mRNA_H-paniculata_contig16232.3586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16232.3586.1
Unique NamemRNA_H-paniculata_contig16232.3586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16232.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16232contigH-paniculata_contig16232:2863..5311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2449
Cds size1629
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16232.3586.1prot_H-paniculata_contig16232.3586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16232 3047..4675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.631679-UTR-H-paniculata_contig16232:2862..30461622929296.631679-UTR-H-paniculata_contig16232:2862..3046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16232 2863..3046 +
1691480805.0493762-UTR-H-paniculata_contig16232:2862..30461691480805.0493762-UTR-H-paniculata_contig16232:2862..3046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16232 2863..3046 +
1622929296.6647272-UTR-H-paniculata_contig16232:4675..53111622929296.6647272-UTR-H-paniculata_contig16232:4675..5311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16232 4676..5311 +
1691480805.0691633-UTR-H-paniculata_contig16232:4675..53111691480805.0691633-UTR-H-paniculata_contig16232:4675..5311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16232 4676..5311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.6476047-CDS-H-paniculata_contig16232:3046..46751622929296.6476047-CDS-H-paniculata_contig16232:3046..4675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16232 3047..4675 +
1691480805.0615003-CDS-H-paniculata_contig16232:3046..46751691480805.0615003-CDS-H-paniculata_contig16232:3046..4675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16232 3047..4675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16232.3586.1

>prot_H-paniculata_contig16232.3586.1 ID=prot_H-paniculata_contig16232.3586.1|Name=mRNA_H-paniculata_contig16232.3586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=543bp
MSCKQGTCSHEGYSTHSSYGVVGTKKREFCARRAEDGMVHVLNKKCSHQG
CSTRSSYGVAGTKKPEYCAQHAEHGMVDVLNKKCSHQGCSTHPSYGVAGT
KKAEFCARHAKDGMVNVVNKTCSHQDCFLHPSYGVVGTKKAEVCARHAED
GMVNVLRKKCSHQGCSTHPSYGVVGTKKAEYCARHARDGMVNVVSKRCSH
HGCFAHPSYGVAGTKKAEYCARHAGDGMVNVVSKRCSHHDCFAHPSYGVA
GTIKAKFCVQHAKDGMVHVVKKKCSYWGCSTRPSYGVAGTNKTEVCVRHA
EDGMVNLLRKKCAHQGCSTRPSHGVAGTKKKEFCPRHAEDGMVSVLSKKC
SHRGCFLHPSYGIAGTKKREFCARHARDGMVNLSKKCSLKGCSAQASYGM
AGTRKANFCVQHAKDGMVDVKEGKSTSRYRRLINQSSPSQVKVVKVDVAS
QDVDGHGEYFGTVGKGRKRNSAPIIPSHSDNSNSREIRGAKRARMSDRTS
CSEQLAFRTSSADMSSLEHGATVKTEVAVSPRPVPDLVLHQR*
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mRNA from alignment at H-paniculata_contig16232:2863..5311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16232.3586.1 ID=mRNA_H-paniculata_contig16232.3586.1|Name=mRNA_H-paniculata_contig16232.3586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2449bp|location=Sequence derived from alignment at H-paniculata_contig16232:2863..5311+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACTAATTTTGGAAGGGATCACGACGGTGCTCGGTAGCGAAGTGTTG
TGTTATTGCAACGAGATCTCTATCTCTACAGGAGGATACAGTGCGGCAGG
CACGGAGGTTGCTCGAGTCACGCTCGGAGCTCCTGTCCTGAGGGATACTT
GAGAGGCGAAGTTGTGTTTTGGAATTGGAAGACTATGTCATGCAAACAGG
GAACGTGTTCTCACGAGGGCTACTCTACACATTCGTCGTATGGGGTGGTG
GGCACCAAAAAGAGAGAATTCTGTGCGAGACGCGCCGAAGACGGGATGGT
ACACGTGCTGAACAAGAAGTGCTCCCATCAGGGCTGCTCTACACGGTCGT
CGTATGGGGTGGCGGGCACCAAGAAGCCAGAGTATTGTGCGCAGCATGCC
GAACACGGGATGGTGGACGTGCTGAACAAGAAGTGCTCCCATCAAGGTTG
CTCCACACACCCGTCATATGGGGTGGCGGGCACGAAGAAGGCAGAATTTT
GTGCGAGACATGCCAAAGACGGGATGGTGAACGTGGTGAATAAAACGTGC
TCCCACCAGGACTGCTTTTTACATCCGTCGTATGGGGTGGTGGGCACCAA
GAAGGCAGAGGTTTGTGCGCGACATGCTGAAGATGGGATGGTGAATGTGC
TGAGGAAGAAGTGCTCCCATCAGGGCTGCTCTACACACCCGTCATATGGG
GTGGTGGGCACCAAGAAGGCAGAGTATTGTGCGCGGCATGCCAGGGACGG
GATGGTGAACGTAGTGAGTAAGAGGTGCTCCCATCATGGTTGCTTCGCAC
ATCCGTCGTATGGGGTGGCAGGCACCAAAAAGGCAGAGTATTGTGCGCGG
CATGCCGGGGACGGGATGGTGAACGTAGTGAGTAAGAGGTGCTCCCATCA
TGATTGCTTCGCACATCCGTCGTATGGGGTGGCGGGCACCATAAAGGCAA
AGTTCTGTGTACAGCACGCGAAAGACGGAATGGTGCACGTGGTGAAGAAG
AAGTGCTCCTACTGGGGCTGCTCTACACGTCCGTCGTATGGGGTGGCGGG
CACCAATAAGACAGAGGTTTGTGTCCGGCATGCCGAAGACGGGATGGTGA
ACTTGCTGAGAAAGAAGTGCGCCCATCAAGGTTGCTCTACACGGCCGTCG
CATGGGGTGGCGGGCACCAAGAAGAAAGAGTTTTGTCCGAGACATGCCGA
AGACGGGATGGTGAGCGTGTTGAGCAAGAAATGCTCCCACCGGGGCTGCT
TTTTACATCCGTCGTATGGAATCGCGGGCACCAAGAAGCGAGAATTTTGT
GCGCGGCATGCCAGGGATGGGATGGTGAACTTGAGCAAGAAATGTTCCCT
TAAAGGTTGCTCTGCACAGGCGTCGTATGGGATGGCGGGCACCAGAAAGG
CAAATTTCTGTGTACAGCATGCCAAAGACGGAATGGTTGACGTGAAAGAG
GGGAAGAGCACCAGCCGCTACCGTCGTTTGATAAATCAGTCCAGTCCCTC
ACAGGTTAAGGTAGTTAAGGTAGACGTGGCTTCGCAGGACGTCGATGGTC
ATGGCGAATATTTCGGGACTGTAGGGAAAGGTAGAAAGCGCAACTCCGCA
CCAATTATTCCTTCACACAGTGATAACTCTAACTCCCGCGAGATTCGCGG
CGCCAAACGGGCTCGCATGTCCGATAGAACGAGCTGTTCAGAGCAACTGG
CCTTCCGCACGTCATCGGCAGACATGTCATCTCTCGAACATGGCGCCACC
GTCAAGACGGAGGTGGCAGTATCACCGCGTCCCGTGCCGGACCTCGTTTT
GCACCAGCGCTGACCGGTGGTGATGGACGTATCGAGTCTGATGGGGTGTC
GAAGCACGAGAGAGAGAGGTTGGTAACGATGTGGTTCTTGTTGGTATTCA
GACGTAGTAGTAGAACCATGGCTACGGCCGTGTACTATGTGCTTGTCCTC
GACCCACAGATTTACAGTGTCGGCAGTCGGCTCGTGTAGGAGACTGTAGT
GCGCGCATGAATATTCGGGGGCTAGGATTTGCTTGAGTACAGATTTGGAA
AATTGCTCCGTAGCGACGACGAGTACGGTCACCACCTTACCGTATCAAAT
AATGAGTATATACCCAGTGCATCAAGCCAACCTTTTATTGGATTTTTCTT
GCGTGCATGTCTGGTAGGAAGTTTCCAGCTGCTTTTATCGTGTTGACTGT
CACGGGGTTTTGAAATCGGCAGAGTAGCGACATGTACGCGTTTTAATTGA
AGGTACTCCGGAGCACACACCAATGACTGGTTGTACTTTACGTACTTATC
CATGCGGACGGGATCGATTCTCAGGTGTTGGACTAGGGTTTCCTTACTGG
ATGTTATTAGTAACTTGTTTCTCAAAAGGTATATATATTATGGTGGCATT
GAACACATATTGTGCTACTGCTGGCTGATAAGGCAGCGGTATCTTCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16232:2863..5311+

>mRNA_H-paniculata_contig16232.3586.1 ID=mRNA_H-paniculata_contig16232.3586.1|Name=mRNA_H-paniculata_contig16232.3586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3258bp|location=Sequence derived from alignment at H-paniculata_contig16232:2863..5311+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATGCAAACAGGGAACGTGTTCTCACGAGGGCTACTCTACACATTC
GTCGTATGGGGTGGTGGGCACCAAAAAGAGAGAATTCTGTGCGAGACGCG
CCGAAGACGGGATGGTACACGTGCTGAACAAGAAGTGCTCCCATCAGGGC
TGCTCTACACGGTCGTCGTATGGGGTGGCGGGCACCAAGAAGCCAGAGTA
TTGTGCGCAGCATGCCGAACACGGGATGGTGGACGTGCTGAACAAGAAGT
GCTCCCATCAAGGTTGCTCCACACACCCGTCATATGGGGTGGCGGGCACG
AAGAAGGCAGAATTTTGTGCGAGACATGCCAAAGACGGGATGGTGAACGT
GGTGAATAAAACGTGCTCCCACCAGGACTGCTTTTTACATCCGTCGTATG
GGGTGGTGGGCACCAAGAAGGCAGAGGTTTGTGCGCGACATGCTGAAGAT
GGGATGGTGAATGTGCTGAGGAAGAAGTGCTCCCATCAGGGCTGCTCTAC
ACACCCGTCATATGGGGTGGTGGGCACCAAGAAGGCAGAGTATTGTGCGC
GGCATGCCAGGGACGGGATGGTGAACGTAGTGAGTAAGAGGTGCTCCCAT
CATGGTTGCTTCGCACATCCGTCGTATGGGGTGGCAGGCACCAAAAAGGC
AGAGTATTGTGCGCGGCATGCCGGGGACGGGATGGTGAACGTAGTGAGTA
AGAGGTGCTCCCATCATGATTGCTTCGCACATCCGTCGTATGGGGTGGCG
GGCACCATAAAGGCAAAGTTCTGTGTACAGCACGCGAAAGACGGAATGGT
GCACGTGGTGAAGAAGAAGTGCTCCTACTGGGGCTGCTCTACACGTCCGT
CGTATGGGGTGGCGGGCACCAATAAGACAGAGGTTTGTGTCCGGCATGCC
GAAGACGGGATGGTGAACTTGCTGAGAAAGAAGTGCGCCCATCAAGGTTG
CTCTACACGGCCGTCGCATGGGGTGGCGGGCACCAAGAAGAAAGAGTTTT
GTCCGAGACATGCCGAAGACGGGATGGTGAGCGTGTTGAGCAAGAAATGC
TCCCACCGGGGCTGCTTTTTACATCCGTCGTATGGAATCGCGGGCACCAA
GAAGCGAGAATTTTGTGCGCGGCATGCCAGGGATGGGATGGTGAACTTGA
GCAAGAAATGTTCCCTTAAAGGTTGCTCTGCACAGGCGTCGTATGGGATG
GCGGGCACCAGAAAGGCAAATTTCTGTGTACAGCATGCCAAAGACGGAAT
GGTTGACGTGAAAGAGGGGAAGAGCACCAGCCGCTACCGTCGTTTGATAA
ATCAGTCCAGTCCCTCACAGGTTAAGGTAGTTAAGGTAGACGTGGCTTCG
CAGGACGTCGATGGTCATGGCGAATATTTCGGGACTGTAGGGAAAGGTAG
AAAGCGCAACTCCGCACCAATTATTCCTTCACACAGTGATAACTCTAACT
CCCGCGAGATTCGCGGCGCCAAACGGGCTCGCATGTCCGATAGAACGAGC
TGTTCAGAGCAACTGGCCTTCCGCACGTCATCGGCAGACATGTCATCTCT
CGAACATGGCGCCACCGTCAAGACGGAGGTGGCAGTATCACCGCGTCCCG
TGCCGGACCTCGTTTTGCACCAGCGCTGAATGTCATGCAAACAGGGAACG
TGTTCTCACGAGGGCTACTCTACACATTCGTCGTATGGGGTGGTGGGCAC
CAAAAAGAGAGAATTCTGTGCGAGACGCGCCGAAGACGGGATGGTACACG
TGCTGAACAAGAAGTGCTCCCATCAGGGCTGCTCTACACGGTCGTCGTAT
GGGGTGGCGGGCACCAAGAAGCCAGAGTATTGTGCGCAGCATGCCGAACA
CGGGATGGTGGACGTGCTGAACAAGAAGTGCTCCCATCAAGGTTGCTCCA
CACACCCGTCATATGGGGTGGCGGGCACGAAGAAGGCAGAATTTTGTGCG
AGACATGCCAAAGACGGGATGGTGAACGTGGTGAATAAAACGTGCTCCCA
CCAGGACTGCTTTTTACATCCGTCGTATGGGGTGGTGGGCACCAAGAAGG
CAGAGGTTTGTGCGCGACATGCTGAAGATGGGATGGTGAATGTGCTGAGG
AAGAAGTGCTCCCATCAGGGCTGCTCTACACACCCGTCATATGGGGTGGT
GGGCACCAAGAAGGCAGAGTATTGTGCGCGGCATGCCAGGGACGGGATGG
TGAACGTAGTGAGTAAGAGGTGCTCCCATCATGGTTGCTTCGCACATCCG
TCGTATGGGGTGGCAGGCACCAAAAAGGCAGAGTATTGTGCGCGGCATGC
CGGGGACGGGATGGTGAACGTAGTGAGTAAGAGGTGCTCCCATCATGATT
GCTTCGCACATCCGTCGTATGGGGTGGCGGGCACCATAAAGGCAAAGTTC
TGTGTACAGCACGCGAAAGACGGAATGGTGCACGTGGTGAAGAAGAAGTG
CTCCTACTGGGGCTGCTCTACACGTCCGTCGTATGGGGTGGCGGGCACCA
ATAAGACAGAGGTTTGTGTCCGGCATGCCGAAGACGGGATGGTGAACTTG
CTGAGAAAGAAGTGCGCCCATCAAGGTTGCTCTACACGGCCGTCGCATGG
GGTGGCGGGCACCAAGAAGAAAGAGTTTTGTCCGAGACATGCCGAAGACG
GGATGGTGAGCGTGTTGAGCAAGAAATGCTCCCACCGGGGCTGCTTTTTA
CATCCGTCGTATGGAATCGCGGGCACCAAGAAGCGAGAATTTTGTGCGCG
GCATGCCAGGGATGGGATGGTGAACTTGAGCAAGAAATGTTCCCTTAAAG
GTTGCTCTGCACAGGCGTCGTATGGGATGGCGGGCACCAGAAAGGCAAAT
TTCTGTGTACAGCATGCCAAAGACGGAATGGTTGACGTGAAAGAGGGGAA
GAGCACCAGCCGCTACCGTCGTTTGATAAATCAGTCCAGTCCCTCACAGG
TTAAGGTAGTTAAGGTAGACGTGGCTTCGCAGGACGTCGATGGTCATGGC
GAATATTTCGGGACTGTAGGGAAAGGTAGAAAGCGCAACTCCGCACCAAT
TATTCCTTCACACAGTGATAACTCTAACTCCCGCGAGATTCGCGGCGCCA
AACGGGCTCGCATGTCCGATAGAACGAGCTGTTCAGAGCAACTGGCCTTC
CGCACGTCATCGGCAGACATGTCATCTCTCGAACATGGCGCCACCGTCAA
GACGGAGGTGGCAGTATCACCGCGTCCCGTGCCGGACCTCGTTTTGCACC
AGCGCTGA
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