prot_H-paniculata_contig162.3571.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig162.3571.1
Unique Nameprot_H-paniculata_contig162.3571.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length566
Homology
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BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 9.520e-34
Identity = 267/453 (58.94%), Postives = 301/453 (66.45%), Query Frame = 0 
Query:   32 VEKKLTGAASGGPKTAIGYLLGDLRMKPGEVKEAVIRCPALLKLTDRGPHGVASWLQGGLGLSADDVAKMFRRHPSMLTYSIVHNLRPKFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQASSDIVRRAIFRQXXXXXXXXXXXXXXXXXXXQDRLGMSEKAAWTLIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDFFEHEMGNVEPEQLLSCLEARPSALSASLGKRLTVRIAKMRSGGVEPALQEHLRAVTSLTDAQFKAWL 484
            +++++TG ++GGP+TA+GYLLG+LRM+P EVK+AV+R PAL+ L+ RGPH VASWLQGGLGLSADDV KM R+HP+++  SIVHNLRPK RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXX                   ++ ASS +VRR +FRQ          XXXXXXXXXQDRLGMSE AAW  IGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                          IDFF+  MG VEP  L+  LE +PS L+ASLGKRL  R ++MR  G+EP      RA+  LT+ QF+AW+
Sbjct:  318 MKERMTGRSAGGPQTAVGYLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVASWLQGGLGLSADDVGKMIRKHPAIVACSIVHNLRPKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTFFTLSSXXXXXXXXXXL------------------TSHASSKVVRRVLFRQPSLLGHNADGXXXXXXXXXQDRLGMSEAAAWKFIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCIEDNLAPT----------------------------------------------------------------IDFFQFGMGEVEPSDLMDGLEMKPSVLAASLGKRLIPRASRMRRAGIEPNFLRDYRAIAQLTEPQFRAWM 688
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BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.010e-30
Identity = 59/91 (64.84%), Postives = 78/91 (85.71%), Query Frame = 0 
Query:   32 VEKKLTGAASGGPKTAIGYLLGDLRMKPGEVKEAVIRCPALLKLTDRGPHGVASWLQGGLGLSADDVAKMFRRHPSMLTYSIVHNLRPKFR 122
            ++++LTG ++GGP+TA+GYLLG+LRM+P EVK+AV+R PAL+ L+ RGPH V SWLQGGLGLS DDV KM R++P+++  SIVHNLRPK R
Sbjct:  312 MKERLTGRSAGGPQTAVGYLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRPKLR 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R0_ECTSI9.520e-3458.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAG1_9PHAE6.010e-3064.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 99..131
e-value: 4.4E-6
score: 36.2
coord: 173..205
e-value: 200.0
score: 9.4
coord: 282..314
e-value: 8.9
score: 15.3
coord: 245..277
e-value: 0.12
score: 21.5
coord: 210..241
e-value: 67.0
score: 12.4
coord: 356..387
e-value: 0.037
score: 23.2
coord: 319..351
e-value: 0.11
score: 21.7
coord: 393..425
e-value: 3.2E-5
score: 33.4
coord: 136..168
e-value: 0.022
score: 23.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 54..164
e-value: 3.6E-11
score: 42.6
coord: 168..470
e-value: 1.0E-34
score: 119.9
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 45..183
e-value: 6.2E-21
score: 76.7
coord: 184..332
e-value: 4.7E-22
score: 80.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 369..484
coord: 242..385
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 369..484
coord: 242..385
coord: 115..167
coord: 86..126
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 177..236
coord: 115..167
coord: 86..126
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 177..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig162contigH-paniculata_contig162:8684..33968 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig162.3571.1mRNA_H-paniculata_contig162.3571.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig162 8660..35215 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig162.3571.1 ID=prot_H-paniculata_contig162.3571.1|Name=mRNA_H-paniculata_contig162.3571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=566bp
MSLKKRLGMSDAEVEALRGWAHRSGLANDRAVEKKLTGAASGGPKTAIGY
LLGDLRMKPGEVKEAVIRCPALLKLTDRGPHGVASWLQGGLGLSADDVAK
MFRRHPSMLTYSIVHNLRPKFRWLQEDLGLSRARAIRLVLRCPAIFGLSI
EDNMLPKVQWLTEELFMTKREAASVIFGNPGVLLSSIERSLEPKIAWLEN
NLSMQQEMVIDMIRRYPMFFSLSSEDNLGPKIDWLSAQASSDIVRRAIFR
QPSLLGHNAQGNLAPKVQWLQDRLGMSEKAAWTLIGRSPGFLTLSVSDTL
EPKLWWLRDKLDMTLQGAAKLVAAYPTLFDLSIEDSLEPKLWWVRDALGL
DRPDAAAVLRRCPQIFGSSLKDTLEPKLSWLTRRLQTTRERVAAMVLKFP
QLLTYSIDDNLAPTIDFFEHEMGNVEPEQLLSCLEARPSALSASLGKRLT
VRIAKMRSGGVEPALQEHLRAVTSLTDAQFKAWLVKNRAKARSRSIDNKR
AEGELSAAGMHPRDSGRTGSSAKKAPPKSKVLDISGGRTTSTVVVGRKYK
NRPTVETQKIAAENP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf