mRNA_H-paniculata_contig16262.3598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16262.3598.1
Unique NamemRNA_H-paniculata_contig16262.3598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16262.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16262contigH-paniculata_contig16262:1797..2604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.885105-CDS-H-paniculata_contig16262:1796..18551622929297.885105-CDS-H-paniculata_contig16262:1796..1855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16262 1797..1855 +
1691480805.5809813-CDS-H-paniculata_contig16262:1796..18551691480805.5809813-CDS-H-paniculata_contig16262:1796..1855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16262 1797..1855 +
1622929297.8977041-CDS-H-paniculata_contig16262:2479..26031622929297.8977041-CDS-H-paniculata_contig16262:2479..2603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16262 2480..2603 +
1691480805.5891078-CDS-H-paniculata_contig16262:2479..26031691480805.5891078-CDS-H-paniculata_contig16262:2479..2603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16262 2480..2603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16262.3598.1prot_H-paniculata_contig16262.3598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16262 1797..2603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16262.3598.1

>prot_H-paniculata_contig16262.3598.1 ID=prot_H-paniculata_contig16262.3598.1|Name=mRNA_H-paniculata_contig16262.3598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
EAASKALQEEIEEQQQAALRASTSSGRRSSHTNGTSTSARSKLSSTGGIT
IRSPSPQQVSR
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mRNA from alignment at H-paniculata_contig16262:1797..2604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16262.3598.1 ID=mRNA_H-paniculata_contig16262.3598.1|Name=mRNA_H-paniculata_contig16262.3598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at H-paniculata_contig16262:1797..2604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCAGCCAGCAAAGCGTTGCAGGAAGAGATCGAAGAGCAACAACAGGC
TGCTCTCAGGTGCGCTACCACCAGCTCCCTTGTAAACATATATTTACATT
CTACACAGTATTACTAGTACTAGTAGTAGAGCCGCGAGTACGCCTGTGGC
CAGCTGCACTCCCTGCTTTGTCTTGGACTAACTCGCGTACAACAGCTCAG
GTTGTTCCCTCGAAAATATTTCATGAGAAGAAGTTGCTTGAATCTAGCTA
TGGAATTGGGAAGCTGTTCCAAAACGATGACGATAACGGTGACTACCTTA
CTGTATCCATGAATGAGAATTGCGATAACCCCCCCCTTCCCGGTGTAAGA
GAAAGGGACGAGAACTCATGGAAATTGAAGGGTGCGATAGAGAAACCCTG
TAATCCCGAGATTACGAAACGAATGCAATAGCGGTGCCAGGGGATGGAAA
ATGACCTGAAATGGCGAGGGCTAAGGAAAATAGGATAGGTGACACCTTTT
CGAGTCACCTTTAGCAACCTAAGGAAGACTGATTGTTCGCCATAGATTGC
TCTGATAGGAACAGGCTTTCGTCTCCTCTCGAGTATGCGTGGTCAATGGT
CTAGTAACTAAGGCGCACAAGACAAATATAACCCCCCCCCCCAACCCCCC
GTCATCCAATCGCCGCTACGCGCTAACAAAAAGAGCTTCCACTTCATCGG
GTCGCCGGTCGTCTCACACCAACGGGACATCAACAAGCGCGCGGTCAAAA
TTGTCATCCACTGGAGGCATTACGATTAGATCTCCCTCTCCGCAACAAGT
ATCCCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig16262:1797..2604+

>mRNA_H-paniculata_contig16262.3598.1 ID=mRNA_H-paniculata_contig16262.3598.1|Name=mRNA_H-paniculata_contig16262.3598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig16262:1797..2604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCAGCCAGCAAAGCGTTGCAGGAAGAGATCGAAGAGCAACAACAGGC
TGCTCTCAGGAGGCAGCCAGCAAAGCGTTGCAGGAAGAGATCGAAGAGCA
ACAACAGGCTGCTCTCAGAGCTTCCACTTCATCGGGTCGCCGGTCGTCTC
ACACCAACGGGACATCAACAAGCGCGCGGTCAAAATTGTCATCCACTGGA
GGCATTACGATTAGATCTCCCTCTCCGCAACAAGTATCCCGCAGCTTCCA
CTTCATCGGGTCGCCGGTCGTCTCACACCAACGGGACATCAACAAGCGCG
CGGTCAAAATTGTCATCCACTGGAGGCATTACGATTAGATCTCCCTCTCC
GCAACAAGTATCCCGC
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