mRNA_H-paniculata_contig1639.3650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1639.3650.1
Unique NamemRNA_H-paniculata_contig1639.3650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1639.3650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1639contigH-paniculata_contig1639:6381..7536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929307.835904-CDS-H-paniculata_contig1639:6381..66061622929307.835904-CDS-H-paniculata_contig1639:6381..6606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1639 6382..6606 -
1691480808.7679186-CDS-H-paniculata_contig1639:6381..66061691480808.7679186-CDS-H-paniculata_contig1639:6381..6606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1639 6382..6606 -
1622929307.8523169-CDS-H-paniculata_contig1639:7479..75361622929307.8523169-CDS-H-paniculata_contig1639:7479..7536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1639 7480..7536 -
1691480808.7764745-CDS-H-paniculata_contig1639:7479..75361691480808.7764745-CDS-H-paniculata_contig1639:7479..7536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1639 7480..7536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1639.3650.1prot_H-paniculata_contig1639.3650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1639 6382..7536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1639.3650.1

>prot_H-paniculata_contig1639.3650.1 ID=prot_H-paniculata_contig1639.3650.1|Name=mRNA_H-paniculata_contig1639.3650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
KEVHLPRLPSGGNLDNVYEVRPARMLPLPPTWRTTDLHHEHDCNGRTQRG
TLSHDRTTPISSHPWPRASICGSGSGNTSGDATFDAGAGWGNIM
back to top

mRNA from alignment at H-paniculata_contig1639:6381..7536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1639.3650.1 ID=mRNA_H-paniculata_contig1639.3650.1|Name=mRNA_H-paniculata_contig1639.3650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-paniculata_contig1639:6381..7536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAAGTGCATCTCCCTCGGTTGCCTAGCGGTGGGAACTTGGACAACGT
TTACGAGGTAATGACAATGGGATTGGAGAATACGGGGGTGGTCGAGAATT
GAACTGGCTGTGGCCGTCACATCGCGGATTAAGTATGTAGTTGAAAGTGA
TGGGGTTCGAATCCTGTCACATCGGAGGGTTTGTGGGTTCAATTTGGCTG
GCTTGCGATTGTTCTCTCTCTCTCAAATTTCGAACGTCACATTTACTCTC
CTTGCGGAGTAACTGTCTGACCAAGTCGTACGATGGGTTATTTTTTGCTT
TTATGAGGTGTGGCCGCTTGCTGTGCTCCCGCAGGTGGTCGTCCTGTGTC
TTGTTTGCTTACTGTGCCTTGAGGTGTTGGCGTGTGTGTCCTTTTCGATT
GTTCTGTTCGATTAAACTTGATATAACTTGTCCATTATTTCAAGTTTGTG
CTCGTTCCTTGAGATGTTTGATGTTTTGACGAAATGCGCAAACCTCTTTT
GGACTGTTGTGACCGCCAGCTGAAAGGCTGATGTCATGCCCTCGTCCCCT
GGAGGAATTATTGTTGGCATTTTAGTGTATCAGGTGTGGCGCCATGTATG
ATGTAAAATGATACAGACAGGAAACAGACTAGAGTTGTTGCGTGGTGTTA
ATAAATAGGTCATGCTACCGTCCATCTATTCACCCCGATCGAGTTACTGC
GCGTCTCTTCGATCATAACAGTTTTTACCAAGTACAGTATTCTCCTCTGC
GCTCTAAAAAGTCAGTGGATCGATCCGCAACGCAACATTGAATCTGTTTG
CATCTTGCGCTGAATCAGCAATCTGTTCTGTCGTCGTTTGGCTTTTCCCA
TCTCGCTTCACTGGTTCGAACATTTGTTGACATCCTGCATCAACGATATG
GAAAAAAATAACGTACAAAATGAAACGCAGGTCCGACCAGCACGGATGCT
CCCGCTGCCGCCAACCTGGAGAACGACGGACCTCCACCACGAGCATGACT
GCAATGGCCGCACTCAGCGGGGCACACTTTCGCACGACCGCACCACGCCG
ATCTCTTCTCACCCGTGGCCCCGCGCCTCAATCTGTGGCTCGGGATCGGG
CAACACCAGCGGCGATGCCACCTTTGATGCGGGCGCAGGCTGGGGCAACA
TCATGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1639:6381..7536-

>mRNA_H-paniculata_contig1639.3650.1 ID=mRNA_H-paniculata_contig1639.3650.1|Name=mRNA_H-paniculata_contig1639.3650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig1639:6381..7536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAAGTGCATCTCCCTCGGTTGCCTAGCGGTGGGAACTTGGACAACGT
TTACGAGAAGGAAGTGCATCTCCCTCGGTTGCCTAGCGGTGGGAACTTGG
ACAACGTTTACGAGGTCCGACCAGCACGGATGCTCCCGCTGCCGCCAACC
TGGAGAACGACGGACCTCCACCACGAGCATGACTGCAATGGCCGCACTCA
GCGGGGCACACTTTCGCACGACCGCACCACGCCGATCTCTTCTCACCCGT
GGCCCCGCGCCTCAATCTGTGGCTCGGGATCGGGCAACACCAGCGGCGAT
GCCACCTTTGATGCGGGCGCAGGCTGGGGCAACATCATGGTCCGACCAGC
ACGGATGCTCCCGCTGCCGCCAACCTGGAGAACGACGGACCTCCACCACG
AGCATGACTGCAATGGCCGCACTCAGCGGGGCACACTTTCGCACGACCGC
ACCACGCCGATCTCTTCTCACCCGTGGCCCCGCGCCTCAATCTGTGGCTC
GGGATCGGGCAACACCAGCGGCGATGCCACCTTTGATGCGGGCGCAGGCT
GGGGCAACATCATG
back to top