prot_H-paniculata_contig1627.3600.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1627.3600.1
Unique Nameprot_H-paniculata_contig1627.3600.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length306
Homology
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BLAST of mRNA_H-paniculata_contig1627.3600.1 vs. uniprot
Match: D8LEL3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL3_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 3.190e-62
Identity = 177/287 (61.67%), Postives = 206/287 (71.78%), Query Frame = 0 
Query:    1 IDLPLPCTHAEVAETRSAASARAKWRAELRSSDEGLRPFSRMNRARTANLLLAREMRSRREVEKARNVSQADRGIDGHLASELYGLKVLDQAHHPRLQSIPLLSRAASGGGPSHRRGRREMTLVTNMLALVADNDHRVAAVNFQGQGLDDAWVTLLGSILEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATARSMASLLQSGCCSLTALNLSNTTP-PAVSNISDSVAKDEHLNGGIRAPGAAVLALALGASASGS-VKFLASLNLSFQR 285
            ID+PLP  H++V  TR+A SA  + R  L SS+E  RPFSR+NR +T +LL+ARE RSRREVEKARN S +DRGID  LA E+ GL  L+QA HPRLQ++PLLSR+AS  G    R RREM  +T+   LV D+DHR A V  QG+ LDDAW+ LLGS LE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +A LL+SG CSL ALNL+  TP PA    S S  +++  +  IRAPGAA LALAL      S V  L SLNL+FQR
Sbjct:   54 IDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQRSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQGRSRREMARITDAFGLVEDDDHRAAVVRVQGEALDDAWIALLGSTLENNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1627.3600.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEL3_ECTSI3.190e-6261.67Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 191..218
e-value: 0.0027
score: 26.9
coord: 163..190
e-value: 0.07
score: 22.2
NoneNo IPR availablePANTHERPTHR24107:SF15coord: 139..302
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 139..302
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 141..305
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 93..306
e-value: 3.0E-24
score: 87.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 190..207
e-value: 0.081
score: 13.0
coord: 162..185
e-value: 0.0013
score: 18.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1627contigH-paniculata_contig1627:14587..19096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1627.3600.1mRNA_H-paniculata_contig1627.3600.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1627 14587..19096 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1627.3600.1 ID=prot_H-paniculata_contig1627.3600.1|Name=mRNA_H-paniculata_contig1627.3600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
IDLPLPCTHAEVAETRSAASARAKWRAELRSSDEGLRPFSRMNRARTANL
LLAREMRSRREVEKARNVSQADRGIDGHLASELYGLKVLDQAHHPRLQSI
PLLSRAASGGGPSHRRGRREMTLVTNMLALVADNDHRVAAVNFQGQGLDD
AWVTLLGSILETNQTVTSLNLNNNSITSRGVELLARALRKNTTVKTLSLG
GNRLTDATARSMASLLQSGCCSLTALNLSNTTPPAVSNISDSVAKDEHLN
GGIRAPGAAVLALALGASASGSVKFLASLNLSFQRIWDAGAVALAGALGQ
PLCHLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt