mRNA_H-paniculata_contig162.3569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig162.3569.1
Unique NamemRNA_H-paniculata_contig162.3569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig162.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig162contigH-paniculata_contig162:6066..7725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1235
Cds size1233
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929294.5442336-CDS-H-paniculata_contig162:6065..63271622929294.5442336-CDS-H-paniculata_contig162:6065..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 6066..6327 +
1691480804.0032377-CDS-H-paniculata_contig162:6065..63271691480804.0032377-CDS-H-paniculata_contig162:6065..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 6066..6327 +
1622929294.5589857-CDS-H-paniculata_contig162:6752..77231622929294.5589857-CDS-H-paniculata_contig162:6752..7723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 6753..7723 +
1691480804.0118551-CDS-H-paniculata_contig162:6752..77231691480804.0118551-CDS-H-paniculata_contig162:6752..7723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 6753..7723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig162.3569.1prot_H-paniculata_contig162.3569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig162 6066..7723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig162.3569.1

>prot_H-paniculata_contig162.3569.1 ID=prot_H-paniculata_contig162.3569.1|Name=mRNA_H-paniculata_contig162.3569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=411bp
VDPTAFVLASSQARVTLSLSIVVYRCVCCYLPLFLLAVYQQHTMAFAGSS
LNMSTFFRAPAAIDLPYPGCQPAAAAVLACFAVSQGGAKSRRLSLGISPL
RNLHEVGIRERPKETPGLGIFTAAAACCLQGRRTFHRAKRQSHVECLALS
SPLQMKWTPNSLSWPARSLVPSCKSSVRNGDSYMDMDGEENGQGWRRRRR
RSDVFCPLACAARATDGPSGGGEFSSETEEMVQSALDSKNNGAAPKPAKR
RVGRPSGSTKAGTTKSCASRRKPLKSETDDSERAADNVAGGGRVDGTSGR
SATEGLSSPPPAVKKKPQADPGEVIGSSSRTRSSKSLSRQASGDLVDTGM
TAASASVTNSNSKTGEKSSQKDIALKTKGAVANYDDEIVTSLLRRGKRRG
NRKPRGLPRGE
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mRNA from alignment at H-paniculata_contig162:6066..7725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig162.3569.1 ID=mRNA_H-paniculata_contig162.3569.1|Name=mRNA_H-paniculata_contig162.3569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1660bp|location=Sequence derived from alignment at H-paniculata_contig162:6066..7725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATCCCACCGCCTTCGTACTGGCGTCTTCACAGGCACGGGTAACCTT
GTCCCTTTCTATTGTAGTCTACCGCTGTGTGTGCTGCTATCTACCGTTAT
TTTTGCTTGCCGTGTACCAGCAACACACGATGGCCTTCGCTGGGTCATCC
CTGAATATGTCAACATTCTTCCGAGCCCCCGCAGCGATAGACCTTCCGTA
TCCTGGATGCCAACCTGCCGCAGCGGCAGTTCTGGCATGTTTTGCTGTGT
CCCAGGGAGGAGGTACGTCACTATTGTTACTCGAAAACATGCTATTGCGA
GCCTGTGGATTGGACTGCAGGCAATGTTCCATTATTTATCAGCAATGCTG
TACAATCTATGAATGCAGTCCCACCGTAAAGGTCTCCGTCTGATAAACAG
GTGCGCCTTTCCTTTTAGAGAAGGGGTACATCCCAATACATAACATGCGT
TGTGTGCTCGCGACCGCGGCGCCTCTCTTTTGATTTACGCTGTCTAAATA
TACCTAGTACTATAGAAGTCGTGCATACGAATACCTAGCTCACACATGTT
GTCTGGTAAAATTGACTGCGAACTGAAGCAGCAGCTCACTACTTTGTTAA
ACGATGCGAAAGGTATGATTATTTGCAGGGAGTCGCAGTGGTGGTATGTA
ACCCAAAACCGGAACCGTCCCCGTCCTCGGTCCTCAGCCAAGAGCAGGCG
ACTCTCGCTAGGGATATCACCACTACGAAATTTGCACGAAGTCGGGATCC
GAGAGAGGCCAAAGGAAACACCAGGACTCGGCATCTTTACGGCCGCCGCC
GCATGTTGTTTGCAGGGGCGACGAACATTCCACAGAGCGAAGCGCCAGTC
GCATGTCGAATGCCTTGCTTTATCCTCGCCCCTCCAAATGAAGTGGACGC
CCAACTCCTTGTCATGGCCTGCTCGTTCACTGGTACCTAGCTGTAAATCC
AGCGTCAGAAATGGGGATAGTTACATGGATATGGATGGCGAGGAGAACGG
GCAAGGGTGGCGGCGACGGAGGCGGCGCTCTGACGTATTTTGCCCTCTCG
CGTGCGCCGCACGGGCTACTGATGGTCCGAGCGGCGGGGGCGAATTTTCG
TCTGAAACAGAAGAGATGGTGCAAAGTGCGCTTGACAGCAAGAACAATGG
CGCAGCTCCCAAGCCTGCGAAGCGAAGGGTCGGACGGCCTAGCGGGTCCA
CCAAGGCTGGGACGACGAAATCATGTGCCTCTCGAAGAAAGCCGCTGAAG
AGCGAAACAGATGATTCGGAAAGAGCAGCCGACAATGTCGCTGGGGGCGG
TCGTGTTGATGGTACTAGTGGTCGGTCGGCAACGGAGGGGTTGTCCTCGC
CACCACCAGCGGTGAAAAAGAAGCCTCAGGCGGATCCGGGGGAGGTTATA
GGTTCGTCCTCAAGAACACGATCGTCGAAATCCTTGTCGCGACAAGCGTC
CGGCGATCTTGTTGATACAGGGATGACGGCCGCCTCTGCTAGCGTGACGA
ATAGCAATAGCAAGACCGGCGAGAAATCAAGTCAAAAAGATATTGCCTTG
AAGACGAAGGGCGCTGTGGCGAACTATGACGACGAGATAGTGACATCTTT
ATTGAGAAGAGGGAAGCGCCGGGGCAACAGAAAACCACGTGGTTTGCCGC
GGGGAGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig162:6066..7725+

>mRNA_H-paniculata_contig162.3569.1 ID=mRNA_H-paniculata_contig162.3569.1|Name=mRNA_H-paniculata_contig162.3569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2466bp|location=Sequence derived from alignment at H-paniculata_contig162:6066..7725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATCCCACCGCCTTCGTACTGGCGTCTTCACAGGCACGGGTAACCTT
GTCCCTTTCTATTGTAGTCTACCGCTGTGTGTGCTGCTATCTACCGTTAT
TTTTGCTTGCCGTGTACCAGCAACACACGATGGCCTTCGCTGGGTCATCC
CTGAATATGTCAACATTCTTCCGAGCCCCCGCAGCGATAGACCTTCCGTA
TCCTGGATGCCAACCTGCCGCAGCGGCAGTTCTGGCATGTTTTGCTGTGT
CCCAGGGAGGAGGTTGATCCCACCGCCTTCGTACTGGCGTCTTCACAGGC
ACGGGTAACCTTGTCCCTTTCTATTGTAGTCTACCGCTGTGTGTGCTGCT
ATCTACCGTTATTTTTGCTTGCCGTGTACCAGCAACACACGATGGCCTTC
GCTGGGTCATCCCTGAATATGTCAACATTCTTCCGAGCCCCCGCAGCGAT
AGACCTTCCGTATCCTGGATGCCAACCTGCCGCAGCGGCAGTTCTGGCAT
GTTTTGCTGTGTCCCAGGGAGGAGCCAAGAGCAGGCGACTCTCGCTAGGG
ATATCACCACTACGAAATTTGCACGAAGTCGGGATCCGAGAGAGGCCAAA
GGAAACACCAGGACTCGGCATCTTTACGGCCGCCGCCGCATGTTGTTTGC
AGGGGCGACGAACATTCCACAGAGCGAAGCGCCAGTCGCATGTCGAATGC
CTTGCTTTATCCTCGCCCCTCCAAATGAAGTGGACGCCCAACTCCTTGTC
ATGGCCTGCTCGTTCACTGGTACCTAGCTGTAAATCCAGCGTCAGAAATG
GGGATAGTTACATGGATATGGATGGCGAGGAGAACGGGCAAGGGTGGCGG
CGACGGAGGCGGCGCTCTGACGTATTTTGCCCTCTCGCGTGCGCCGCACG
GGCTACTGATGGTCCGAGCGGCGGGGGCGAATTTTCGTCTGAAACAGAAG
AGATGGTGCAAAGTGCGCTTGACAGCAAGAACAATGGCGCAGCTCCCAAG
CCTGCGAAGCGAAGGGTCGGACGGCCTAGCGGGTCCACCAAGGCTGGGAC
GACGAAATCATGTGCCTCTCGAAGAAAGCCGCTGAAGAGCGAAACAGATG
ATTCGGAAAGAGCAGCCGACAATGTCGCTGGGGGCGGTCGTGTTGATGGT
ACTAGTGGTCGGTCGGCAACGGAGGGGTTGTCCTCGCCACCACCAGCGGT
GAAAAAGAAGCCTCAGGCGGATCCGGGGGAGGTTATAGGTTCGTCCTCAA
GAACACGATCGTCGAAATCCTTGTCGCGACAAGCGTCCGGCGATCTTGTT
GATACAGGGATGACGGCCGCCTCTGCTAGCGTGACGAATAGCAATAGCAA
GACCGGCGAGAAATCAAGTCAAAAAGATATTGCCTTGAAGACGAAGGGCG
CTGTGGCGAACTATGACGACGAGATAGTGACATCTTTATTGAGAAGAGGG
AAGCGCCGGGGCAACAGAAAACCACGTGGTTTGCCGCGGGGAGAGCCAAG
AGCAGGCGACTCTCGCTAGGGATATCACCACTACGAAATTTGCACGAAGT
CGGGATCCGAGAGAGGCCAAAGGAAACACCAGGACTCGGCATCTTTACGG
CCGCCGCCGCATGTTGTTTGCAGGGGCGACGAACATTCCACAGAGCGAAG
CGCCAGTCGCATGTCGAATGCCTTGCTTTATCCTCGCCCCTCCAAATGAA
GTGGACGCCCAACTCCTTGTCATGGCCTGCTCGTTCACTGGTACCTAGCT
GTAAATCCAGCGTCAGAAATGGGGATAGTTACATGGATATGGATGGCGAG
GAGAACGGGCAAGGGTGGCGGCGACGGAGGCGGCGCTCTGACGTATTTTG
CCCTCTCGCGTGCGCCGCACGGGCTACTGATGGTCCGAGCGGCGGGGGCG
AATTTTCGTCTGAAACAGAAGAGATGGTGCAAAGTGCGCTTGACAGCAAG
AACAATGGCGCAGCTCCCAAGCCTGCGAAGCGAAGGGTCGGACGGCCTAG
CGGGTCCACCAAGGCTGGGACGACGAAATCATGTGCCTCTCGAAGAAAGC
CGCTGAAGAGCGAAACAGATGATTCGGAAAGAGCAGCCGACAATGTCGCT
GGGGGCGGTCGTGTTGATGGTACTAGTGGTCGGTCGGCAACGGAGGGGTT
GTCCTCGCCACCACCAGCGGTGAAAAAGAAGCCTCAGGCGGATCCGGGGG
AGGTTATAGGTTCGTCCTCAAGAACACGATCGTCGAAATCCTTGTCGCGA
CAAGCGTCCGGCGATCTTGTTGATACAGGGATGACGGCCGCCTCTGCTAG
CGTGACGAATAGCAATAGCAAGACCGGCGAGAAATCAAGTCAAAAAGATA
TTGCCTTGAAGACGAAGGGCGCTGTGGCGAACTATGACGACGAGATAGTG
ACATCTTTATTGAGAAGAGGGAAGCGCCGGGGCAACAGAAAACCACGTGG
TTTGCCGCGGGGAGAG
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