mRNA_H-paniculata_contig1631.3617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1631.3617.1
Unique NamemRNA_H-paniculata_contig1631.3617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5JS68_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS68_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.780e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQRRK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  867 GHRRWVEKAGRDIVRIDRLGKTFLSQLWQRRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 930
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.830e-11
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G + W E+     V +D  G T L+ +WQ RK RL +G+RS  N APSS GRVV GPT  ACKT
Sbjct:  287 GHKRWVEKAGRDIVRIDRLGKTILNHLWQSRKERLAIGDRSSGNNAPSSRGRVVIGPTAKACKT 350
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.680e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  309 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAMACKT 372
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.050e-10
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = -3 
Query:   59 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT*SCPLPLLLLLRG 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT     P  +LL G
Sbjct:  634 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT-----PEYVLLPG 705
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.030e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  384 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 447
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.030e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  435 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.160e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  457 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 520
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.190e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  720 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5JPI9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.190e-10
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T  ACKT
Sbjct:  723 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTVKACKT 786
[Close]
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.020e-10
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = -3 
Query:   98 GGRNWPERVR---VEVDEEGDTCLSDIWQRRKGRLTVGNRSGRNKAPSSSGRVVDGPTTSACKT 280
            G R W E+     V +D  G T LS +WQ RK RL +G+RS  N APSS GRVV+G T   CKT
Sbjct:  200 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1631.3617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS68_9PHAE4.780e-1154.69Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5S2_9PHAE9.830e-1151.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE2.680e-1053.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE77_9PHAE3.050e-1049.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LRL5_9PHAE4.030e-1053.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE4.030e-1053.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD24_9PHAE4.160e-1053.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L1_9PHAE4.190e-1053.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JPI9_9PHAE4.190e-1053.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ0_9PHAE8.020e-1051.56Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1631contigH-paniculata_contig1631:4375..4683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929301.0452063-CDS-H-paniculata_contig1631:4374..46831622929301.0452063-CDS-H-paniculata_contig1631:4374..4683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1631 4375..4683 +
1691480806.867033-CDS-H-paniculata_contig1631:4374..46831691480806.867033-CDS-H-paniculata_contig1631:4374..4683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1631 4375..4683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1631.3617.1prot_H-paniculata_contig1631.3617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1631 4375..4683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1631.3617.1

>prot_H-paniculata_contig1631.3617.1 ID=prot_H-paniculata_contig1631.3617.1|Name=mRNA_H-paniculata_contig1631.3617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MECCSRARLGTASCCPLGLSHVTRGEGGGGMIMFCMPKLSDHRPRVLRRT
ALCSCPSDFRPSIALSYVAKCRSSMCHLPHLPQPSPFRANFYLLETVITS
ISQ
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mRNA from alignment at H-paniculata_contig1631:4375..4683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1631.3617.1 ID=mRNA_H-paniculata_contig1631.3617.1|Name=mRNA_H-paniculata_contig1631.3617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig1631:4375..4683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTGTTGCTCCAGGGCTCGGCTTGGGACGGCCAGTTGTTGTCCGCT
GGGTTTGTCCCACGTAACAAGAGGAGAAGGGGGAGGGGGCATGATCATGT
TTTGCATGCCGAAGTTGTCGGACCATCGACCACGCGTCCTGAGGAGGACG
GCGCTTTGTTCCTGCCCGAGCGATTTCCGACCGTCAATCGCCCTTTCCTA
CGTTGCCAAATGTCGCTCAAGCATGTGTCACCTTCCTCATCTACCTCAAC
CCTCACCCTTTCGGGCCAATTTCTACCTCCTTGAAACAGTCATAACTTCA
ATATCTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1631:4375..4683+

>mRNA_H-paniculata_contig1631.3617.1 ID=mRNA_H-paniculata_contig1631.3617.1|Name=mRNA_H-paniculata_contig1631.3617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1631:4375..4683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTGTTGCTCCAGGGCTCGGCTTGGGACGGCCAGTTGTTGTCCGCT
GGGTTTGTCCCACGTAACAAGAGGAGAAGGGGGAGGGGGCATGATCATGT
TTTGCATGCCGAAGTTGTCGGACCATCGACCACGCGTCCTGAGGAGGACG
GCGCTTTGTTCCTGCCCGAGCGATTTCCGACCGTCAATCGCCCTTTCCTA
CGTTGCCAAATGTCGCTCAAGCATGTGTCACCTTCCTCATCTACCTCAAC
CCTCACCCTTTCGGGCCAATTTCTACCTCCTTGAAACAGTCATAACTTCA
ATATCTCAAATGGAGTGTTGCTCCAGGGCTCGGCTTGGGACGGCCAGTTG
TTGTCCGCTGGGTTTGTCCCACGTAACAAGAGGAGAAGGGGGAGGGGGCA
TGATCATGTTTTGCATGCCGAAGTTGTCGGACCATCGACCACGCGTCCTG
AGGAGGACGGCGCTTTGTTCCTGCCCGAGCGATTTCCGACCGTCAATCGC
CCTTTCCTACGTTGCCAAATGTCGCTCAAGCATGTGTCACCTTCCTCATC
TACCTCAACCCTCACCCTTTCGGGCCAATTTCTACCTCCTTGAAACAGTC
ATAACTTCAATATCTCAA
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