mRNA_H-paniculata_contig16326.3625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16326.3625.1
Unique NamemRNA_H-paniculata_contig16326.3625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16326.3625.1 vs. uniprot
Match: D7G1G7_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-18
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   31 LQKANGDRDPETVACLSWIAETHQKQGQYFEAEKILLQVVAFNRELLGDDDPRVADSLTDLAELLRAQGKL 243
            + + +G    ETVACLSWIAETH+KQ  Y +AE IL++VV  NR++LGD  P VADSLTDL EL RAQG L
Sbjct:  269 MDQEHGRVHSETVACLSWIAETHEKQEHYQDAEPILIEVVELNRQILGDGKPGVADSLTDLGELRRAQGNL 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16326.3625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1G7_ECTSI1.340e-1861.97Tetratricopeptide repeat family n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16326contigH-paniculata_contig16326:4930..5235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog2880.D7G1G7
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000280,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007143,GO:0007276,GO:0007292,GO:0008150,GO:0009987,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0032501,GO:0032504,GO:0033206,GO:0040038,GO:0044703,GO:0048285,GO:0048609,GO:0051179,GO:0051234,GO:0051293,GO:0051295,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0061640,GO:0071840,GO:0140013,GO:1903046
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Exons1
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.2449455-CDS-H-paniculata_contig16326:4929..52351622929302.2449455-CDS-H-paniculata_contig16326:4929..5235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16326 4930..5235 -
1691480807.3316107-CDS-H-paniculata_contig16326:4929..52351691480807.3316107-CDS-H-paniculata_contig16326:4929..5235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16326 4930..5235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16326.3625.1prot_H-paniculata_contig16326.3625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16326 4930..5235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16326.3625.1

>prot_H-paniculata_contig16326.3625.1 ID=prot_H-paniculata_contig16326.3625.1|Name=mRNA_H-paniculata_contig16326.3625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MRAFCITTKILQKANGDRDPETVACLSWIAETHQKQGQYFEAEKILLQVV
AFNRELLGDDDPRVADSLTDLAELLRAQGKLDEVRMKLSESQIRSATACC
L*
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mRNA from alignment at H-paniculata_contig16326:4930..5235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16326.3625.1 ID=mRNA_H-paniculata_contig16326.3625.1|Name=mRNA_H-paniculata_contig16326.3625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig16326:4930..5235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCTTTCTGTATTACAACAAAAATACTGCAAAAGGCAAACGGCGA
CCGCGATCCGGAGACGGTAGCATGTTTGTCCTGGATCGCGGAGACGCACC
AGAAGCAAGGACAGTACTTTGAAGCGGAGAAGATTCTTCTTCAGGTGGTC
GCTTTTAACCGAGAACTACTTGGTGACGATGATCCCCGGGTAGCCGACTC
CTTGACCGACCTGGCGGAGTTGCTTCGCGCCCAGGGGAAGCTGGACGAGG
TGAGGATGAAACTGAGTGAAAGCCAGATCAGGTCAGCAACTGCTTGCTGC
TTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16326:4930..5235-

>mRNA_H-paniculata_contig16326.3625.1 ID=mRNA_H-paniculata_contig16326.3625.1|Name=mRNA_H-paniculata_contig16326.3625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig16326:4930..5235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCTTTCTGTATTACAACAAAAATACTGCAAAAGGCAAACGGCGA
CCGCGATCCGGAGACGGTAGCATGTTTGTCCTGGATCGCGGAGACGCACC
AGAAGCAAGGACAGTACTTTGAAGCGGAGAAGATTCTTCTTCAGGTGGTC
GCTTTTAACCGAGAACTACTTGGTGACGATGATCCCCGGGTAGCCGACTC
CTTGACCGACCTGGCGGAGTTGCTTCGCGCCCAGGGGAAGCTGGACGAGG
TGAGGATGAAACTGAGTGAAAGCCAGATCAGGTCAGCAACTGCTTGCTGC
TTATGAATGCGTGCTTTCTGTATTACAACAAAAATACTGCAAAAGGCAAA
CGGCGACCGCGATCCGGAGACGGTAGCATGTTTGTCCTGGATCGCGGAGA
CGCACCAGAAGCAAGGACAGTACTTTGAAGCGGAGAAGATTCTTCTTCAG
GTGGTCGCTTTTAACCGAGAACTACTTGGTGACGATGATCCCCGGGTAGC
CGACTCCTTGACCGACCTGGCGGAGTTGCTTCGCGCCCAGGGGAAGCTGG
ACGAGGTGAGGATGAAACTGAGTGAAAGCCAGATCAGGTCAGCAACTGCT
TGCTGCTTATGA
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