mRNA_H-paniculata_contig1621.3573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1621.3573.1
Unique NamemRNA_H-paniculata_contig1621.3573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1621.3573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1621contigH-paniculata_contig1621:10720..12340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.110658-CDS-H-paniculata_contig1621:10721..110011622929295.110658-CDS-H-paniculata_contig1621:10721..11001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1621 10722..11001 -
1691480804.2847972-CDS-H-paniculata_contig1621:10721..110011691480804.2847972-CDS-H-paniculata_contig1621:10721..11001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1621 10722..11001 -
1622929295.120971-CDS-H-paniculata_contig1621:12170..123401622929295.120971-CDS-H-paniculata_contig1621:12170..12340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1621 12171..12340 -
1691480804.293656-CDS-H-paniculata_contig1621:12170..123401691480804.293656-CDS-H-paniculata_contig1621:12170..12340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1621 12171..12340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1621.3573.1prot_H-paniculata_contig1621.3573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1621 10722..12340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1621.3573.1

>prot_H-paniculata_contig1621.3573.1 ID=prot_H-paniculata_contig1621.3573.1|Name=mRNA_H-paniculata_contig1621.3573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
KESGGAGLGSCLFCNVMYPISELEAHVNKHMDEEEERKRKEETKAEAAAK
LQKRRERRTPLSYIHDPRDYPSDPSIGGGGGGRRYKAEFPMSGDGSERGK
GKVKDTVKSEESAAPAAGARAAGVRAAGVRAAAMAAVAATLGGVAEHEGG
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mRNA from alignment at H-paniculata_contig1621:10720..12340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1621.3573.1 ID=mRNA_H-paniculata_contig1621.3573.1|Name=mRNA_H-paniculata_contig1621.3573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1621bp|location=Sequence derived from alignment at H-paniculata_contig1621:10720..12340- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGTCGGGGGGCGCGGGATTGGGCTCCTGTCTATTCTGCAATGTGAT
GTATCCGATATCGGAGCTAGAGGCCCACGTTAACAAGCACATGGACGAGG
AGGAAGAACGAAAGAGGAAGGAGGAGACGAAGGCGGAGGCAGCTGCCAAA
CTGCAGAAACGCCGGGAGAGGTGATTTTTTTCTGGGGGCGGGGGCAAGGA
AGGGTCGTTATATGTGCTGTAGATGAACAACGGAATTGTCCTCATATGAA
CGACTGGCACCATAAATTAAAAACCGTTGAATTCACTAACTGAAATTCTC
ATCCTGCCCTAGTCAGTCAGTTGGACTGTAACTCTGTACCTCATCCCATA
TTCCATTGTACCCATGTGGAGCTTATGTGGCTGACTTTAACCTGCAGTTG
TATACTTGTATCAACAAACTAAATCAATGGGGGCGGGGGGGGTTCGATAC
GGTGTGTGGTTACGAGGCGTTCGGGTCTTGTCTCTGATTCGTTTACCCCC
GTTGCTCCATTTTTGATGCCTTTTGTTCGATTTTGATTTTTTTTCGTAGT
ACTTACTGATCAGACTTGCTTCTTTTCACCAGGTGTTTTTTTTCATCCTT
TGTGCCGCATAGCAATTACTAGTACGTGTAAGGTGATGGGTCATTTATTT
CGAATTCGTCATTCAAGTGCTTTTGTGATAGCGGTGATCTTTTGCAGGAC
CATTTTTGAAACGCTTTTTCCCGATGTTTTCGCGGCGCAGCTCTAGTCGT
AACTCAACATCCTACTTGGTGGTACTATCCTATGGTTTTTGTAGGGGTAT
TATGAAAATATTGCATGCTTGTTTACGTCCACTCCACTCTACTTCCTGTT
CGTCCCTCGACGTACACATGCCCCCCTTTCCCCGGTTTTGGTTGTAGCAC
TTGCAGCTTGACTGAAGCATCTTAACGCGCCTCTCCGCGTCTCTTCTCTT
CGTTGGTTTTTCCGTGCTCCCATGTTGGGTTCCTTCAACAAACCCCGCTT
ACTTCTGATCGGTTTTGGGGAACAGATCAATCCGGCCACTTGGCTGATAT
CAAATAACTAAGCATATACCTCCAAAATTTTTATTGGTGATGACAGTAAT
AAGCTTATTTTCTATTTGCACTGGTACATATTTTCAAACCTTGTTCCCCT
GCAGTGTTGTCGATTCTATCTGGTTGTCTGTCTGCCTCTCTTTCCTGTTG
GTGAAGTTGTCTTTGGCAGGAGACCCCACCTTACCTTTCCTCCTTTTCTT
CTCCCCCCCCCCAAAAAAAAAACGTTCTGGATCGTGACACCCAAAAAAAT
GAACAACCGTCCGCACACGACACACACTGCTCGCGCCAGGAGGACACCCC
TGTCGTACATCCACGATCCCCGCGATTACCCGAGCGACCCCAGTATCGGC
GGCGGTGGTGGCGGCCGCCGGTACAAAGCCGAATTTCCCATGAGCGGCGA
CGGCTCCGAGAGAGGGAAAGGGAAAGTAAAGGACACTGTCAAGAGCGAAG
AGAGCGCCGCGCCCGCGGCAGGTGCAAGGGCGGCGGGTGTCAGGGCAGCG
GGAGTCAGGGCGGCGGCAATGGCAGCAGTGGCGGCGACGCTCGGGGGGGT
TGCAGAGCATGAAGGTGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1621:10720..12340-

>mRNA_H-paniculata_contig1621.3573.1 ID=mRNA_H-paniculata_contig1621.3573.1|Name=mRNA_H-paniculata_contig1621.3573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig1621:10720..12340- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGTCGGGGGGCGCGGGATTGGGCTCCTGTCTATTCTGCAATGTGAT
GTATCCGATATCGGAGCTAGAGGCCCACGTTAACAAGCACATGGACGAGG
AGGAAGAACGAAAGAGGAAGGAGGAGACGAAGGCGGAGGCAGCTGCCAAA
CTGCAGAAACGCCGGGAGAGAAGGAGTCGGGGGGCGCGGGATTGGGCTCC
TGTCTATTCTGCAATGTGATGTATCCGATATCGGAGCTAGAGGCCCACGT
TAACAAGCACATGGACGAGGAGGAAGAACGAAAGAGGAAGGAGGAGACGA
AGGCGGAGGCAGCTGCCAAACTGCAGAAACGCCGGGAGAGGAGGACACCC
CTGTCGTACATCCACGATCCCCGCGATTACCCGAGCGACCCCAGTATCGG
CGGCGGTGGTGGCGGCCGCCGGTACAAAGCCGAATTTCCCATGAGCGGCG
ACGGCTCCGAGAGAGGGAAAGGGAAAGTAAAGGACACTGTCAAGAGCGAA
GAGAGCGCCGCGCCCGCGGCAGGTGCAAGGGCGGCGGGTGTCAGGGCAGC
GGGAGTCAGGGCGGCGGCAATGGCAGCAGTGGCGGCGACGCTCGGGGGGG
TTGCAGAGCATGAAGGTGGAGAGGACACCCCTGTCGTACATCCACGATCC
CCGCGATTACCCGAGCGACCCCAGTATCGGCGGCGGTGGTGGCGGCCGCC
GGTACAAAGCCGAATTTCCCATGAGCGGCGACGGCTCCGAGAGAGGGAAA
GGGAAAGTAAAGGACACTGTCAAGAGCGAAGAGAGCGCCGCGCCCGCGGC
AGGTGCAAGGGCGGCGGGTGTCAGGGCAGCGGGAGTCAGGGCGGCGGCAA
TGGCAGCAGTGGCGGCGACGCTCGGGGGGGTTGCAGAGCATGAAGGTGGA
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