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Homology
BLAST of mRNA_H-paniculata_contig1627.3600.1 vs. uniprot
Match: D8LEL3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL3_ECTSI) HSP 1 Score: 210 bits (534), Expect = 3.190e-62 Identity = 177/287 (61.67%), Postives = 206/287 (71.78%), Query Frame = 1
Query: 1 IDLPLPCTHAEVAETRSAASARAKWRAELRSSDEGLRPFSRMNRARTANLLLAREMRSRREVEKARNVSQADRGIDGHLASELYGLKVLDQAHHPRLQSIPLLSRAASGGGPSHRRGRREMTLVTNMLALVADNDHRVAAVNFQGQGLDDAWVTLLGSILEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATARSMASLLQSGCCSLTALNLSNTTP-PAVSNISDSVAKDEHLNGGIRAPGAAVLALALGASASGS-VKFLASLNLSFQR 855
ID+PLP H++V TR+A SA + R L SS+E RPFSR+NR +T +LL+ARE RSRREVEKARN S +DRGID LA E+ GL L+QA HPRLQ++PLLSR+AS G R RREM +T+ LV D+DHR A V QG+ LDDAW+ LLGS LE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +A LL+SG CSL ALNL+ TP PA S S +++ + IRAPGAA LALAL S V L SLNL+FQR
Sbjct: 54 IDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQRSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQGRSRREMARITDAFGLVEDDDHRAAVVRVQGEALDDAWIALLGSTLENNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 340
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-23_002580.1 |
| Exons | 6 |
| Model size | 918 |
| Cds size | 918 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1627.3600.1 >prot_H-paniculata_contig1627.3600.1 ID=prot_H-paniculata_contig1627.3600.1|Name=mRNA_H-paniculata_contig1627.3600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
IDLPLPCTHAEVAETRSAASARAKWRAELRSSDEGLRPFSRMNRARTANL
LLAREMRSRREVEKARNVSQADRGIDGHLASELYGLKVLDQAHHPRLQSI
PLLSRAASGGGPSHRRGRREMTLVTNMLALVADNDHRVAAVNFQGQGLDD
AWVTLLGSILETNQTVTSLNLNNNSITSRGVELLARALRKNTTVKTLSLG
GNRLTDATARSMASLLQSGCCSLTALNLSNTTPPAVSNISDSVAKDEHLN
GGIRAPGAAVLALALGASASGSVKFLASLNLSFQRIWDAGAVALAGALGQ
PLCHLE back to topmRNA from alignment at H-paniculata_contig1627:14587..19096+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1627.3600.1 ID=mRNA_H-paniculata_contig1627.3600.1|Name=mRNA_H-paniculata_contig1627.3600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4510bp|location=Sequence derived from alignment at H-paniculata_contig1627:14587..19096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGATCTTCCATTGCCGTGCACTCATGCGGAGGTGGCGGAAACTCGATC
CGCTGCCTCGGCGCGTGCCAAATGGCGCGCCGAACTTCGATCATCCGACG
TGAGTTTTGAACCTGCAGTACGAAGTTTCTCTCGTACCTTGTGCCACAAA
GGTATGATGCAAATATTTATAGTATACACCACACTGCCAAGGTAAATTTC
AAAACCCACGAGGCACGCTGTAATTTCCAAGACACCCGCGATTATCAGCA
CAACTCTGATGTGTGCGATGTCTTTACACGGTGGATTTCGATGATGCATC
TTCTACCTCGTATCCAACATTTATATGGGCAGCCTCTCTACCTACCCCAC
TCAAGTACAGGAGGGCCTGCGACCTTTCTCACGAATGAACCGCGCAAGAA
CGGCAAATCTCCTGCTAGCGAGGGAGATGAGAAGCCGCCGCGAGGTCGAA
AAGGCACGGAACGTTTCTCAGGCTGACCGAGGGATCGACGGTCACCTAGC
GTCAGAGTTGTATGGTCTCAAGGTAAACAGAAATGTTCCGCCTTTTTTTA
GCAGCTCTTGAAGAATACGGATGAATAGTGGATAACAGCGTTTTAAAGTT
GGCGTGTATATGCTCGTACGTGTTTTTATTGTATGTTATGTTCAAAAGAC
AGTCGTCTAATTATGTCATCAGTAATATGATGAGTCTTATCCACAAGATG
GCGTAGTGAATGTTCCCATTTAGTCCTACACACATGGCCAGAGAGGTACC
TTGTTGCAGATATTGCAATGTTCACGCTGTGATAAGGTTGGCAGTGTTTA
CGCAATGTATTAGAGCGTTGTGGTGAGGTTGACAATGTACATACAACGCC
CTAATACACAGTATGCACATTGGGAAACTCCCGCAACGTGGGGACGTCGT
AATACCCGCAACAAGGTACTCACAAGATGCCCTCTGGCCGCGTGTGTAGA
GTTTGTTGTGTAAGCTAGTTTTATTTACATTCCTATCTCGAGGACCAACG
TAAGAATTGATATCAAGGCAGGAGTCAGGAGAAGTTGCGATTTAAACCAA
AGCGCGAACATCACAAGCGCTAGCATCTGAGTTGGGTTAAATTGAGAATT
AACGTTGTATTGCCGGTGTTTTGGAGTTCGCTGACCATTCAAAACGGTCG
CATATTTCGTTTGCCTATGTTTTGTTGTTTGTGGAAATAATAGGCCCCAT
AGTCTGCACATCAGCGCGATATCAGCATATCACCTGTATGGTGAATGTTT
TCATATTACGATTCGACAAAATTACATTTGTAACCTTCATTAATTGACTA
CAAAGAGTTGCGCCGTCGGACAAAAGCATCTTACCGTAGAAAGATAAGTG
TAGGTTCGGTGGTAAGCTAGGAGAGTACGGGAGGTCGGACTACCAGGCAA
CTAATCAATTACCCTGGTGCTTTGTTCCAGACGTCTTGGTCCCGGACGTG
TGCATTCTACCGAGAGGGTAAGCGCGTGGTATCCCCACCTCGCCCACTCT
CCCTGGGATCCGCATTTCCCAACTTTCTATGCGGCCAAGCGAAACGCTAT
TTGTACCATACTAAGTACTTCTCTTCCTTGACTTTTACCCAAACACGGGA
GCTTAACAGTCGAATCATCCTACGGTAGGGGAGGGGTCAATTGGTTAATT
TGTCTGCCGCTTAGCAAAAGCGGTGCAAAAATAACGCGAATCAAAATTAT
GTCAATGCACGTGCTTGTGCATCCCGACAGGTGCATAGTCCACGAATTGA
ATGGGATGTCTGTTCAAGGGAAGGCAACACATGCAAAAAAATAAGAATGA
AAATGCCTGACCCGCTTCTCAAAGCGGCTCCTTCGTTAAACAAGGCGGCT
CAAATACCCCCCCCCTACAGCAGGATGACTCCGTCACTACGCGCCGACTC
TCCGTGTCTCTACCGATACAGCAACCCACACAACAGTACCTTCCCTCCTT
TGTTTCCTCAGCATGAGTACATGTTGGGTGGAAGTAATAGTTTTCTAGGC
TCTGAGAGTTTGTGTCTACAATTGGCCCTACCCTACGAATGGCTAGCAAC
TACCTCGGCAGGTAACCCGAAGTGCAAGCAAATAAAAACACACAGGTACT
CGATCAGGCCCATCACCCCCGCCTTCAGTCCATACCCCTCTTGTCTCGTG
CGGCCTCGGGTGGGGGACCCTCCCATCGGCGGGGCCGACGCGAAATGACT
CTCGTCACGAACATGCTGGCGTTGGTCGCCGACAACGACCACCGGGTAGC
GGCGGTCAACTTCCAGGGGCAGGGCCTCGACGATGCTTGGGTTACTCTGC
TGGGAAGCATTTTGGAGACTAACCAAACCGTGACGAGCTTGAACCTTAAC
AAGTGAGGACGGCATAAATGATAGCTGTGGAGGAATGGGAAGCAGCAGAT
AATATGCTCACAACAAAGACCTCAAGCCACGCAATATTTGTACCTGAATT
TATTCGAACGCCTTCCCGCATCGTGTGGTAAATGGCGTAGTTTTGCTTCG
GTTATTTTTTACCACTCGCGGAGTACGATTTCAGGATGATTGCTCGCTTC
ACTTCGGCAGTTTCTTTGTTCCTTCTAAAGGGGTTTGCCTTCTCAAGGTG
ACCCATCCTCCTTCTCTACTCTGCCACGCTACCGTCGTATACAGGTATAC
AACATTCGTATTTTGTTTTTACGGAGACGCAATCGTGTGGTAGATTGATC
CCAGCAGAAACCGCGCAATCAACAACTAGGACGAGCTAGCTAGTTTTCGA
GTTTGCCGAATTTCAACAACAGTATATCTCATTTTCTCCTGTATAATATT
TTCCTCCGAATTGCTTTCTATAGGATGTCCTTACTTAAAAAGAACAAGGT
TCGCCTTTGATTGTTCGAATACGCCGCATACCTCGCGTCCTGCAACGCAG
CAACTCCATAACGAGCAGAGGGGTGGAGCTACTGGCCCGGGCGCTCAGAA
AAAATACCACTGTAAAGACTCTATCGCTTGGAGGAAACCGCCTCACCGAC
GCCACCGCCAGAAGTATGGCAAGTCTCCTGCAAAGCGGGTGTTGCTCGCT
GACAGCATTAAACCTCTCGAACACAACGCCGCCTGCCGTGAGGTCAGATC
GTCGGAGTATGCGCGGAAGGGGGGAATATCGAAGTCGCCCCAACAAATAT
AAGCACTGTTAGAGACAGCGAAATGACAGGAGATTGCTCGGAGATCGCTC
GGAACTGTTTTTAAAAACAAGTTGGCGATGTGACCCCAATCGATCAATCA
AATAGTGTAACGAACATATTTGGATTCAAACGCTGGCGTCAAGATTTTGG
GGGGCGCGTACACAGAAATAGCCAGTGGTCATCACACTGGCAATGAACCT
GAGTACTGACTACACTGACTGCATTTTTTATCATGTGATGAGTGTACAAG
TAAGCAAGGATATATTGTTCACCACATTTGGTGTGTAGGAGCTAGTACTC
CGATCGGGCTTTAGAGCCGTCTACATTGCATAAGACTCGCGTGGGTTGGA
TTCGATTCGTGGCCCAGAGTGTCGCATTGGCGGAGATTATCGTGGCGACG
AAATTTTCACTCACGGTTCAAGACGTACAAACGGTTAGTCCTATGTTGCC
TGCTTGCCCTTTGCAAACATTTCATTATCACCATGATCTCCGCCAATACA
ACGCTCTAGGCCACGAATCCAACCTACGAAAGCCCTGTGCAATTTAGGTA
ATCGAGGGGAAGTCCATGACGTACGGCGCTGTTATCGTCAGACACCCCTC
ACGTGAATTCTCCCCGCATGCACAAAGGTCACTCTCCCTTCCCAGCAGTG
GATACGTTTGTGATATCGCAAGCCCCATTCTGCGAGGGTCACAAGTATAG
TGTTAAACATGTCAGGCAACGCTACCCACATATACTCCGCCGGGAACACG
CGTTGGCCTCCGAAGTGATTGAAGAGAAGTCAACGAGGTTCTCCCCTCAT
TTTCTTACCCCTCTACCCCCTCCCCCCAGTAATATCAGCGATTCTGTGGC
CAAAGACGAGCATCTAAATGGGGGTATCCGAGCACCAGGAGCGGCGGTCC
TTGCATTGGCGTTGGGTGCCTCTGCGTCGGGCAGTGTCAAATTTCTTGCG
AGCCTTAACTTATCTTTTCAGAGGTGAGGCGGGACAATGTCGCAAGGCCA
ACGAACAGCTTCAAGCGAGTCCGTAACCTTTTGCTTTGAAGAAAGTGAGT
GAGTACTGAATGTTGGGTCACTCAGGCTCGAGTGGGATTATGCAATTATG
TACTAGCTTTAAGTGCAAAGGGAAACTCAGGCAGGTACCACTAAGTAGCC
CACCCAATCATCCGCTACTAATCAAGTGTCTCAGGAAACCGTTTGTCACA
ATCCTTCATCATCTTTGTCCTCGCCTCTTCCCAGTCCCACGTCAATCGTT
GGCCTTGTTGTTCCTACATGACCCTCTCGCTACCGTCACAAACTAGGATT
TGGGATGCAGGCGCTGTCGCTCTTGCAGGAGCACTGGGGCAGCCTTTGTG
TCATCTGGAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1627:14587..19096+ >mRNA_H-paniculata_contig1627.3600.1 ID=mRNA_H-paniculata_contig1627.3600.1|Name=mRNA_H-paniculata_contig1627.3600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig1627:14587..19096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGATCTTCCATTGCCGTGCACTCATGCGGAGGTGGCGGAAACTCGATC
CGCTGCCTCGGCGCGTGCCAAATGGCGCGCCGAACTTCGATCATCCGACA
TAGATCTTCCATTGCCGTGCACTCATGCGGAGGTGGCGGAAACTCGATCC
GCTGCCTCGGCGCGTGCCAAATGGCGCGCCGAACTTCGATCATCCGACGA
GGGCCTGCGACCTTTCTCACGAATGAACCGCGCAAGAACGGCAAATCTCC
TGCTAGCGAGGGAGATGAGAAGCCGCCGCGAGGTCGAAAAGGCACGGAAC
GTTTCTCAGGCTGACCGAGGGATCGACGGTCACCTAGCGTCAGAGTTGTA
TGGTCTCAAGGAGGGCCTGCGACCTTTCTCACGAATGAACCGCGCAAGAA
CGGCAAATCTCCTGCTAGCGAGGGAGATGAGAAGCCGCCGCGAGGTCGAA
AAGGCACGGAACGTTTCTCAGGCTGACCGAGGGATCGACGGTCACCTAGC
GTCAGAGTTGTATGGTCTCAAGGTACTCGATCAGGCCCATCACCCCCGCC
TTCAGTCCATACCCCTCTTGTCTCGTGCGGCCTCGGGTGGGGGACCCTCC
CATCGGCGGGGCCGACGCGAAATGACTCTCGTCACGAACATGCTGGCGTT
GGTCGCCGACAACGACCACCGGGTAGCGGCGGTCAACTTCCAGGGGCAGG
GCCTCGACGATGCTTGGGTTACTCTGCTGGGAAGCATTTTGGAGACTAAC
CAAACCGTGACGAGCTTGAACCTTAACAAGTACTCGATCAGGCCCATCAC
CCCCGCCTTCAGTCCATACCCCTCTTGTCTCGTGCGGCCTCGGGTGGGGG
ACCCTCCCATCGGCGGGGCCGACGCGAAATGACTCTCGTCACGAACATGC
TGGCGTTGGTCGCCGACAACGACCACCGGGTAGCGGCGGTCAACTTCCAG
GGGCAGGGCCTCGACGATGCTTGGGTTACTCTGCTGGGAAGCATTTTGGA
GACTAACCAAACCGTGACGAGCTTGAACCTTAACAACAACTCCATAACGA
GCAGAGGGGTGGAGCTACTGGCCCGGGCGCTCAGAAAAAATACCACTGTA
AAGACTCTATCGCTTGGAGGAAACCGCCTCACCGACGCCACCGCCAGAAG
TATGGCAAGTCTCCTGCAAAGCGGGTGTTGCTCGCTGACAGCATTAAACC
TCTCGAACACAACGCCGCCTGCCGTGAGCAACTCCATAACGAGCAGAGGG
GTGGAGCTACTGGCCCGGGCGCTCAGAAAAAATACCACTGTAAAGACTCT
ATCGCTTGGAGGAAACCGCCTCACCGACGCCACCGCCAGAAGTATGGCAA
GTCTCCTGCAAAGCGGGTGTTGCTCGCTGACAGCATTAAACCTCTCGAAC
ACAACGCCGCCTGCCGTGAGTAATATCAGCGATTCTGTGGCCAAAGACGA
GCATCTAAATGGGGGTATCCGAGCACCAGGAGCGGCGGTCCTTGCATTGG
CGTTGGGTGCCTCTGCGTCGGGCAGTGTCAAATTTCTTGCGAGCCTTAAC
TTATCTTTTCAGAGTAATATCAGCGATTCTGTGGCCAAAGACGAGCATCT
AAATGGGGGTATCCGAGCACCAGGAGCGGCGGTCCTTGCATTGGCGTTGG
GTGCCTCTGCGTCGGGCAGTGTCAAATTTCTTGCGAGCCTTAACTTATCT
TTTCAGAGGATTTGGGATGCAGGCGCTGTCGCTCTTGCAGGAGCACTGGG
GCAGCCTTTGTGTCATCTGGAAGATTTGGGATGCAGGCGCTGTCGCTCTT
GCAGGAGCACTGGGGCAGCCTTTGTGTCATCTGGAA back to top
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