prot_H-paniculata_contig16347.3632.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16347.3632.1
Unique Nameprot_H-paniculata_contig16347.3632.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
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BLAST of mRNA_H-paniculata_contig16347.3632.1 vs. uniprot
Match: A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.960e-10
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 0 
Query:    6 CFDPSGAVAAR---------GEETA---RLRDFFVHQFCDHLACGENHYPLPPPPGQRGGP-NANKPW-FDNAHGTGTTSKFGVIVFLVLI-LAVFYAGVWIRHRSTSTKRDLYP 105
            CFD S   A           G ET     + D+FV QFC+HLAC ++H PL PP    GGP N   P       G GT      ++ +V+I L +FYA + +R RSTST+ DL P
Sbjct:  175 CFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPP--VDGGPANHRHPLPHGGVDGVGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLRP 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16347.3632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY37_9PHAE7.960e-1040.00C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..72
NoneNo IPR availableTMHMMTMhelixcoord: 73..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16347contigH-paniculata_contig16347:1739..2832 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16347.3632.1mRNA_H-paniculata_contig16347.3632.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16347 1739..4134 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16347.3632.1 ID=prot_H-paniculata_contig16347.3632.1|Name=mRNA_H-paniculata_contig16347.3632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MTTKRCFDPSGAVAARGEETARLRDFFVHQFCDHLACGENHYPLPPPPGQ
RGGPNANKPWFDNAHGTGTTSKFGVIVFLVLILAVFYAGVWIRHRSTSTK
RDLYPMCRDATVRARLSRGIAGVLRAPLNPVRGFGGNAAYGRYPGETEVL
KRSTRGDGEMTVVHRRRAKLPQG*
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