mRNA_H-paniculata_contig164.3656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig164.3656.1
Unique NamemRNA_H-paniculata_contig164.3656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.700e-55
Identity = 120/211 (56.87%), Postives = 139/211 (65.88%), Query Frame = 2 
Query:    2 MEIDLDLPDEAREQLEAKGARERAQTLRAHM----------------DPVPTPAVSAGGANDASVQHSLRPIAPRVVTSLSAMDDSNSESDSD----DEESAAA---KNTFDPEKHRQAKLEELPEEPARDEEGVFTCQLRSPHGKFARRFRYGDDLGVLLDFAEAHGGVPGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            MEI+LDLP++AREQL+ KGA++RA+TLRAHM                 P P+    A G   +SV    R  +    T LS MDDS S+ DSD    DE S      K  FD EKHR AK ++LPEEP RDEEGVFTCQLR+  GKF RRFR+ D LGVLLDF EA GGVPG YR+VMPFPR+V TRD  S G TL +AGLTSKQE+VILE
Sbjct:  312 MEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTS---TTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILE 519
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A5N6R5R7_9ROSI (UBX domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6R5R7_9ROSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.860e-12
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILET 568
            AK   LP+EPA D+E   T  +R P G +  RRF   D L  L DF +    V PG YR+V P+PR+ F+ DG S GLTL + GLTSKQEA+ LE+
Sbjct:  505 AKEASLPQEPASDDENAVTLLVRMPDGSRHGRRFLKSDKLQHLFDFLDIGRRVKPGSYRLVRPYPRRAFS-DGES-GLTLNELGLTSKQEALFLES 598
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A540NNL0_MALBA (UBX domain-containing protein n=9 Tax=Maleae TaxID=721813 RepID=A0A540NNL0_MALBA)

HSP 1 Score: 76.6 bits (187), Expect = 6.960e-12
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILET 568
            AK   LP+EPA D+E   T  +R P G +  RRF   D L  L DF +    V PG YRVV PFPR+ F+ DG S  LTL + GLTSKQEA+ LE+
Sbjct:  503 AKEATLPQEPASDDENAVTLLVRMPDGSRHGRRFLRTDKLQSLFDFIDIGRRVKPGSYRVVRPFPRRAFS-DGESA-LTLNELGLTSKQEALFLES 596
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A498JKU0_MALDO (UBX domain-containing protein n=8 Tax=Maleae TaxID=721813 RepID=A0A498JKU0_MALDO)

HSP 1 Score: 75.1 bits (183), Expect = 2.260e-11
Identity = 48/96 (50.00%), Postives = 59/96 (61.46%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILET 568
            AK   LP+EPA D+E   T  +R P G +  RRF   D L  L DF +    V PG YRVV PFPR+ F+ +G S  LTL + GLTSKQEA+ LE+
Sbjct:  498 AKEATLPQEPASDDENAVTLLVRMPDGSRHGRRFLRTDKLQSLFDFIDIGRRVKPGSYRVVRPFPRRAFS-EGESA-LTLNELGLTSKQEALFLES 591
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A8B8PUT1_9MYRT (plant UBX domain-containing protein 8-like isoform X1 n=2 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8PUT1_9MYRT)

HSP 1 Score: 75.1 bits (183), Expect = 2.260e-11
Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            AK   LP+EP  D+E   T  +R P G +  RRF   D L  L DF +    V PG YR+V P+PR+ FT DG S  LTLK+ GLTSKQEA+ LE
Sbjct:  499 AKEASLPQEPMPDDENAITLLVRMPDGSRRGRRFLKSDKLQCLFDFIDIGRVVKPGTYRLVRPYPRRAFT-DGESM-LTLKELGLTSKQEALFLE 591
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: UPI0002C2E3D8 (uncharacterized protein LOC101293230 isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2E3D8)

HSP 1 Score: 74.3 bits (181), Expect = 3.540e-11
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            AK   LP EPA D+E   T  +R P+G + + RFR  D L +L DF +    V PG YRVV  +PR  FT    ++ LTL++ GLT+KQEA+ LE
Sbjct:  386 AKTASLPSEPAADDENAVTLLVRMPNGSRLSHRFRKSDKLQLLFDFIDVSSVVEPGTYRVVRSYPRHAFTTK--NSLLTLRELGLTNKQEALFLE 478
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A2I4FAY1_JUGRE (plant UBX domain-containing protein 8-like n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FAY1_JUGRE)

HSP 1 Score: 74.3 bits (181), Expect = 4.110e-11
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILET 568
            AK   LPEEP  ++E   T  +R P G +  RRF   D L  L DF +   GV PG YR+V P+PR+ F+ +   + LTL + GLTSKQEA+ LE+
Sbjct:  504 AKEASLPEEPGSEDENAVTLLVRMPDGIRRGRRFLKSDKLQFLFDFIDIGKGVKPGTYRLVRPYPRRAFSDE--ESALTLNELGLTSKQEALYLES 597
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A2P6SGK6_ROSCH (Putative UBX domain-containing protein 2/7 n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SGK6_ROSCH)

HSP 1 Score: 73.9 bits (180), Expect = 4.730e-11
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 2 
Query:  272 EKHRQAKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            E+   AK   LP EPA D+E   T  +R P+G + +RRFR  D L +L DF +    V PG YRVV  +PR  FT +  ++ LTL++ GLT+KQEA+ LE
Sbjct:  378 ERRLDAKSASLPCEPAPDDENAVTLLVRMPNGSRLSRRFRKSDKLQLLFDFIDVGRVVEPGTYRVVRSYPRHAFTAN--NSLLTLRELGLTNKQEALFLE 475
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: A0A4S4DDY5_CAMSI (UBX domain-containing protein n=4 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4DDY5_CAMSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.530e-11
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAEAHGGV-PGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            AK   LP+EP  D+E   T  +R P G +  RRF   D L  L DF +   GV PG YR+V P+PR+ F+ DG     TLK+ GLTSKQEA+ LE
Sbjct:  510 AKEVSLPQEPTSDDESAVTLLVRMPDGSRRGRRFLKSDKLQSLFDFIDVGRGVKPGTYRLVRPYPRRAFS-DGECAS-TLKELGLTSKQEALFLE 602
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BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Match: B9RC31_RICCO (Ara4-interacting protein, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RC31_RICCO)

HSP 1 Score: 73.6 bits (179), Expect = 7.150e-11
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2 
Query:  287 AKLEELPEEPARDEEGVFTCQLRSPHG-KFARRFRYGDDLGVLLDFAE-AHGGVPGHYRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILE 565
            AK   LP+EP  D+E   T  +R P+G +  RRF   D+L  L DF + A    PG YR+V P+PR+ F+ DG S  LTL++ GLT+KQEA+ LE
Sbjct:  470 AKEASLPQEPPSDDENAITLLVRMPNGTRCGRRFLKTDNLRSLFDFIDIARVANPGSYRLVRPYPRRAFS-DGESE-LTLRELGLTTKQEALFLE 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig164.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI2.700e-5556.87UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5N6R5R7_9ROSI3.860e-1250.00UBX domain-containing protein n=1 Tax=Carpinus fan... [more]
A0A540NNL0_MALBA6.960e-1251.04UBX domain-containing protein n=9 Tax=Maleae TaxID... [more]
A0A498JKU0_MALDO2.260e-1150.00UBX domain-containing protein n=8 Tax=Maleae TaxID... [more]
A0A8B8PUT1_9MYRT2.260e-1150.53plant UBX domain-containing protein 8-like isoform... [more]
UPI0002C2E3D83.540e-1146.32uncharacterized protein LOC101293230 isoform X1 n=... [more]
A0A2I4FAY1_JUGRE4.110e-1145.83plant UBX domain-containing protein 8-like n=7 Tax... [more]
A0A2P6SGK6_ROSCH4.730e-1146.00Putative UBX domain-containing protein 2/7 n=3 Tax... [more]
A0A4S4DDY5_CAMSI5.530e-1148.42UBX domain-containing protein n=4 Tax=Camellia sin... [more]
B9RC31_RICCO7.150e-1147.37Ara4-interacting protein, putative n=2 Tax=Ricinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig164contigH-paniculata_contig164:2342..3271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue3.1e-48
Seed eggNOG ortholog2880.D7FT74
Preferred nameubxn8
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1363@1,KOG1363@2759,KOG1816@2759
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-06_003840.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size930
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig164.3656.1prot_H-paniculata_contig164.3656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig164 2343..2915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929308.428472-UTR-H-paniculata_contig164:2341..23421622929308.428472-UTR-H-paniculata_contig164:2341..2342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig164 2342..2342 +
1691480809.041256-UTR-H-paniculata_contig164:2341..23421691480809.041256-UTR-H-paniculata_contig164:2341..2342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig164 2342..2342 +
1622929308.496766-UTR-H-paniculata_contig164:2915..32711622929308.496766-UTR-H-paniculata_contig164:2915..3271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig164 2916..3271 +
1691480809.062346-UTR-H-paniculata_contig164:2915..32711691480809.062346-UTR-H-paniculata_contig164:2915..3271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig164 2916..3271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929308.4502306-CDS-H-paniculata_contig164:2342..29151622929308.4502306-CDS-H-paniculata_contig164:2342..2915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig164 2343..2915 +
1691480809.0543098-CDS-H-paniculata_contig164:2342..29151691480809.0543098-CDS-H-paniculata_contig164:2342..2915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig164 2343..2915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig164.3656.1

>prot_H-paniculata_contig164.3656.1 ID=prot_H-paniculata_contig164.3656.1|Name=mRNA_H-paniculata_contig164.3656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MEIDLDLPDEAREQLEAKGARERAQTLRAHMDPVPTPAVSAGGANDASVQ
HSLRPIAPRVVTSLSAMDDSNSESDSDDEESAAAKNTFDPEKHRQAKLEE
LPEEPARDEEGVFTCQLRSPHGKFARRFRYGDDLGVLLDFAEAHGGVPGH
YRVVMPFPRKVFTRDGPSTGLTLKQAGLTSKQEAVILETF*
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mRNA from alignment at H-paniculata_contig164:2342..3271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig164.3656.1 ID=mRNA_H-paniculata_contig164.3656.1|Name=mRNA_H-paniculata_contig164.3656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at H-paniculata_contig164:2342..3271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGAAATAGATCTTGACTTGCCGGACGAGGCAAGAGAGCAACTTGAGG
CGAAGGGAGCTCGAGAGCGGGCACAGACATTACGCGCGCATATGGACCCT
GTTCCAACGCCTGCTGTTTCCGCCGGGGGTGCGAACGACGCATCTGTACA
GCACAGCTTGAGGCCGATAGCACCGCGTGTCGTTACCAGCCTATCTGCCA
TGGATGACTCGAATTCGGAATCAGATTCCGATGACGAGGAATCTGCCGCT
GCAAAGAATACATTTGACCCCGAGAAACACCGCCAAGCCAAGCTTGAGGA
GCTCCCGGAAGAGCCCGCCCGAGATGAAGAGGGGGTCTTTACTTGCCAAT
TGCGGAGTCCACACGGCAAGTTTGCCCGACGTTTCCGATATGGGGATGAT
TTAGGAGTTTTGTTAGATTTTGCCGAGGCGCATGGAGGTGTTCCTGGTCA
CTACAGAGTGGTGATGCCTTTTCCTCGAAAGGTGTTCACAAGAGACGGCC
CATCGACGGGACTGACGCTGAAGCAGGCAGGACTAACATCGAAACAGGAA
GCCGTTATCTTGGAAACATTTTGAGTAGGTTGTCAAATCACTGGCAACGG
TCGTGTAGTAGATAAATATTTTATGGCTTATGTGGTTGTTTGGTTTTCGT
TGGTTCTTGGGGCGGGTGCTATCTCTATCCCGTTTTGTGTTGTGATTATT
TGCAAAGTATCAAGGTGAAGAGGATCTTACATCAGCTATAGTGACTAATG
AAGCGATACGCTCATTTCATTTCTAGTGGTTCCTTGTTGGAGCACCGTGC
TTAGTCCACCAACTCTCCTTGTTGAATACTGGAAGCAGTGTCTCTCGAGA
CAGAGCGACCTTTTAGCATTCACCTGTTTCATTGGGTGAGATCGACCCAT
CAGTTAACGATACATGCATGTGTCCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig164:2342..3271+

>mRNA_H-paniculata_contig164.3656.1 ID=mRNA_H-paniculata_contig164.3656.1|Name=mRNA_H-paniculata_contig164.3656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig164:2342..3271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATAGATCTTGACTTGCCGGACGAGGCAAGAGAGCAACTTGAGGC
GAAGGGAGCTCGAGAGCGGGCACAGACATTACGCGCGCATATGGACCCTG
TTCCAACGCCTGCTGTTTCCGCCGGGGGTGCGAACGACGCATCTGTACAG
CACAGCTTGAGGCCGATAGCACCGCGTGTCGTTACCAGCCTATCTGCCAT
GGATGACTCGAATTCGGAATCAGATTCCGATGACGAGGAATCTGCCGCTG
CAAAGAATACATTTGACCCCGAGAAACACCGCCAAGCCAAGCTTGAGGAG
CTCCCGGAAGAGCCCGCCCGAGATGAAGAGGGGGTCTTTACTTGCCAATT
GCGGAGTCCACACGGCAAGTTTGCCCGACGTTTCCGATATGGGGATGATT
TAGGAGTTTTGTTAGATTTTGCCGAGGCGCATGGAGGTGTTCCTGGTCAC
TACAGAGTGGTGATGCCTTTTCCTCGAAAGGTGTTCACAAGAGACGGCCC
ATCGACGGGACTGACGCTGAAGCAGGCAGGACTAACATCGAAACAGGAAG
CCGTTATCTTGGAAACATTTTGAATGGAAATAGATCTTGACTTGCCGGAC
GAGGCAAGAGAGCAACTTGAGGCGAAGGGAGCTCGAGAGCGGGCACAGAC
ATTACGCGCGCATATGGACCCTGTTCCAACGCCTGCTGTTTCCGCCGGGG
GTGCGAACGACGCATCTGTACAGCACAGCTTGAGGCCGATAGCACCGCGT
GTCGTTACCAGCCTATCTGCCATGGATGACTCGAATTCGGAATCAGATTC
CGATGACGAGGAATCTGCCGCTGCAAAGAATACATTTGACCCCGAGAAAC
ACCGCCAAGCCAAGCTTGAGGAGCTCCCGGAAGAGCCCGCCCGAGATGAA
GAGGGGGTCTTTACTTGCCAATTGCGGAGTCCACACGGCAAGTTTGCCCG
ACGTTTCCGATATGGGGATGATTTAGGAGTTTTGTTAGATTTTGCCGAGG
CGCATGGAGGTGTTCCTGGTCACTACAGAGTGGTGATGCCTTTTCCTCGA
AAGGTGTTCACAAGAGACGGCCCATCGACGGGACTGACGCTGAAGCAGGC
AGGACTAACATCGAAACAGGAAGCCGTTATCTTGGAAACATTTTGA
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