mRNA_H-paniculata_contig16375.3645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16375.3645.1
Unique NamemRNA_H-paniculata_contig16375.3645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16375.3645.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.630e-31
Identity = 89/210 (42.38%), Postives = 122/210 (58.10%), Query Frame = 3 
Query:  267 ALTHASVGLHVEDHPLLLQYKGMRAGRTSQNAVNHLRYNADMMMLAHNDPGDGAGFTCNKRVLMDDLNGNSSGPVRAALPLMNDIPVESAKTDIPPRCCLFLANSWYGRYFNMGDTVISLGAESNQIMETALDRARKVEVSVASSDGAREEVAKRAETGFLAAYKEGKFKAASSPANEVLIRHGILPDRVPVDTTPAKIKAIVAAEVERQ 896
            A+  A VGL VEDHPL+L Y     GR    A NHL+ + DM++L HN+   GA FTCNKRV +DD  G  S     ++ LM D+  E A TDI  R   FL N    RY + GDTV SL AE + ++E AL+R+R+VEV VA+ +  +EEV K     F  AYK GK+KA++S A E +I    LP  +  +  P ++   V + + ++
Sbjct:  412 AVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGAATDIVMRPLHFLIN----RYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNS-KEEVRKNLLASFSRAYKAGKWKASTSLAQERVISPSCLPLGLEANVIPHEVHRFVDSTMNQE 612
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BLAST of mRNA_H-paniculata_contig16375.3645.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.550e-15
Identity = 72/219 (32.88%), Postives = 102/219 (46.58%), Query Frame = 3 
Query:  270 LTHASVGLHVEDHPLLLQYKGMRAGRTSQNAVNHLRYNADMMMLAH-NDPGDGAG--FTCNKRVLMDDLNG-----NSSGPV-------RAALPLMNDIPVESAKTDIPPRCCLFLANSWYGRYFNMGDTVISLGAESNQIMETALDRARKVEVSVASSD--GAREEVAKRAETGFLAAYKEGKFKAASSPANEVLIRHGILPDRVPVDTTPAKIKAIV 875
            L    +G+ VEDH L+++Y     G T+++    +    D  ++AH N  GDG G  FTCN  V      G     +S G         R   PLM D+P +            F    W       GDTV+S+ AES+ ++E AL+  RKVE  + +S+  GA   V  R E  +  A+++G F    S +    I HG LPD +P  TTP +I A V
Sbjct:  201 LQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWT----KAGDTVVSMHAESDGVVECALNLGRKVEAFLVASEHHGA---VTTRVEEAWEGAWRKGLFTDDGSASEITYISHGSLPDGIPETTTPNRILADV 412
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BLAST of mRNA_H-paniculata_contig16375.3645.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.120e-14
Identity = 71/219 (32.42%), Postives = 101/219 (46.12%), Query Frame = 3 
Query:  270 LTHASVGLHVEDHPLLLQYKGMRAGRTSQNAVNHLRYNADMMMLAH-NDPGDGAG--FTCNKRVLMDDLNG-----NSSGPV-------RAALPLMNDIPVESAKTDIPPRCCLFLANSWYGRYFNMGDTVISLGAESNQIMETALDRARKVEVSVASSD--GAREEVAKRAETGFLAAYKEGKFKAASSPANEVLIRHGILPDRVPVDTTPAKIKAIV 875
            L    +G+ VEDH L+++Y     G T+++    +    D  ++AH N  GDG G  FTCN  V      G     +S G         R   PLM D+P +            F    W       GDTV+S+ AES+ ++E AL+  RKVE  + +S+  GA   V  R E  +  A+++G F      +    I HG LPD +P  TTP +I A V
Sbjct:  702 LQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWT----KAGDTVVSMHAESDGVVEGALNLGRKVEAFLVASEHHGA---VTTRVEEAWEGAWRKGLFTDDGDASEITYISHGSLPDGIPEITTPHRILADV 913
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BLAST of mRNA_H-paniculata_contig16375.3645.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.630e-9
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 RIENIVIHDGVPLAAGSAAMTDGSLSTTCAAKLVVVSIAGDKTLLNPSTSTDARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGR 258
            R EN  +HD VPL    + +    LS   A KLV+VSI  ++ LL  S +T+  L ++  +V+  +HP GT+A++VPHPW  H  R
Sbjct:  383 RDENATLHDTVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHR 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16375.3645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.630e-3142.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI1.550e-1532.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.120e-1432.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC60_9PHAE8.630e-940.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16375contigH-paniculata_contig16375:3764..5462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size905
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16375.3645.1prot_H-paniculata_contig16375.3645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16375 4439..5462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929307.1564085-UTR-H-paniculata_contig16375:3763..40271622929307.1564085-UTR-H-paniculata_contig16375:3763..4027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16375 3764..4027 +
1691480808.4958308-UTR-H-paniculata_contig16375:3763..40271691480808.4958308-UTR-H-paniculata_contig16375:3763..4027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16375 3764..4027 +
1622929307.1697454-UTR-H-paniculata_contig16375:4370..44381622929307.1697454-UTR-H-paniculata_contig16375:4370..4438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16375 4371..4438 +
1691480808.5065906-UTR-H-paniculata_contig16375:4370..44381691480808.5065906-UTR-H-paniculata_contig16375:4370..4438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16375 4371..4438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929307.1824522-CDS-H-paniculata_contig16375:4438..46861622929307.1824522-CDS-H-paniculata_contig16375:4438..4686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 4439..4686 +
1691480808.516114-CDS-H-paniculata_contig16375:4438..46861691480808.516114-CDS-H-paniculata_contig16375:4438..4686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 4439..4686 +
1622929307.196034-CDS-H-paniculata_contig16375:4755..49511622929307.196034-CDS-H-paniculata_contig16375:4755..4951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 4756..4951 +
1691480808.5253482-CDS-H-paniculata_contig16375:4755..49511691480808.5253482-CDS-H-paniculata_contig16375:4755..4951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 4756..4951 +
1622929307.210448-CDS-H-paniculata_contig16375:5333..54621622929307.210448-CDS-H-paniculata_contig16375:5333..5462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 5334..5462 +
1691480808.5434375-CDS-H-paniculata_contig16375:5333..54621691480808.5434375-CDS-H-paniculata_contig16375:5333..5462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16375 5334..5462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16375.3645.1

>prot_H-paniculata_contig16375.3645.1 ID=prot_H-paniculata_contig16375.3645.1|Name=mRNA_H-paniculata_contig16375.3645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MRAGRTSQNAVNHLRYNADMMMLAHNDPGDGAGFTCNKRVLMDDLNGNSS
GPVRAALPLMNDIPVESAKTDIPPRCCLFLANSWYGRYFNMGDTVISLGA
ESNQIMETALDRARKVEVSVASSDGAREEVAKRAETGFLAAYKEGKFKAA
SSPANEVLIRHGILPDRVPVDTTPAKIKAIVAAEVERQCAT
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mRNA from alignment at H-paniculata_contig16375:3764..5462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16375.3645.1 ID=mRNA_H-paniculata_contig16375.3645.1|Name=mRNA_H-paniculata_contig16375.3645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-paniculata_contig16375:3764..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATCGAGAACATTGTTATCCATGATGGGGTGCCACTTGCAGCTGGGTC
GGCGGCCATGACAGATGGGAGTCTATCCACCACGTGTGCAGCCAAATTGG
TGGTTGTCTCCATTGCAGGAGACAAGACCCTCCTCAACCCTTCCACATCA
ACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGCA
CCCCCGTGGGACTGTTGCAATCATGGTACCTCACCCTTGGCATCTGCACG
CTGGACGCACCACAGTGAGTGTTTTGTCTTTGCTGTATGTGCAACTTTAT
AGAAAATACGCCATTGCTGTAACATGGAAGCCCATCGACCGCTTCAGCCC
CCTATACCCAATGGTTTATGGGAGGAGAAAGTAGCGTGTACACTGCATAA
TAGAGTGTGCAACATGATTGCACCAAGGTGTAATGTGAACGTGCGATTGG
GGTATCACCGGACGTCCATTCCACGTTTTTTCACATGTTGCACGATGAAC
TCCGCCTGTTGAGGCATATGAATGACCACGGAGGTATTGGAGCACACACA
TATTGGGTGTATTCCAAACGTCAACGCATTCCGTCGACTTTCTTACTGTG
TTTGCAGGTGCTCTGACCCATGCATCGGTAGGATTGCACGTTGAGGATCA
CCCACTTCTCCTCCAGTACAAAGGTATGAGGGCCGGGCGCACATCGCAGA
ATGCTGTCAATCATCTACGTTACAATGCAGACATGATGATGTTGGCACAC
AACGACCCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCGTGTACTGAT
GGACGATCTCAACGGCAACAGCAGCGGTCCCGTCAGAGCAGCCCTCCCAT
TGATGAACGACATACCTGTTGAGAGTGCCAAGACGGATATACCACCCAGG
TGTTGCCTGTTCCTCGCTAACAGGGTACTTGGCAAAAATCCCTTCTTTTT
GCCAACTTATCGTCAGTACTACTGATAATGCCTTGTTCTTATTTGGTATG
GCAGGTACTTCAACATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGT
AATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTC
CGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAAGCGAGCAGAAA
CGGGTTTCTTGGCGGCTTACAAGGAGGGGAAATTCAAGGTCAGTACAGAG
TCGGAGATTGTCCAATGTTTGGTGTGGTGTTGTGTGCGACAGTCATCAAC
ATCTACAAGTAAATGTGTTGTGCAAGCACTATCACTATCTGCAGTACCAA
GCAGCTGAGCCAGTTACGAAAAATTTGTCAACGCTGATTGACAGAGATGC
CTAGTAGTAGTGGCACCCGAAGAAAGCCACTTAAGGCTTGGAAAATAGAA
CGTATTAATGAACGGAAGCCGAATTGTTTAGTTGACATTGATGCGTTTTG
AGAAGCTGTTTTGTTCGCGCTGCCGTTTCTTGATGATGCAGACACTTTTT
TTTATGTTGTGTATAATACGTACGTTGACTACTATGTAATATATTCCCTC
ATGCTCCCCTTGTCATACAGGCAGCATCATCCCCGGCCAATGAGGTTCTC
ATTCGCCATGGTATTCTACCGGATAGGGTCCCAGTTGATACAACGCCTGC
CAAAATTAAAGCAATAGTGGCAGCAGAAGTAGAAAGGCAATGCGCCACT
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Coding sequence (CDS) from alignment at H-paniculata_contig16375:3764..5462+

>mRNA_H-paniculata_contig16375.3645.1 ID=mRNA_H-paniculata_contig16375.3645.1|Name=mRNA_H-paniculata_contig16375.3645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig16375:3764..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAA
TGCAGACATGATGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAGCGTGTACTGATGGACGATCTCAACGGCAACAGCAGC
GGTCCCGTCAGAGCAGCCCTCCCATTGATGAACGACATACCTGTTGAGAG
TGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGCTAACAGAT
GAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATG
CAGACATGATGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTC
ACGTGCAACAAGCGTGTACTGATGGACGATCTCAACGGCAACAGCAGCGG
TCCCGTCAGAGCAGCCCTCCCATTGATGAACGACATACCTGTTGAGAGTG
CCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGCTAACAGTTGG
TATGGCAGGTACTTCAACATGGGAGATACAGTCATATCGCTGGGCGCTGA
GAGTAATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGG
TCTCCGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAAGCGAGCA
GAAACGGGTTTCTTGGCGGCTTACAAGGAGGGGAAATTCAAGTTGGTATG
GCAGGTACTTCAACATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGT
AATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTC
CGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAAGCGAGCAGAAA
CGGGTTTCTTGGCGGCTTACAAGGAGGGGAAATTCAAGGCAGCATCATCC
CCGGCCAATGAGGTTCTCATTCGCCATGGTATTCTACCGGATAGGGTCCC
AGTTGATACAACGCCTGCCAAAATTAAAGCAATAGTGGCAGCAGAAGTAG
AAAGGCAATGCGCCACTGCAGCATCATCCCCGGCCAATGAGGTTCTCATT
CGCCATGGTATTCTACCGGATAGGGTCCCAGTTGATACAACGCCTGCCAA
AATTAAAGCAATAGTGGCAGCAGAAGTAGAAAGGCAATGCGCCACT
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