mRNA_H-paniculata_contig16394.3653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16394.3653.1
Unique NamemRNA_H-paniculata_contig16394.3653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16394.3653.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.730e-22
Identity = 61/142 (42.96%), Postives = 88/142 (61.97%), Query Frame = 2 
Query:  251 LSNSPRIYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLR-EQLQIEDVSGMTLLIIAVRSGSIAVVRALLNE-RGIWMPRR 670
            LS SP   RQ S R+A+ S+ +L  VE+GD + +R  L  + K   ++++ PS    HR RTPLMAAAATG  +LF T+LHA NR       +  ++ LR +QL+  D SGMTLL++A RSGS+ ++ A++   R +  P R
Sbjct:    8 LSVSPTFGRQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPER 149
[Close]
BLAST of mRNA_H-paniculata_contig16394.3653.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.610e-20
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 2 
Query:  251 LSNSPRIYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLRE-QLQIEDVSGMTLLIIAVRSGSIAVVRALLNE 646
            LS SP   RQ S R+++ S+++L  VE+ D + +R  L  + K   ++++ PS    HR RTPLMAAAATG  +LF T+LHA NR       +  ++ LR+ QL+  D SGMTLL++A RSG++ ++ A++  
Sbjct:   51 LSVSPTFGRQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVER 183
[Close]
BLAST of mRNA_H-paniculata_contig16394.3653.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.330e-15
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 2 
Query:  269 IYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLREQLQIEDVSGMTLLIIAVRSGSIAVVRALLNE 646
            I R++S + A+ S  LL  +E GD+ D+   L D   G    L  PS + +H+ RTPLMAAAATG+ +     L A N+ +  ++   R+ ++R QL   D  GMT L++A RS S+AV+  LL E
Sbjct:   50 IERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQY--SNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTE 173
[Close]
BLAST of mRNA_H-paniculata_contig16394.3653.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-7
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  338 DVSDVRTFLVDNQKGLHDS-LIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFIT-----NHDDGRKVKLREQLQIEDVSGMTLLIIAVRSGSIAVVRAL 637
            D+  VR  L   ++ L    L+ PS   RH+ RTPLMAAAATG+  +   +L AF   F+      N  + R   +++QL + DV GMTLL+ A  + S AV +AL
Sbjct:   44 DLVAVRNILSTMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEVKENMVNARMKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQAL 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16394.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FST7_ECTSI3.730e-2242.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB0_9PHAE5.610e-2041.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN08_ECTSI2.330e-1539.68Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KM21_9PHAE1.360e-739.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16394contigH-paniculata_contig16394:3591..4999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size673
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16394.3653.1prot_H-paniculata_contig16394.3653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16394 3591..4587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929308.2269998-CDS-H-paniculata_contig16394:3590..37401622929308.2269998-CDS-H-paniculata_contig16394:3590..3740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 3591..3740 -
1691480808.944316-CDS-H-paniculata_contig16394:3590..37401691480808.944316-CDS-H-paniculata_contig16394:3590..3740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 3591..3740 -
1622929308.2445867-CDS-H-paniculata_contig16394:4229..43071622929308.2445867-CDS-H-paniculata_contig16394:4229..4307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 4230..4307 -
1691480808.954938-CDS-H-paniculata_contig16394:4229..43071691480808.954938-CDS-H-paniculata_contig16394:4229..4307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 4230..4307 -
1622929308.2573636-CDS-H-paniculata_contig16394:4554..45871622929308.2573636-CDS-H-paniculata_contig16394:4554..4587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 4555..4587 -
1691480808.9645822-CDS-H-paniculata_contig16394:4554..45871691480808.9645822-CDS-H-paniculata_contig16394:4554..4587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16394 4555..4587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929308.2687669-UTR-H-paniculata_contig16394:4587..49991622929308.2687669-UTR-H-paniculata_contig16394:4587..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16394 4588..4999 -
1691480808.974295-UTR-H-paniculata_contig16394:4587..49991691480808.974295-UTR-H-paniculata_contig16394:4587..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16394 4588..4999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16394.3653.1

>prot_H-paniculata_contig16394.3653.1 ID=prot_H-paniculata_contig16394.3653.1|Name=mRNA_H-paniculata_contig16394.3653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLREQLQ
IEDVSGMTLLIIAVRSGSIAVVRALLNERGIWMPRR*
back to top

mRNA from alignment at H-paniculata_contig16394:3591..4999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16394.3653.1 ID=mRNA_H-paniculata_contig16394.3653.1|Name=mRNA_H-paniculata_contig16394.3653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1409bp|location=Sequence derived from alignment at H-paniculata_contig16394:3591..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATCTAATCCAGTTCTTCTCATCCCATCAATGCCTACACTTCACAAG
GTTCGCGAGACTGGGACCTAGGTCAATCGTGTGAATATCGATTGGACCTT
ATATCACCTAAGCATACTGCATCTAATATAGAGCTAGGTCGTTCATCGAT
ATCTCTTAGAAAATACGAGCTCGGAGCACTTTTTCACCCTCGCCTCGCGC
TGTCTGTTAACGTATATGCCGCGAGAACGCAGAAAGCGTTCGACACATTG
TTGAGCAACTCTCCAAGAATCTATCGCCAATACAGCACGCGGAAGGCAAA
GTGGTCACACAAGCTACTGCAAGTGGTCGAGACTGGAGATGTCAGCGATG
TTCGGACTTTCTTGGTTGACAATCAAAAGGGCCTACATGACTCCCTGATT
GAACCCAGTGAGATGCTGAGACACCGCTTTCGGACTCCACTTATGGTACG
TACGCTATGGTCACGTGTTCTATGTACAGACACGTCAGAAAAAATACGTG
GTGTACAAGACTAGTCAATTTTGTTGCGTCCGGGTAGAACTTAGGTTGGT
AGCATTCAGACATTACACCCGTGTGTGATGTGCATGTCATTCAATTATCT
ACCGCTTTCCAAACACCCCCCTCTTTACCGTATCGACTCTCTACCGACAT
TTCGCGAATTACCATCGATGACTGTACCGACGCTGCTTCTAGGCGGCCGC
TGCTACTGGAGAGTTTTCGCTGTTCAGGACCATCTTACATGCTTTCAACA
GGTTCTTCATCACGAACCATGTGAGGAGTTTTTCAGCAGCAGTAAGAATG
TTGAGAAATATTCGTCCGCGGGAAAACGATGTGGTGTCAACTGTCGCAGG
GAACTGTGACAAACAAATCTGTTTCTACTGCGTATAGCTGAGCACACACA
TCGTAGTAGCAGTGAAAATATTACAGAGCCGACGCTAGGTCCGTAGCAAC
ATCGTGAATAGCGCATGTTTCCTTGCTACAGACATTTCTGCGAGCTCCGG
TGAGTCAAGAATTGAAGGAGCATTTTTCGCTGTAGAAAGACCTCAGCAAT
TTGCATTGTTTCCTCACTATTGTCCATCATTCTCTTACTCAGTACTTCCG
GGGCCGCGCATTCATCACAAAATATTTCGGCATCGGACCACAATCCGTAT
CCATATACCAGAAAGTACAATTTCACCCGGCGAAGAAGTCGCATCAATCT
TCCGGATGGATGTGTTGCAAACATTCACTCGTCATGTCAATTCGCTTTCT
TGCTTGCAGGACGACGGCCGGAAGGTCAAACTGAGGGAGCAGTTACAAAT
CGAAGACGTCAGCGGCATGACACTCCTGATAATCGCCGTCAGAAGTGGGA
GTATCGCGGTCGTTCGAGCTTTGTTGAACGAAAGAGGAATCTGGATGCCG
AGGAGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16394:3591..4999-

>mRNA_H-paniculata_contig16394.3653.1 ID=mRNA_H-paniculata_contig16394.3653.1|Name=mRNA_H-paniculata_contig16394.3653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig16394:3591..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAGACACCGCTTTCGGACTCCACTTATGATGCTGAGACACCGCTT
TCGGACTCCACTTATGGCGGCCGCTGCTACTGGAGAGTTTTCGCTGTTCA
GGACCATCTTACATGCTTTCAACAGGTTCTTCATCACGAACCATGCGGCC
GCTGCTACTGGAGAGTTTTCGCTGTTCAGGACCATCTTACATGCTTTCAA
CAGGTTCTTCATCACGAACCATGACGACGGCCGGAAGGTCAAACTGAGGG
AGCAGTTACAAATCGAAGACGTCAGCGGCATGACACTCCTGATAATCGCC
GTCAGAAGTGGGAGTATCGCGGTCGTTCGAGCTTTGTTGAACGAAAGAGG
AATCTGGATGCCGAGGAGGTAGGACGACGGCCGGAAGGTCAAACTGAGGG
AGCAGTTACAAATCGAAGACGTCAGCGGCATGACACTCCTGATAATCGCC
GTCAGAAGTGGGAGTATCGCGGTCGTTCGAGCTTTGTTGAACGAAAGAGG
AATCTGGATGCCGAGGAGGTAG
back to top