mRNA_H-paniculata_contig16347.3632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16347.3632.1
Unique NamemRNA_H-paniculata_contig16347.3632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16347.3632.1 vs. uniprot
Match: A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.430e-8
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   16 CFDPSGAVAAR---------GEETA---RLRDFFVHQFCDHLACGENHYPLPPPPGQRGGP-NANKPW-FDNAHGTGTTSKFGVIVFLVLI-LAVFYAGVWIRHRSTSTKRDLYP 315
            CFD S   A           G ET     + D+FV QFC+HLAC ++H PL PP    GGP N   P       G GT      ++ +V+I L +FYA + +R RSTST+ DL P
Sbjct:  175 CFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPP--VDGGPANHRHPLPHGGVDGVGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLRP 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16347.3632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY37_9PHAE3.430e-840.00C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16347contigH-paniculata_contig16347:1739..4134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-28_001570.2
Exons2
Model size1824
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16347.3632.1prot_H-paniculata_contig16347.3632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16347 1739..2832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929303.2656298-CDS-H-paniculata_contig16347:1738..18281622929303.2656298-CDS-H-paniculata_contig16347:1738..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16347 1739..1828 +
1691480807.6853237-CDS-H-paniculata_contig16347:1738..18281691480807.6853237-CDS-H-paniculata_contig16347:1738..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16347 1739..1828 +
1622929303.2804081-CDS-H-paniculata_contig16347:2400..28321622929303.2804081-CDS-H-paniculata_contig16347:2400..2832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16347 2401..2832 +
1691480807.6975768-CDS-H-paniculata_contig16347:2400..28321691480807.6975768-CDS-H-paniculata_contig16347:2400..2832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16347 2401..2832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929303.4336405-UTR-H-paniculata_contig16347:2832..41341622929303.4336405-UTR-H-paniculata_contig16347:2832..4134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16347 2833..4134 +
1691480807.7055748-UTR-H-paniculata_contig16347:2832..41341691480807.7055748-UTR-H-paniculata_contig16347:2832..4134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16347 2833..4134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16347.3632.1

>prot_H-paniculata_contig16347.3632.1 ID=prot_H-paniculata_contig16347.3632.1|Name=mRNA_H-paniculata_contig16347.3632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MTTKRCFDPSGAVAARGEETARLRDFFVHQFCDHLACGENHYPLPPPPGQ
RGGPNANKPWFDNAHGTGTTSKFGVIVFLVLILAVFYAGVWIRHRSTSTK
RDLYPMCRDATVRARLSRGIAGVLRAPLNPVRGFGGNAAYGRYPGETEVL
KRSTRGDGEMTVVHRRRAKLPQG*
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mRNA from alignment at H-paniculata_contig16347:1739..4134+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16347.3632.1 ID=mRNA_H-paniculata_contig16347.3632.1|Name=mRNA_H-paniculata_contig16347.3632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2396bp|location=Sequence derived from alignment at H-paniculata_contig16347:1739..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACGAAAAGGTGTTTCGATCCGTCGGGAGCGGTCGCTGCCCGAGG
GGAGGAAACTGCTCGTTTGCGCGATTTTTTTGTGCACCAGGTGCGTTTTT
TCTTCTCTCGATCTGTTCTCCGCCACTTCGTCATTCTTATTCCAAGGGTC
ACTTACACATGAGCTTGAACGCCTAGTTATTGCTTACCGATATGTTACGC
GTACTCCGCCAGCAAAGATGCCACATGTGTCCCACTCTCATAGGGTTTGC
AAGGCTGTTGCTTTTTTTTCGCTAATCCCAACGCGATGCCCTGCGAGAAA
CGAGACTGATACAGCGGAACATTGGTCGCATTTGAAAAAAAGAGAATTTC
ATCACAAAGCACTCGCTTTTTAAACAAATCTAAATGCTAGTAGGCAGGCA
GGCAATAGCTGCTGATGAAACGTCGGTGCTTTGGAGAGCCCGTATCAAAA
ACAAGCCAAATTACGTATCAGGATGACGTAACGTCTGCTTTCGATTCTCT
GTACTGTAAAAATAGAAAACCACCGACTCAAAAGCATATCACGTGACAGC
ATCATTTTCGCCCCGCCACGTGTGCGCATGTGTCATAATCCACGACACGT
TTTTTGCTCTTTTTTTCTCCTCCCCCCCCACATGCACACACCAACCGCGT
CGACGGTGACAGTTTTGTGATCATCTAGCGTGCGGCGAAAACCACTATCC
CCTTCCCCCTCCTCCTGGTCAAAGGGGGGGACCGAACGCCAACAAACCCT
GGTTTGATAACGCCCATGGCACGGGCACCACCTCCAAATTTGGCGTTATC
GTGTTCCTCGTCTTGATCCTAGCGGTGTTTTACGCCGGGGTATGGATCCG
CCACAGATCCACTTCTACCAAGAGGGATCTATATCCGATGTGTAGAGATG
CGACGGTAAGAGCCCGACTCTCCAGGGGGATAGCAGGAGTGCTACGTGCT
CCATTAAACCCCGTCAGGGGGTTCGGCGGCAACGCGGCTTATGGTCGTTA
TCCAGGCGAGACTGAGGTCCTAAAACGGTCGACGCGTGGGGATGGGGAGA
TGACGGTGGTGCATCGCCGCCGTGCAAAGTTGCCACAAGGTTGAAGTTGG
CAGAATGACAGCGTCCGGGATATTAAAAAAAATTATAGCAAGAAAAATAT
ATATATATCCTCAAGAAAGCGCGCATTTTTTTTTATTTATTTATTTTTTA
TCTTGGTATAGGATGATGTTTAATGTATGAACCGAGTGAACGAGTCTTGT
GAGCGGAAGTCTATTAGGACGGCTGGAACCTCCCTAGTAGCGTGGTAGGG
ATTTCAACGCCGTTCAGATAATGTCTGATATCTGTCTGACTTGCGGACGA
ACAGATGCTTGGGGGAGCATTTGCGACGGAAGCTTACAAAAGCAATCGCC
TCGGTGTTCAGCAAAATATTATTTATTTACTTGATGTGCCCTTGGAAGGA
CCATCTACCAGCAGCTGACTGCTCCGAGTATTAATGGTAAAAAATGAATG
GAACAAGGGTTCAATCAACACTTTGTTTATGTGCCTTAAGCATATTCTGA
AACTGAGGCAAACACTTGGAGAAAAAAATTCGCCCCCACGCAAATATGCT
CCAAATGTTTGTTAACCTTGCAAATTGTCATAATATAACCGACGTTTTTT
TTCAGTTGAAAAAAAAACCGCCTCTTGCGGTTAATCGTCCGATGTAGTTG
AAAGGTTTTTTATCTGTGTATGTGAGGGGGAGAGCGGGAGAGAGAGAGAT
AGAGAGAGAGAGAAATTACCGGAATGTTTGCTGTCGCAGGTGTTATCGAT
GGGGACGTGTGTATGTGCACGACGACGGATGAGAGCGCAAAAGCACTTCA
CCGGGAGTAGTTTGATATATATTGTTTTCAAGAAGAAAAACACAGAAATG
ATAGATATGTCTTGTGTGTCTGTGTGTCTGTCTGTTGCTGTAGTAAAACA
AATCTTTCGCCGCGACGAGAGTGGTATGTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATC
TGTCTATCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTTATCCATTTTGAATT
GGTCGTCGATTCCATATCTATGGCTGATGAGTGGAATTTGGTAACTCGAT
GCACATTTGATAGGGGAAAAAGCAAGAAGTGTATTCCGCCAGCAGTATTA
AGTAAAGATCCAAAATTAACTTGGTCGAGGTTTGTTACATGCCAGTGAGT
TTGTACATCAAGGGGAGTCAATATGGGAGGATATGGTCGCATCTAAGCGA
GCTGTATGTATTTTCCGCGTTTATTTCGATACGTGTGGCGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16347:1739..4134+

>mRNA_H-paniculata_contig16347.3632.1 ID=mRNA_H-paniculata_contig16347.3632.1|Name=mRNA_H-paniculata_contig16347.3632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig16347:1739..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACGAAAAGGTGTTTCGATCCGTCGGGAGCGGTCGCTGCCCGAGG
GGAGGAAACTGCTCGTTTGCGCGATTTTTTTGTGCACCAGATGACAACGA
AAAGGTGTTTCGATCCGTCGGGAGCGGTCGCTGCCCGAGGGGAGGAAACT
GCTCGTTTGCGCGATTTTTTTGTGCACCAGTTTTGTGATCATCTAGCGTG
CGGCGAAAACCACTATCCCCTTCCCCCTCCTCCTGGTCAAAGGGGGGGAC
CGAACGCCAACAAACCCTGGTTTGATAACGCCCATGGCACGGGCACCACC
TCCAAATTTGGCGTTATCGTGTTCCTCGTCTTGATCCTAGCGGTGTTTTA
CGCCGGGGTATGGATCCGCCACAGATCCACTTCTACCAAGAGGGATCTAT
ATCCGATGTGTAGAGATGCGACGGTAAGAGCCCGACTCTCCAGGGGGATA
GCAGGAGTGCTACGTGCTCCATTAAACCCCGTCAGGGGGTTCGGCGGCAA
CGCGGCTTATGGTCGTTATCCAGGCGAGACTGAGGTCCTAAAACGGTCGA
CGCGTGGGGATGGGGAGATGACGGTGGTGCATCGCCGCCGTGCAAAGTTG
CCACAAGGTTGATTTTGTGATCATCTAGCGTGCGGCGAAAACCACTATCC
CCTTCCCCCTCCTCCTGGTCAAAGGGGGGGACCGAACGCCAACAAACCCT
GGTTTGATAACGCCCATGGCACGGGCACCACCTCCAAATTTGGCGTTATC
GTGTTCCTCGTCTTGATCCTAGCGGTGTTTTACGCCGGGGTATGGATCCG
CCACAGATCCACTTCTACCAAGAGGGATCTATATCCGATGTGTAGAGATG
CGACGGTAAGAGCCCGACTCTCCAGGGGGATAGCAGGAGTGCTACGTGCT
CCATTAAACCCCGTCAGGGGGTTCGGCGGCAACGCGGCTTATGGTCGTTA
TCCAGGCGAGACTGAGGTCCTAAAACGGTCGACGCGTGGGGATGGGGAGA
TGACGGTGGTGCATCGCCGCCGTGCAAAGTTGCCACAAGGTTGA
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