mRNA_H-paniculata_contig1637.3642.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1637.3642.1 vs. uniprot
Match: A0A6H5JM50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM50_9PHAE) HSP 1 Score: 663 bits (1711), Expect = 4.660e-218 Identity = 442/877 (50.40%), Postives = 530/877 (60.43%), Query Frame = 1
Query: 19 AAAALAAARTCSRTRREEQPWWEVYLGGVFPVRCIRVRHPDRRTEATKAGALPYVDVAPFWIMTASGPIGEMEPKKARGVAIASKRFSSHKKVTVWDLGVNHFAASVRVQAEGVKSLQLARVEVIKGGGTRQAKDVIQQQYSVYTQQR-LDAQYGSNGSVDRNGASNQSTGEATNNSSPTKSMPSKRLRRLYAERENVGEAGNNHPESEP---DYHADGGPASAVTSPAVGAPGAPPSSSAQASTTPAAEXXXXXXXXXXXXXXXXXXXXXXXTGGGAGAGDPRISADGPYSSVVTGWQSTTHNRPRTCPPSKGRGKKM---------------------GLSAENVPRLLLRVMVGYDWVDEFNGQEVRVRGAFTERDVGILEEIFFRCALGDDVDARAVATVSDPSLRLDPGELCGDLRRLELQVQTNTGSKNKSPMLLAIRESPYLLQLLSSGIVEALPDALARAEAQLPQELRPLSVDWTRFLGVMGLCLDAAAKGSGIVASNAVARLFEEIHDDKLDFLTRKVSRLPPARRPPHATGGGAVAKVGTVAASEMA-AKRGADGR-GVSRGVGGEIHNVSHDKTQSALAAS------------AAMDGGEMISIGGSAATT---------AAEEGASVETGDETLDSSMGGTGAGATSRRRQ----GDQGTGGFAAWGRERRGRGGSSSALKSLLRPQARHEIARGYGEAMSRRRERQREALQRAPEPDLEPTRAYKSCGLCQAPFPVESLVATASLKVVESFLVKAGAPNERFERKASSVCALHRLPLCVFCSQFFDPDFPDGIVPP-RGYTLKHA----QTKATASAATVGASTKGDVNSGRIRSP--QSALEANGLVPFFDDRFPDRWSEAP 2472
AAAA ARTCSRTRRE QPWWE+ LGG FPVRCIRV HPDRRTEATKAGA P+VDV+PFWIMT++G +G+ P++A+ +AI+SKR SH KVTVW+LGVNHFAA+VRVQAEGVKSLQLARVEVIKGGGT+QAKD +Q+Q + T L +G A+ ST +T + ++ +N +Y+ G T + XXXXXXXXXXXXXX PR T H RP+TC + GL E+V RLLLR MVGYDWVDEFNG++ RVRGAFTE+DV +LEEIFFRCA GD+ DARA ATVSD SLRLDPG+LCGDLRRL+LQ+QTN G K K+PMLLA+RESP L QLLSSG++EALPDALARAEA+LPQ RPL +DW RFLGVMGLCL++ G+G++A++AVARLFEE DDKL+FLTR+ +RLPP GA + G E A A GADG GV+ G G T+ A A S +A D A G+ G +S G G SR G G G A WG + RGG ++ALKSLLRPQARHE+ RGYGEA+ +RRERQREAL+RA EPD+EPTRAYK CGLCQAPFPVESL +T SLKV+ +FL AGAP+ERF+RKAS + ALHRLPLCVFC QFFDPDFP G++PP R TL + K AS ++ +S + + + SP ++ +EANGLVPFFDDRFP+RWSEAP
Sbjct: 475 AAAAXXXARTCSRTRRENQPWWEIDLGGAFPVRCIRVHHPDRRTEATKAGASPFVDVSPFWIMTSAGAMGDAAPEEAKQLAISSKRVGSHGKVTVWNLGVNHFAAAVRVQAEGVKSLQLARVEVIKGGGTQQAKDAMQRQLAARTDSNYLPHHRQHHGMFSDASAAQGSTATSTTRLAKQNTIGGXXXXXXXXXXXXXXXXXDNXXXXXXXNGNYNGRG-----------------------LKTFKSKILHFYHQDRGXXXXXXXXXXXXXXXXXXXXXXXPRAEV------AATAAGGLGHIRPKTCSAVAAGARXXXXXXXXXXXXXXXXXXXXRAEGLPGEDVRRLLLRAMVGYDWVDEFNGKDERVRGAFTEQDVVVLEEIFFRCAFGDNTDARATATVSDQSLRLDPGDLCGDLRRLQLQMQTNPGGKGKTPMLLAVRESPNLFQLLSSGVIEALPDALARAEARLPQAQRPLGLDWNRFLGVMGLCLESVYGGTGLLAASAVARLFEEKTDDKLEFLTRRRNRLPPR----DTVKVGARQQKGKYRGFESAPAVVGADGSIGVTEGTPGGA-------TKGAKAGSGTXXXXXXXXSYSAEDXXXXXXXXXXXXXXXXXXXXXXXGASRGSRRREGTPATTTSANGHGGAVASRPGGPVVVGIGGGYGDADWGNRSKRRGGGAAALKSLLRPQARHEVVRGYGEAVCKRRERQREALKRALEPDVEPTRAYKPCGLCQAPFPVESLGSTVSLKVLATFLAMAGAPSERFDRKASGLSALHRLPLCVFCGQFFDPDFPGGVIPPTRNATLTRGGGRRRLKGDASLSSSSSSLESSL---LLFSPSLRATVEANGLVPFFDDRFPERWSEAP 1308
BLAST of mRNA_H-paniculata_contig1637.3642.1 vs. uniprot
Match: D7FPB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB5_ECTSI) HSP 1 Score: 608 bits (1567), Expect = 5.590e-204 Identity = 406/858 (47.32%), Postives = 485/858 (56.53%), Query Frame = 1
Query: 19 AAAALAAARTCSRTRREEQPWWEVYLGGVFPVRCIRVRHPDRRTEATKAGALPYVDVAPFWIMTASGPIGEMEPKKARGVAIASKRFSSHKKVTVWDLGVNHFAASVRVQAEGVKSLQLARVEVIKGGGTRQAKDVIQQQYSVYTQQRLDAQYGSNGSVDRNGASNQSTGEATNNSSPTKSMPSKRLRRLYAERENVGEAGNNHPESEPDYHADGGPASAVTSPAVGAPGAPPSSSAQASTTPAAEXXXXXXXXXXXXXXXXXXXXXXXTGGGAGAGDPRIS---ADGPYSSVVTGWQSTTHNRPRTCPPSKGRGKKMGLSAENVPRLLLRVMVGYDWVDEFNGQEVRVRGAFTERDVGILEEIFFRCALGDDVDARAVATVSDPSLRLDPGELCGDLRRLELQVQTNTGSKNKSPMLLAIRESPYLLQLLSSGIVEALPDALARAEAQLPQELRPLSVDWTRFLGVMGLCLDAAAKGSGIVASNAVARLFEEIHDDKLDFLTRKVSRLPPARRPPHATGGGAVAKVGTVAASEMA-AKRGADGR-GVSRGVGGEIHNVSHDKTQSALAASAAMDGGEMISIGGSAA--TTAAEEGASVETGDETLDSSMGGTGAGATSRRRQGDQGT---------------GGFAAWGR-----------ERRGRGGSSSALKSLLRPQARHEIARGYGEAMSRRRERQREALQRAPEPDLEPTRAYKSCGLCQAPFPVESLVATASLKVVESFLVKAGAPNERFERKASSVCALHRLPLCVFCSQFFDPDFPDGIVPP-------RGYTLKHAQTKATASAATVGASTKGDVNSGRIRSPQSALEANGLVPFFDDRFPDRWSEAP 2472
AAA AAARTCSRTRRE QPWWE+ LGG FPVRCIRV HPDRRTEATKAGA P+VDV+PFWIMT++G IG+ P++A+ +AI+SKR SH KVTVW+LGVNHFAA+VRVQAEGVKSLQLARVEVIKGGGT+QAKD +Q Q + R D+ Y +P R +HA +S+ P AE GG G P+ A G SS V G + +T + + GL E+V RLLLR MVGYDWVDEFNG++ RVRGAFTE+DV +LE VQTN G K K+PMLLA+RESP L QLLSSG+VEALPDALARAEAQLPQ RPL +DWTRFLGVMGLCL++ G+G++A++AVARLFEE DDKL+FLTR+ +RLPP GA G E A A GADG GV+ G T+ A A S G ++ G +A T+ E G+S+ T D+TL GG+GA SRRR G T GG G GG ++ALKSLLRPQARHE+ RGYGEA+ +RRERQREAL+RAPEPD+EPTRAYK CGLCQAPFPVESL +T SLKV+ +FL AGAP+ERF+RKAS + ALHRLPLCVFC QFFDPDFP G++PP RG + + S++T + +S +R+ EANGLVPFFDDRFP+RWSEAP
Sbjct: 7 AAAVAAAARTCSRTRRENQPWWEIDLGGAFPVRCIRVHHPDRRTEATKAGASPFVDVSPFWIMTSAGAIGDAAPEEAKQLAISSKRVGSHGKVTVWNLGVNHFAAAVRVQAEGVKSLQLARVEVIKGGGTQQAKDAMQHQLAA----RTDSNY----------------------------LPHHRQ-----------------------HHA-----------------------VPSSSEPRAEVAAN-------------------AAGGLGHTRPQTCSAVAAGARSSSVAGERCSTTGQXXXX---XXXXXEEGLPGEDVRRLLLRAMVGYDWVDEFNGKDERVRGAFTEQDVVVLE------------------------------------------VQTNPGGKGKTPMLLAVRESPNLFQLLSSGVVEALPDALARAEAQLPQAHRPLGLDWTRFLGVMGLCLESVYSGTGLLAASAVARLFEEKTDDKLEFLTRRRNRLPPRET----VNEGAQQHKGKYRGFESAPAVVGADGSIGVAEG-------TPRGPTKGAKAGSGTT--GSSVAAGSYSAEDTSMPEAGSSIGTRDDTL-FEAGGSGASRGSRRRDGTPATTTSANGHGGALVSRPGGLVFGGXXXXXXXXXXXYRXXXXGGGAAALKSLLRPQARHEVVRGYGEAVCKRRERQREALKRAPEPDVEPTRAYKPCGLCQAPFPVESLGSTVSLKVLATFLAIAGAPSERFDRKASGLSALHRLPLCVFCGQFFDPDFPGGVIPPTRNAALTRGGGRRRLLGDVSFSSSTFSLESSLFPSSPSLRA---TAEANGLVPFFDDRFPERWSEAP 705
BLAST of mRNA_H-paniculata_contig1637.3642.1 vs. uniprot
Match: A0A7S1U916_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U916_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 4.430e-15 Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 31 LAAARTCSRTRREEQPWWEVYLGGVFPVRCIRVRHPDRRTEATKAGALPYVDVAPFWI-MTASGPIGEM--EPKKARGVAIASKRFSSHKKVTVWDLGVNHFAASVRVQAEGVKSLQLARVEVIKGGGTRQAKDVIQQQYSV 447
LAA +RT RE Q WW+V LGG++P+R ++V +P + GA Y ++APFWI ++ P+G+ E KKA A+A + + H+ T W N FA VR+Q G KS+QL V V+KGG T D +Q+++ +
Sbjct: 264 LAAGDVSTRTGREYQAWWQVDLGGLYPIRQVKV-YP----RLSARGARSY-ELAPFWIILSEKKPMGQRLTEAKKA---AVALHQVTEHQSETAWACPANTFARFVRIQVPGTKSVQLCHVAVVKGGAT---VDYVQRKHKI 393
BLAST of mRNA_H-paniculata_contig1637.3642.1 vs. uniprot
Match: A0A7S4ECL3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECL3_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.260e-5 Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1
Query: 2068 RAYKSCGLCQAPFPVESLVATASLKVVESFLVKAGAPNERFERKASSVCAL--HRLPLCVFCSQFFDPDFPDGI 2283
R Y +CGLC FP +S +A V+ + L G + + + S AL +RLP+CVFCSQF DPD GI
Sbjct: 925 RLYNACGLCLQLFPSDSYTISAPHNVIIAQLKNFGLSEDELKERGSESLALWANRLPICVFCSQFLDPDEDSGI 998 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1637.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1637.3642.1 >prot_H-paniculata_contig1637.3642.1 ID=prot_H-paniculata_contig1637.3642.1|Name=mRNA_H-paniculata_contig1637.3642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=824bp MSLAAEAAAALAAARTCSRTRREEQPWWEVYLGGVFPVRCIRVRHPDRRTback to top mRNA from alignment at H-paniculata_contig1637:1755..6814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1637.3642.1 ID=mRNA_H-paniculata_contig1637.3642.1|Name=mRNA_H-paniculata_contig1637.3642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5060bp|location=Sequence derived from alignment at H-paniculata_contig1637:1755..6814- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1637:1755..6814- >mRNA_H-paniculata_contig1637.3642.1 ID=mRNA_H-paniculata_contig1637.3642.1|Name=mRNA_H-paniculata_contig1637.3642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4944bp|location=Sequence derived from alignment at H-paniculata_contig1637:1755..6814- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |