mRNA_H-paniculata_contig16214.3578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: D8LQU2_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU2_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.290e-57 Identity = 98/123 (79.67%), Postives = 110/123 (89.43%), Query Frame = 1
Query: 1 WPMFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGT 369
WPMFSAFLYFLAMAFTIP LP+VVNE++TGS AVT A+AT+YGLLSSTDA FTL TV HAS+SDKYGRRPF+ALS LGLG GF +TY S++VWMLLLA+AIDG TSCMYS+AQA ITDCVGT
Sbjct: 278 WPMFSAFLYFLAMAFTIPVLPKVVNELITGSNAVTAASATLYGLLSSTDASFTLMTVKFHASMSDKYGRRPFLALSALGLGLGFYLTYHSRRVWMLLLASAIDGCTSCMYSMAQACITDCVGT 400
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A6H5J9A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9A0_9PHAE) HSP 1 Score: 190 bits (483), Expect = 3.680e-54 Identity = 96/126 (76.19%), Postives = 109/126 (86.51%), Query Frame = 1
Query: 1 WPMFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGG 378
WPMFSAFLYFLAMAFTIP LP+VVNE++TGS AVT A+AT+YGLLSSTDA FTL TV HAS+SDKYGRRPF+ALS LGLG GF +TY S++VWMLLLA+AIDG TSC+ +AQA ITDCVGT G
Sbjct: 281 WPMFSAFLYFLAMAFTIPVLPKVVNELITGSNAVTAASATLYGLLSSTDASFTLLTVKFHASMSDKYGRRPFLALSALGLGLGFFLTYHSRRVWMLLLASAIDGCTSCI--MAQACITDCVGTGAG 404
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S3XMV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMV7_HETAK) HSP 1 Score: 156 bits (394), Expect = 2.620e-43 Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 1
Query: 4 PMFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMIG 438
P A YF +++ IP LP+VVN +++G++ VT +A++YG +S DALFT TVN H SLSDK+GRRPFMAL+ LGLG GFLI+ +Q WML++AAA+DG TSCMY++A A + D G L +A G FQ ++LG +FM G
Sbjct: 116 PTLVAMNYFFSLSLVIPVLPKVVNSVVSGAEEVTSRSASLYGTVSGIDALFTFLTVNAHGSLSDKFGRRPFMALASLGLGVGFLISSQAQNAWMLMVAAALDGCTSCMYAIANAYVVDVAAPSGRLVQALGAFQAIALGGSFMFG 260
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S2UYU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYU2_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.360e-36 Identity = 65/131 (49.62%), Postives = 98/131 (74.81%), Query Frame = 1
Query: 34 AMAFTIPGLPRVVNEMLTGS--KAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLG 420
A++F IP LP+VVN++++G VTPA A++YG++S DALFT TV+ LSD +GR+PFM + +GLG GF +T ++K WMLL+AAA+DG +SCMY+++QA + D V + L+E++G+FQG++LG
Sbjct: 1 AISFVIPVLPKVVNDVVSGGTQSGVTPAGASMYGVVSGMDALFTFLTVSAAGVLSDHFGRKPFMLYASVGLGTGFALTCFARKTWMLLVAAALDGCSSCMYAVSQAFVAD-VSPKEKLAESYGVFQGVALG 130
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A836CIS1_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS1_9STRA) HSP 1 Score: 121 bits (303), Expect = 6.710e-30 Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1
Query: 187 LSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMIG 438
+SD YGR+PFM LS +GLG GF IT S++VW LLLAAA+DGS+SCMYS+AQA +TDCVG LSEA GLFQGL++GMAF IG
Sbjct: 1 MSDTYGRKPFMLLSTVGLGLGFTITLLSRRVWPLLLAAAVDGSSSCMYSIAQACVTDCVGRGDKLSEALGLFQGLAIGMAFTIG 84
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S0TRX5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TRX5_HEMAN) HSP 1 Score: 114 bits (285), Expect = 7.280e-27 Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 16 AFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQ---KVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMIG 438
A LYF+++A IP +P++VN +LTG+ VT ++ + L +TD FT T N +LSD+YGR+PF+ +S LG+ G + +VW + L A+IDG TSCM+ L QA ++D V L+ G+F G++ G++FMIG
Sbjct: 91 AMLYFMSVALAIPSMPKLVNNILTGAGRVTSSSQMVLAALLATDGFFTFLTNNFWGTLSDRYGRKPFLTMSALGIAVGAALVAVGAHMGRVWPMFLGASIDGCTSCMFGLGQAYVSD-VSHPKELAGNIGVFLGIAAGVSFMIG 233
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S2XVI5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVI5_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.260e-24 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 1 WPMFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMIG 438
WP+ + F++ + A P LPRVVNE+++G ++VT +A YGLL+ L TV+ +LSD++GR+PF+ LS +GLG +L + VW+L L A I GST M + A + D V L EA LF G+ G +FM+G
Sbjct: 74 WPISTYFIHSVGCALVYPALPRVVNEIVSGGESVTFQSAGTYGLLTGLMGLCGFLTVSGAGTLSDQFGRKPFLILSAIGLGMNYLAACFGKSVWILFLGAMIAGSTQFMQCIGNAFVADVVRPEK-LPEALALFIGIGKGASFMLG 218
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S2CZ70_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZ70_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.970e-20 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1
Query: 1 WPMFSAFLYFLAMAFTIPGLPRVVNEMLT--GSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMIG 438
W + +LYF+A+ F+IP LPRV+ ++ GS VTPA+ + G + + D + T V +LSD GR+P MA S LG G LI + + L LA +DG +SCM ++ + + DC + G+FQGLS+G AF+IG
Sbjct: 77 WAVLHNWLYFIALGFSIPNLPRVIATIVNEDGSAGVTPASTRLKGDVEAVDKILTFCGVGFLGALSDVKGRKPLMAWSALGFGLTLLIQGLTTQTSHLYLADVVDGLSSCMGAVCTSYVADC-SAPDKRAINLGVFQGLSVGGAFIIG 223
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: A0A7S4V3G5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V3G5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.530e-16 Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query: 1 WPMFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVT----PATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLI-TYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFMI 435
W +F +L+ L++ F + VV ++ + T P + G + S D L T + ++LSDK GR+P M S +G LI C++ V +L LA IDG +SCM L QA +TDC T+ L+ + G+FQGLS+G AF++
Sbjct: 98 WGVFHNWLHMLSIGFNAINIQFVVRSIVDKTTDFTQKPSPEAIALSGKVESVDRLLTFLGIGFLSALSDKVGRKPLMIWSCVGFSLTNLIQAKCTESVALLYLADFIDGCSSCMLPLCQAYVTDCC-TKETLAASLGIFQGLSVGGAFIL 246
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Match: UPI0019A6D173 (MFS transporter n=1 Tax=Herminiimonas sp. TaxID=1926289 RepID=UPI0019A6D173) HSP 1 Score: 80.1 bits (196), Expect = 1.020e-15 Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query: 13 SAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFTLFTVNLHASLSDKYGRRPFMALSVLGLGAGFLITYCSQKVWMLLLAAAIDGSTSCMYSLAQASITDCVGTRGGLSEAFGLFQGLSLGMAFM 432
+ FL L + IP LP ++ + TG + A YGLLS + F L +LSD+YGRRP + LS+ GLG FL+ S +WML++A I G T +++A A I D V T S+ G G + GM F+
Sbjct: 35 AVFLDVLGIGLIIPVLPTLIGQFTTGFDSQ----AYWYGLLSMVYGVMQFFFAPLLGALSDRYGRRPVLLLSIFGLGLDFLLMAFSSSLWMLVIARIIGGITGASFTVAAAYIAD-VTTEDNRSKGLGAI-GAAFGMGFI 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16214.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16214.3578.1 >prot_H-paniculata_contig16214.3578.1 ID=prot_H-paniculata_contig16214.3578.1|Name=mRNA_H-paniculata_contig16214.3578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp MFSAFLYFLAMAFTIPGLPRVVNEMLTGSKAVTPATATIYGLLSSTDALFback to top mRNA from alignment at H-paniculata_contig16214:241..4527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16214.3578.1 ID=mRNA_H-paniculata_contig16214.3578.1|Name=mRNA_H-paniculata_contig16214.3578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4287bp|location=Sequence derived from alignment at H-paniculata_contig16214:241..4527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16214:241..4527+ >mRNA_H-paniculata_contig16214.3578.1 ID=mRNA_H-paniculata_contig16214.3578.1|Name=mRNA_H-paniculata_contig16214.3578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig16214:241..4527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |