mRNA_H-paniculata_contig16336.3627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16336.3627.1
Unique NamemRNA_H-paniculata_contig16336.3627.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16336.3627.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.360e-19
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   13 EEELEPEPYPPNLIRGVKVIKKSAAGIPGARRLYVHDDSIELFNPEKKRFRSQSKFFLISELTA 204
            EEE+EPEPYPPNL RGVKV K+S AG    RRLYV  D+IEL NPEK+ FRSQSK F +SELTA
Sbjct:   29 EEEMEPEPYPPNLERGVKVRKRSMAGKSEIRRLYVRGDTIELVNPEKRMFRSQSKIFPLSELTA 92
[Close]
BLAST of mRNA_H-paniculata_contig16336.3627.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.140e-18
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   13 EEELEPEPYPPNLIRGVKVIKKSAAGIPGARRLYVHDDSIELFNPEKKRFRSQSKFFLISELTA 204
            EEE+EPEPYPPNL RGVKV K+S AG    RRLYV  D+IEL NPEK+ FRSQSK F +SELTA
Sbjct:   29 EEEMEPEPYPPNLERGVKVRKRSMAGKSEIRRLYVRGDTIELVNPEKRMFRSQSKVFPLSELTA 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16336.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LG27_9PHAE8.360e-1971.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB0_ECTSI1.140e-1871.88NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16336contigH-paniculata_contig16336:3638..4627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.871846-CDS-H-paniculata_contig16336:3637..36971622929302.871846-CDS-H-paniculata_contig16336:3637..3697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16336 3638..3697 +
1691480807.480216-CDS-H-paniculata_contig16336:3637..36971691480807.480216-CDS-H-paniculata_contig16336:3637..3697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16336 3638..3697 +
1622929302.885556-CDS-H-paniculata_contig16336:4482..46261622929302.885556-CDS-H-paniculata_contig16336:4482..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16336 4483..4626 +
1691480807.4957297-CDS-H-paniculata_contig16336:4482..46261691480807.4957297-CDS-H-paniculata_contig16336:4482..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16336 4483..4626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16336.3627.1prot_H-paniculata_contig16336.3627.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16336 3638..4626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16336.3627.1

>prot_H-paniculata_contig16336.3627.1 ID=prot_H-paniculata_contig16336.3627.1|Name=mRNA_H-paniculata_contig16336.3627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
TALEEEELEPEPYPPNLIRGVKVIKKSAAGIPGARRLYVHDDSIELFNPE
KKRFRSQSKFFLISELTA
back to top

mRNA from alignment at H-paniculata_contig16336:3638..4627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16336.3627.1 ID=mRNA_H-paniculata_contig16336.3627.1|Name=mRNA_H-paniculata_contig16336.3627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at H-paniculata_contig16336:3638..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCCCTGGAGGAGGAGGAGCTCGAACCGGAGCCCTATCCGCCCAACTT
GATCCGCGGGGTGAGATTCGAAAAAAACACTTGAAAAATGGAGATTCCGT
CCAAACGCCTCCAGTCAAAGTCAATCATTTTAGTTGGGTCTTATTTTTTG
GAATGAAGTGTAGATCGGGAGTTGAATAGCTGCACACCACACCGCGCCCA
CAAGCGGTACCGTGTCCGTGTGGCTTTCTTGACGAGTGTGAAGATCTTAT
ATCCCGAGTTATCGACAGTATGGAGCTATGAATATAATAGTCTTAGTAGG
GCACCATATATATATATATATATATATATATATATTTTATGAATCATTTG
AGTACAGTATGGAATTTTTTTTCTTGAAGGAAAATAGGACGACCACCGCC
GCCGCCACCACCACCACCACTACTGCGACCGTCGTCGGAAATCTTCTTTT
TGGAGGAAAACGGGAAATGACTCTTTAGTTCTGTTTTAGTTTGTTTCATT
GGTCTGAAAACGATTTTAATCCGTCTTTTCGGTTCGACCCTCTCCCTCTT
CTCCATTCGCCAAAATCTACGACTTACTTTTTTTCGAGAGTCTACACATT
CATTAATCGAAGGGCGAAGATTCGGGATAAAAAAACAAAAATGAAAAAAT
GTACCTACCTCGTGAGTCCAAAAATTCACGAACGATTTGACTCTTTGGGG
TTAGGTGTACTAGTGGTGTATGTGTGTTTTTTGTCCTGCCTTTCATTCAA
ATGTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCT
CTGTCTCTCTCTTTCTCAAAAACACACACATGCGCGCATTCAAAGGTGAA
AGTGATAAAGAAGAGTGCGGCTGGAATTCCCGGGGCCCGGCGGCTGTACG
TCCACGATGATTCTATCGAGCTCTTCAACCCGGAGAAGAAACGGTTCCGA
TCACAGTCCAAGTTTTTTCTCATCAGCGAACTTACGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16336:3638..4627+

>mRNA_H-paniculata_contig16336.3627.1 ID=mRNA_H-paniculata_contig16336.3627.1|Name=mRNA_H-paniculata_contig16336.3627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig16336:3638..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCCCTGGAGGAGGAGGAGCTCGAACCGGAGCCCTATCCGCCCAACTT
GATCCGCGGGACTGCCCTGGAGGAGGAGGAGCTCGAACCGGAGCCCTATC
CGCCCAACTTGATCCGCGGGGTGAAAGTGATAAAGAAGAGTGCGGCTGGA
ATTCCCGGGGCCCGGCGGCTGTACGTCCACGATGATTCTATCGAGCTCTT
CAACCCGGAGAAGAAACGGTTCCGATCACAGTCCAAGTTTTTTCTCATCA
GCGAACTTACGGCGGTGAAAGTGATAAAGAAGAGTGCGGCTGGAATTCCC
GGGGCCCGGCGGCTGTACGTCCACGATGATTCTATCGAGCTCTTCAACCC
GGAGAAGAAACGGTTCCGATCACAGTCCAAGTTTTTTCTCATCAGCGAAC
TTACGGCG
back to top