mRNA_H-paniculata_contig16309.3615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16309.3615.1
Unique NamemRNA_H-paniculata_contig16309.3615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: L8GSN7_ACACA (Midasin family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSN7_ACACA)

HSP 1 Score: 54.7 bits (130), Expect = 8.830e-7
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVTVDPSR 184
            L E+GDV P++RHP+  +F     PT+  K +LP  LR  FT F  D +  V+  R
Sbjct:  964 LTEKGDVEPIKRHPNFRVFACMNPPTDIGKKNLPPGLRNRFTEFYVDELSNVEDLR 1019          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: A0A158R841_TAEAS (Midasin n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A158R841_TAEAS)

HSP 1 Score: 54.7 bits (130), Expect = 8.960e-7
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVTVDP 178
            L +RGD+ PV+RHPD  LF      T+  K DLPT LR  FT     R+  +DP
Sbjct:  622 LVDRGDLEPVKRHPDFHLFAAMNPSTDVGKRDLPTGLRNRFTEL---RVAELDP 672          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: UPI0006239004 (LOW QUALITY PROTEIN: midasin n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006239004)

HSP 1 Score: 54.7 bits (130), Expect = 8.960e-7
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVTVDPSRL 187
            L ERGD  PV+RHPD  +F      T+  K DLP  LR  FT F  D ++     RL
Sbjct:  844 LLERGDEEPVKRHPDFTIFACMNPATDVGKKDLPVGLRNRFTEFYIDELIQKPDLRL 900          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: A0A164Y7Z6_9CRUS (Midasin n=2 Tax=Daphnia TaxID=6668 RepID=A0A164Y7Z6_9CRUS)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-6
Identity = 25/51 (49.02%), Postives = 28/51 (54.90%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVT 169
            L ERGD  PV+RHPD  LF      T+  K  LPT LR  FT F  D I +
Sbjct:  822 LLERGDREPVKRHPDFRLFAAMNPATDVGKKQLPTGLRSRFTEFIVDEITS 872          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: A0A0N8DWL2_9CRUS (Midasin n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8DWL2_9CRUS)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-6
Identity = 25/51 (49.02%), Postives = 28/51 (54.90%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVT 169
            L ERGD  PV+RHPD  LF      T+  K  LPT LR  FT F  D I +
Sbjct:  822 LLERGDREPVKRHPDFRLFAAMNPATDVGKKQLPTGLRSRFTEFIVDEITS 872          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: UPI001651EBC8 (midasin n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001651EBC8)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-6
Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRI 163
            L ERGD++PV+RHPD  LF      T+  K DLP  +R  FT F  + +
Sbjct:  727 LTERGDIDPVKRHPDFRLFACMNPATDVGKKDLPAGIRNRFTEFFVEEL 775          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: A0A482W347_9CUCU (AAA 5 domain containing protein (Fragment) n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482W347_9CUCU)

HSP 1 Score: 53.5 bits (127), Expect = 2.260e-6
Identity = 24/49 (48.98%), Postives = 27/49 (55.10%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRI 163
            L ERGD  PV+RHPD  LF      T+  K DLP  LR  FT F  D +
Sbjct:  341 LLERGDKEPVKRHPDFTLFACMNPSTDVGKKDLPAGLRNRFTEFFVDEL 389          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: A0A158QCU3_HYMDI (Midasin n=11 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A158QCU3_HYMDI)

HSP 1 Score: 53.5 bits (127), Expect = 2.290e-6
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRIVTVDPS 181
            L +RGD+ PVRRHPD  LF      T+  K DLP  LR  FT     R+  ++PS
Sbjct:  621 LVDRGDLEPVRRHPDFHLFAAMNPSTDVGKRDLPMGLRNRFTEI---RVAELEPS 672          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: E9FYV2_DAPPU (Midasin n=3 Tax=Daphnia TaxID=6668 RepID=E9FYV2_DAPPU)

HSP 1 Score: 53.5 bits (127), Expect = 2.290e-6
Identity = 24/49 (48.98%), Postives = 27/49 (55.10%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRI 163
            L ERGD  P++RHPD  LF      T+  K  LPT LR  FT F  D I
Sbjct:  808 LLERGDREPIKRHPDFRLFAAMNPATDVGKKQLPTGLRSRFTEFVVDEI 856          
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Match: E9IJJ4_SOLIN (Uncharacterized protein (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9IJJ4_SOLIN)

HSP 1 Score: 53.1 bits (126), Expect = 3.100e-6
Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 2
Query:   17 LAERGDVNPVRRHPDIGLFTVGYKPTNTSKNDLPTALRRSFT*FCADRI 163
            L ERGD  PV+RHPD  +F      T+  K DLP  LR  FT F  D +
Sbjct:  746 LLERGDAEPVKRHPDFTIFACMNPATDVGKRDLPVGLRNRFTEFYIDEL 794          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16309.3615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GSN7_ACACA8.830e-741.07Midasin family protein n=1 Tax=Acanthamoeba castel... [more]
A0A158R841_TAEAS8.960e-746.30Midasin n=1 Tax=Taenia asiatica TaxID=60517 RepID=... [more]
UPI00062390048.960e-743.86LOW QUALITY PROTEIN: midasin n=1 Tax=Linepithema h... [more]
A0A164Y7Z6_9CRUS1.210e-649.02Midasin n=2 Tax=Daphnia TaxID=6668 RepID=A0A164Y7Z... [more]
A0A0N8DWL2_9CRUS1.220e-649.02Midasin n=2 Tax=Daphnia magna TaxID=35525 RepID=A0... [more]
UPI001651EBC81.660e-644.90midasin n=1 Tax=Aplysia californica TaxID=6500 Rep... [more]
A0A482W347_9CUCU2.260e-648.98AAA 5 domain containing protein (Fragment) n=1 Tax... [more]
A0A158QCU3_HYMDI2.290e-645.45Midasin n=11 Tax=Hymenolepis diminuta TaxID=6216 R... [more]
E9FYV2_DAPPU2.290e-648.98Midasin n=3 Tax=Daphnia TaxID=6668 RepID=E9FYV2_DA... [more]
E9IJJ4_SOLIN3.100e-646.94Uncharacterized protein (Fragment) n=1 Tax=Solenop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16309contigH-paniculata_contig16309:2546..2944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size245
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16309.3615.1prot_H-paniculata_contig16309.3615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16309 2546..2837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929300.7261207-CDS-H-paniculata_contig16309:2545..26551622929300.7261207-CDS-H-paniculata_contig16309:2545..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 2546..2655 -
1691480806.7747521-CDS-H-paniculata_contig16309:2545..26551691480806.7747521-CDS-H-paniculata_contig16309:2545..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 2546..2655 -
1622929300.743858-CDS-H-paniculata_contig16309:2809..28371622929300.743858-CDS-H-paniculata_contig16309:2809..2837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 2810..2837 -
1691480806.784338-CDS-H-paniculata_contig16309:2809..28371691480806.784338-CDS-H-paniculata_contig16309:2809..2837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 2810..2837 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929300.7569208-UTR-H-paniculata_contig16309:2837..29441622929300.7569208-UTR-H-paniculata_contig16309:2837..2944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16309 2838..2944 -
1691480806.794084-UTR-H-paniculata_contig16309:2837..29441691480806.794084-UTR-H-paniculata_contig16309:2837..2944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16309 2838..2944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16309.3615.1

>prot_H-paniculata_contig16309.3615.1 ID=prot_H-paniculata_contig16309.3615.1|Name=mRNA_H-paniculata_contig16309.3615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MTFLQPFAEVLHSFVLTESLQSTLRGLVRAVASSSYPVLLRGPTR*
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mRNA from alignment at H-paniculata_contig16309:2546..2944-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16309.3615.1 ID=mRNA_H-paniculata_contig16309.3615.1|Name=mRNA_H-paniculata_contig16309.3615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig16309:2546..2944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTGTTGGAGGAAGTTGGCTGAAAGAGGTGACGTAAATCCTGTCAGGC GCCATCCAGACATTGGGCTATTTACAGTGGGGTATAAGCCCACTAATACG TCCAAGAATGACCTTCCTACAGCCCTTCGCCGAAGGTGCGTGCAATTTAA GTCTTCAAAAGCACGTTTGAAATGTGTCGCTCGCGTCAACTTGTACGATA TTGAGCCATACTACTTGCGAGTCACTGAATCCATATATTTGCTTTGTGAC GATGTAATTTCCACCGCTGTTTTCGTCGCTGTATGTAAGTTTTACATAGT TTTGTGCTGACAGAATCGTTACAGTCGACCCTTCGCGGCTTGGTTAGAGC TGTTGCGTCCTCTTCGTATCCCGTGCTGCTTCGAGGCCCCACCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16309:2546..2944-

>mRNA_H-paniculata_contig16309.3615.1 ID=mRNA_H-paniculata_contig16309.3615.1|Name=mRNA_H-paniculata_contig16309.3615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig16309:2546..2944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTCCTACAGCCCTTCGCCGAAGATGACCTTCCTACAGCCCTTCG
CCGAAGTTTTACATAGTTTTGTGCTGACAGAATCGTTACAGTCGACCCTT
CGCGGCTTGGTTAGAGCTGTTGCGTCCTCTTCGTATCCCGTGCTGCTTCG
AGGCCCCACCAGGTAATTTTACATAGTTTTGTGCTGACAGAATCGTTACA
GTCGACCCTTCGCGGCTTGGTTAGAGCTGTTGCGTCCTCTTCGTATCCCG
TGCTGCTTCGAGGCCCCACCAGGTAA
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