mRNA_H-paniculata_contig16238.3588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16238.3588.1
Unique NamemRNA_H-paniculata_contig16238.3588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16238.3588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16238contigH-paniculata_contig16238:558..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size702
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.8110886-UTR-H-paniculata_contig16238:557..5581622929296.8110886-UTR-H-paniculata_contig16238:557..558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16238 558..558 +
1691480805.0934422-UTR-H-paniculata_contig16238:557..5581691480805.0934422-UTR-H-paniculata_contig16238:557..558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16238 558..558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.8253033-CDS-H-paniculata_contig16238:558..12601622929296.8253033-CDS-H-paniculata_contig16238:558..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16238 559..1260 +
1691480805.1014538-CDS-H-paniculata_contig16238:558..12601691480805.1014538-CDS-H-paniculata_contig16238:558..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16238 559..1260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16238.3588.1prot_H-paniculata_contig16238.3588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16238 559..1260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16238.3588.1

>prot_H-paniculata_contig16238.3588.1 ID=prot_H-paniculata_contig16238.3588.1|Name=mRNA_H-paniculata_contig16238.3588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MFYCVSQMGDSTLPLTNKNTSRPCTRAGSAPLRRGRTKSMRLWAMAVTPR
RSRVPHSRWAEVEMATETRRSRPTPAQAGEAPWGAEGRAGVLPATALTAA
SEESVSAQESVVLTAEARVEMKGPAPVSGDASRVTGRLSDCERGSTGIRE
RVLPERKKMAEVTPTKAIDTMAEQVDTEKVMKAARTAMAAAVTEAAKSPS
TLGPEGQGEMTVASPLRADAVLKMNEAVKRGECE
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mRNA from alignment at H-paniculata_contig16238:558..1260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16238.3588.1 ID=mRNA_H-paniculata_contig16238.3588.1|Name=mRNA_H-paniculata_contig16238.3588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig16238:558..1260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGTTCTACTGCGTCTCGCAAATGGGAGACTCTACCTTGCCCCTCACGA
ACAAGAACACCTCGCGGCCTTGCACCCGGGCTGGGAGCGCACCCTTGCGC
AGGGGGCGCACGAAGTCCATGCGACTCTGGGCAATGGCAGTGACCCCTCG
CCGTTCCCGGGTGCCCCATTCCAGATGGGCGGAAGTAGAGATGGCAACGG
AAACGAGGAGATCGAGGCCGACGCCGGCACAGGCGGGAGAGGCGCCGTGG
GGAGCGGAGGGGAGAGCGGGAGTGCTGCCGGCAACGGCGCTGACGGCGGC
GTCGGAAGAGTCAGTGTCGGCACAGGAATCGGTAGTCCTCACAGCGGAAG
CGCGGGTAGAGATGAAGGGGCCGGCCCCAGTGAGTGGGGACGCATCACGG
GTAACGGGGCGGTTGTCGGACTGTGAGAGAGGGAGCACGGGGATACGAGA
GCGTGTGCTACCGGAGAGGAAGAAAATGGCGGAGGTAACACCCACGAAGG
CGATAGATACCATGGCGGAGCAGGTGGACACAGAGAAGGTGATGAAGGCA
GCAAGGACGGCAATGGCGGCAGCGGTGACGGAGGCAGCGAAGTCCCCGTC
AACCCTGGGACCGGAGGGGCAAGGGGAGATGACGGTGGCGTCGCCATTGA
GGGCGGACGCCGTGTTGAAAATGAACGAGGCGGTGAAGCGGGGGGAGTGC
GAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16238:558..1260+

>mRNA_H-paniculata_contig16238.3588.1 ID=mRNA_H-paniculata_contig16238.3588.1|Name=mRNA_H-paniculata_contig16238.3588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig16238:558..1260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTACTGCGTCTCGCAAATGGGAGACTCTACCTTGCCCCTCACGAA
CAAGAACACCTCGCGGCCTTGCACCCGGGCTGGGAGCGCACCCTTGCGCA
GGGGGCGCACGAAGTCCATGCGACTCTGGGCAATGGCAGTGACCCCTCGC
CGTTCCCGGGTGCCCCATTCCAGATGGGCGGAAGTAGAGATGGCAACGGA
AACGAGGAGATCGAGGCCGACGCCGGCACAGGCGGGAGAGGCGCCGTGGG
GAGCGGAGGGGAGAGCGGGAGTGCTGCCGGCAACGGCGCTGACGGCGGCG
TCGGAAGAGTCAGTGTCGGCACAGGAATCGGTAGTCCTCACAGCGGAAGC
GCGGGTAGAGATGAAGGGGCCGGCCCCAGTGAGTGGGGACGCATCACGGG
TAACGGGGCGGTTGTCGGACTGTGAGAGAGGGAGCACGGGGATACGAGAG
CGTGTGCTACCGGAGAGGAAGAAAATGGCGGAGGTAACACCCACGAAGGC
GATAGATACCATGGCGGAGCAGGTGGACACAGAGAAGGTGATGAAGGCAG
CAAGGACGGCAATGGCGGCAGCGGTGACGGAGGCAGCGAAGTCCCCGTCA
ACCCTGGGACCGGAGGGGCAAGGGGAGATGACGGTGGCGTCGCCATTGAG
GGCGGACGCCGTGTTGAAAATGAACGAGGCGGTGAAGCGGGGGGAGTGCG
AAATGTTCTACTGCGTCTCGCAAATGGGAGACTCTACCTTGCCCCTCACG
AACAAGAACACCTCGCGGCCTTGCACCCGGGCTGGGAGCGCACCCTTGCG
CAGGGGGCGCACGAAGTCCATGCGACTCTGGGCAATGGCAGTGACCCCTC
GCCGTTCCCGGGTGCCCCATTCCAGATGGGCGGAAGTAGAGATGGCAACG
GAAACGAGGAGATCGAGGCCGACGCCGGCACAGGCGGGAGAGGCGCCGTG
GGGAGCGGAGGGGAGAGCGGGAGTGCTGCCGGCAACGGCGCTGACGGCGG
CGTCGGAAGAGTCAGTGTCGGCACAGGAATCGGTAGTCCTCACAGCGGAA
GCGCGGGTAGAGATGAAGGGGCCGGCCCCAGTGAGTGGGGACGCATCACG
GGTAACGGGGCGGTTGTCGGACTGTGAGAGAGGGAGCACGGGGATACGAG
AGCGTGTGCTACCGGAGAGGAAGAAAATGGCGGAGGTAACACCCACGAAG
GCGATAGATACCATGGCGGAGCAGGTGGACACAGAGAAGGTGATGAAGGC
AGCAAGGACGGCAATGGCGGCAGCGGTGACGGAGGCAGCGAAGTCCCCGT
CAACCCTGGGACCGGAGGGGCAAGGGGAGATGACGGTGGCGTCGCCATTG
AGGGCGGACGCCGTGTTGAAAATGAACGAGGCGGTGAAGCGGGGGGAGTG
CGAA
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