mRNA_H-paniculata_contig1628.3602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Match: D8LJR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR9_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 9.450e-153 Identity = 303/619 (48.95%), Postives = 363/619 (58.64%), Query Frame = 2
Query: 143 MMFAAAIFYMSGWQLGR---------DHTVMQTNSHQFAP-------------GIDDWKPVNKIRSRKGILPQATA----------ASGEKVAEEGNRVRSDGVVSSSRDFFSIEDMLAVTGAVERYAASSKSTLAADKLATEQGKPMQGRYIVLESGNELANRLRGVLSGFFLGMLTDRVFVADITYQQDITRGLLSALFEGPGYQWDLSELSPQLGHQLAPNRA--PK-------------VVFDMYEDSFRTWVCDDVLASTQLS------TALVITLSTVVYPLPLLARNPTYASHAILAAGTVANLRSANVAKHPD-TVVGDSKAEQLEWEGFAGGGQRRIEALETLLTRAVLRPTAELRARAKDLHDLVRAKADAWGKMRGIKAPPRVVGLHLRTYFITAVSSAA-LEASLEEFASCAKGGR-TGFD---ETFYFVATDDAQTQKVAQKVWGDGCYFADFGLTGSFQDGIKSALVDLLVMGSFDDFVMTPHSSFSELGASLSYTWLLDYQDALRIVPHRPLIPIFTGINSFERRKIESLLDRRAAP----------------ARIEGGKAECRRLYAAGMSVVVARGKHLTSMFGAIEDAKCLQGRKE-IADV 1771
M AAAI Y+ GW R D T + + S A G W S G L Q T A A EG R+ G + S F S + AV GAVE YA +K TL AD++A +QG+P+QG+YIVL+SGNEL NRLRGV+SGFFLG+LTDRVFVADITYQ+D T+GLLSALFEGPGY+WDLS+LSP L LAPN+ P+ ++FDM ++ F WVC DV+ V+TLSTVVYPLPLLARNP YASH I A A K+P TVV GQR +EALETLLTR VLRPT ELR RA+ L D VR +A+ WG P R+VGLH+RTYF+ A+S+A LE +L+ F CA G G D TFYFVATD+A TQ A+KVWGDGCYF F L GS +GIK+A VDLLVMGSFDD+VMTPHSSFSELGA+LS+TWL D + ALR P+RP++P+F N FERRK+ SLLDRRA GK C R +AAGMSV VA G+ L SMF A+E A C++G+ IAD+
Sbjct: 1 MASAAAILYVCGWDSTRHAGEKKAAVDATAINSQSVGNAQWTAVVEGRDEPGGGSHPWAGKGPEGSFHGGLGQETRQPXXXXXXXQAENRPQAREG---RAAGAATPS-SFLSEGAVEAVVGAVESYADFAKRTLEADEVAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGVLTDRVFVADITYQKDGTQGLLSALFEGPGYEWDLSKLSPGLRGALAPNKKKPPRGKIRGGASGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGG--GAEGQKNPGGTVV----------------GQRGVEALETLLTRVVLRPTRELRERARGLADRVRERANEWGGXXXXGRPVRIVGLHVRTYFVKAISTATKLERNLQHFDDCAVAGSGDGADTGSSTFYFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPETALRTPPNRPIVPLFPQTNDFERRKVFSLLDRRAVEIFPSDDGQVVAAAGGAGXXSSGKGMCMRAHAAGMSVTVAIGRQLLSMFEAMEGAPCMKGKDTTIADL 597
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Match: A0A6H5L5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F2_9PHAE) HSP 1 Score: 333 bits (854), Expect = 1.170e-103 Identity = 207/412 (50.24%), Postives = 249/412 (60.44%), Query Frame = 2
Query: 668 WDLSELSPQLGHQLAPNRA--PK-------------VVFDMYEDSFRTWVCDDVLASTQLS------TALVITLSTVVYPLPLLARNPTYASHAILAAGTVANLRSANVAKHPDTVVGDSKAEQLEWEGFAGGGQRRIEALETLLTRAVLRPTAELRARAKDLHDLVRAKADAWGKMRGIKAPPRVVGLHLRTYFITAVSSAALEASLEEFASCAKGGRTGFD------ETFYFVATDDAQTQKVAQKVWGDGCYFADFGLTGSFQDGIKSALVDLLVMGSFDDFVMTPHSSFSELGASLSYTWLLDYQDALRIVPHRPLIPIFTGINSFERRKIESLLDRRA------------APARIEG----GKAECRRLYAAGMSVVVARGKHLTSMFGAIEDAKCLQGRKE-IADV 1771
WDLS+LSP L LAPN+ P+ ++FDM ++ F WVC DV+ V+TLSTVVYPLPLLARNP YASH I A +A V K+P G A GQR +EALETLLTR VLRPT ELR RA+ L D VR +A WG G P R+VGLH+RTYF+ A+S+A LE L+ F CA G TFYFVATD+A TQ A+KVW DGCYF F L GS +GIK+A VDLLVMGSFDD+VMTPHSSFSELGA+LS+TWL D + ALR P+RP++P+F N FERRK+ SLLDRRA A A G G+ C R +AAGMSV VA G+ L SMF AIE A C++G++ +AD+
Sbjct: 4 WDLSKLSPGLRGALAPNKKKPPRGKIRGGRSGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAVAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAG--WTAEVEKNP---------------GGAVVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERAKKWGGEGGKGGPVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSXXXXXXXXXXSTFYFVATDEANTQAAAKKVWEDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPEAALRTPPNRPIVPLFPQTNEFERRKVFSLLDRRAVEIFPSDGGEVVAAAGGAGAGSSGRGMCMRAHAAGMSVTVAIGRQLLSMFEAIEGAPCMKGKETTVADL 398
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Match: A0A6H5KKD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD8_9PHAE) HSP 1 Score: 143 bits (361), Expect = 7.160e-35 Identity = 94/204 (46.08%), Postives = 115/204 (56.37%), Query Frame = 2
Query: 143 MMFAAAIFYMSGWQLGRDH-----TVMQTNSHQFAPGIDDWKPVNKIRSRKGILPQATAASG------EKVAEE------------------GNRVRSDGVVSSSRDFFSIEDMLAVTGAVERYAASSKSTLAADKLATEQGKPMQGRYIVLESGNELANRLRGVLSGFFLGMLTDRVFVADITYQQDITRGLLSALFEGPGYQ 667
M AAAI Y+ GW R V T S+ + G W V + R G A G E + +E G R+ G + S F S + AV G VE YA ++ TL AD+LA +QG+P+QG+YIVL+SGNEL NRLRGV+SGFFLGMLTDRVFVADITYQ+D T+GLLSALFEGPGY+
Sbjct: 1 MASAAAILYVCGWDSTRHAGEKKVAVDATASNSQSVGDAQWAAVVEGRDEPGGGDHPWAGKGPEGSFHEGLGQETRQTPPGGGGGHAENRPRGREGRAAGDATPS-SFLSEGAVKAVVGTVESYADFARGTLEADELAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGMLTDRVFVADITYQKDGTQGLLSALFEGPGYE 203
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Match: X6MJI9_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MJI9_RETFI) HSP 1 Score: 62.4 bits (150), Expect = 4.940e-7 Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 2
Query: 1211 ALEASLEEFASCAKG---GRTGFDETFYFVATDDAQTQKVAQKVWGDG-CYFADFGLTGSFQDGIKSALVDLLVMGSFDDFVMTPHSSFSELGASL 1486
AL A E FA C + F + A D A+ Q A+ V+G YF F L GS GI A+VDL+ + SFD F+ TPHSS+SE+ + L
Sbjct: 13 ALRAEYEWFAHCGNQVVPRKYRNKPLFIYFAADTAKAQSFAESVFGKHRVYFRPFVLKGSTLQGIIDAVVDLVTVSSFDTFISTPHSSYSEMSSLL 108
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Match: X6NG83_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NG83_RETFI) HSP 1 Score: 58.9 bits (141), Expect = 5.120e-6 Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query: 1280 FYFVATDDAQTQKVAQKVWG-DGCYFADFGLTGSFQDGIKSALVDLLVMGSFDDFVMTPHSSFSELGASL 1486
F F A D AQ Q+ A +V+G D + F L G+ GI A+VDL+ + SFD F+ TPHSS+SE+ + L
Sbjct: 7 FIFFAGDTAQAQEFATQVFGKDRVSYRPFLLKGNSLQGIIDAVVDLVTVSSFDAFISTPHSSYSEMSSLL 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1628.3602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1628.3602.1 >prot_H-paniculata_contig1628.3602.1 ID=prot_H-paniculata_contig1628.3602.1|Name=mRNA_H-paniculata_contig1628.3602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=591bp MSFRWRSYSSPREDDEQRRKYARRSHSSSLRRSSDSGQSALRPCLAGMMFback to top mRNA from alignment at H-paniculata_contig1628:626..6084- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1628.3602.1 ID=mRNA_H-paniculata_contig1628.3602.1|Name=mRNA_H-paniculata_contig1628.3602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5459bp|location=Sequence derived from alignment at H-paniculata_contig1628:626..6084- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1628:626..6084- >mRNA_H-paniculata_contig1628.3602.1 ID=mRNA_H-paniculata_contig1628.3602.1|Name=mRNA_H-paniculata_contig1628.3602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3546bp|location=Sequence derived from alignment at H-paniculata_contig1628:626..6084- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |