prot_H-paniculata_contig16445.3677.1|Name=mRNA_H-paniculata_contig16445.3677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
MAMTVRTRVMLSGGADFRKPCQFTAIGVTLGVRQRFVESVGPDYFGYLTA
GSLYNAQYLLRQTGSVTISPTGLRRYRGPGLSYSLQHFTSKAWAHSRRGN
KLSARNKEKLGFTREPLPFSVQQLENAGRETRWDVVEKAIDKSITLACDG
VNPLRSYAAAIEVCARCGKWRKALEILDDMRGAGVRPDCRAYSSAMWAFD
QGGQWDKTLEVWREIQKTHQVTPTVAMYSYVIHAYANSWQSEKAISLLQD
MQMKRLIPDVQGFTAAIKAYGRSGRWENAMYLFMEMKALGVTPTAFTYRT
VIVAIGKGGQWRKALSLLREMPGVGLAADVKSYNTVMYMCCRNQQWEKGL
ELFAEMQVEGVKPNAGIYNMAIWAFGHINNWSKVLDTLKEMRAAGVPPGL
SSYNYAILAASVAAGYRKEPER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf