mRNA_H-paniculata_contig16178.3559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16178.3559.1
Unique NamemRNA_H-paniculata_contig16178.3559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.960e-46
Identity = 85/128 (66.41%), Postives = 102/128 (79.69%), Query Frame = -1
Query:  267 NLRKQSDFCDQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIK 650
            +LR+++ F DQ+VVP SLR LVI+ CH  PSS GHLA K TFDK++DRYW PT+ +DI + V+SC+SCQRRKTS R P LPVGHRPVT+ FQCVAVDLV +KS S G R+ILSVID  TR V+LI IK
Sbjct:  479 HLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLAFKGTFDKVRDRYWWPTMHSDITRHVQSCESCQRRKTSYRPPQLPVGHRPVTQPFQCVAVDLVEYKSLSEGNRYILSVIDHLTRFVILIPIK 606          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HK90_9ALVE (Uncharacterized protein n=3 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HK90_9ALVE)

HSP 1 Score: 90.1 bits (222), Expect = 2.640e-17
Identity = 53/135 (39.26%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
            VVP +LRA ++   H    + GH  +++T  K+ D+++ PTV ADI   V+SC++CQ+RK + +  +   +P+   P+T +    A+D VG    S GKR I+SV+D ++R VVLIA+ +++V+ IAR L++ VF
Sbjct:  120 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADIKNYVKSCETCQQRKDAFKKEHPMIVPLSTEPLTHM----AIDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKVTTIARALLDNVF 249          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4G1L4_9ALVE (Integrase catalytic domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1L4_9ALVE)

HSP 1 Score: 88.6 bits (218), Expect = 2.700e-17
Identity = 51/135 (37.78%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
            VVP +LRA ++   H    + GH  +++T  K+ D+++ PTV AD+   V+SC++CQ+RK + +  +   +P+  +P+T +    AVD +G    S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF
Sbjct:   48 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHPMIVPLSTKPLTHM----AVDTIGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVF 177          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4H374_9ALVE (Integrase catalytic domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H374_9ALVE)

HSP 1 Score: 88.2 bits (217), Expect = 1.380e-16
Identity = 53/140 (37.86%), Postives = 88/140 (62.86%), Query Frame = -1
Query:  207 VVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPV---GHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAG 617
            +VVP +LRA ++   H    + GH  +++T  K+ D+++ PTV AD+   V+SC++CQ+RK + +  +L +      P+T +    AVD VG    S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF  +G
Sbjct:  636 IVVPCALRAEILANHHGHLCT-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHLMIVSLSIEPLTHI----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVFFVSG 770          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A6P7UTR1_IXOSC (RNA-directed DNA polymerase n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7UTR1_IXOSC)

HSP 1 Score: 88.2 bits (217), Expect = 1.410e-16
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = -1
Query:  168 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRV-FQCVAVDLVGHKSKS--RGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAGHGTDF-RKRGRTVT 623
            +Q+VVP  LR  V+   H    S GH  +K T D++ + ++ P VQ D+ + V+SC  CQR      +  +P+G+ PV    FQ VA+D+VG  S +  +G R++L+++D STR    +A+   E   IA  L+E +FSR G   +    RG++ T
Sbjct:  457 EQLVVPTGLRTFVLKMAHEGILS-GHQGIKRTTDRVLEEFYWPGVQGDVTRFVKSCDICQRTVPKHLVGRVPMGNMPVIETAFQRVAIDIVGPLSPTSEKGNRYVLTMVDYSTRYPDAVALPSIETERIAEALLE-MFSRVGFPREIISDRGKSFT 610          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4G1L2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1L2_9ALVE)

HSP 1 Score: 88.2 bits (217), Expect = 1.410e-16
Identity = 52/135 (38.52%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
            VVP +LRA ++T  H    +R H  +++T  K+ D+++ PT+ AD+   V+SC++CQ+RK + +  +   +P+   P+T +    AVD VG    S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF
Sbjct:  505 VVPRALRAEILTDHHGYLCAR-HGGIRSTLAKVTDKFFWPTMTADVENYVKSCETCQQRKDAFKKEHPMIVPLSTEPLTHM----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVF 634          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HP31_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HP31_9ALVE)

HSP 1 Score: 85.5 bits (210), Expect = 1.160e-15
Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  219 FCDQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 629
            F    VVP +LRA ++   H    + GH  +++   K+ D+++ PTV AD+   V+SC++CQ+RK + +  +   +P+   P+T +    AVD VG    S GKR I+SV+D ++R VVLIA+ +++ + IAR L + VF
Sbjct:  432 FWTLTVVPRALRAEILADHHGHLCA-GHGGIRSMLAKVTDKFFWPTVTADVENYVKSCKTCQQRKDAFKKEHPMIVPLSTEPLTHI----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATMIARALFDNVF 566          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: UPI001C70E839 (uncharacterized protein LOC122262710 n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70E839)

HSP 1 Score: 85.1 bits (209), Expect = 1.580e-15
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  180 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRP-VTRVFQCVAVDLVG--HKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAG--------HGTDFRKRG 623
            +Q+VVP  LR  V+   H+S  S GHL +K T  +IQ++++ P +Q+++ +   SC  CQR     R+    +G  P +T  FQ VAVD+VG        G R+IL+++D +TR    I +K+ E  ++A  L+  VFSR G         G+ FR  G
Sbjct:  473 EQIVVPCELRDAVMEIAHSSLMS-GHLGIKKTLMRIQNKFFWPGMQSEVARFCRSCDPCQRTVDKGRVSRAKLGRMPMITEPFQRVAVDIVGPIEPRADDGSRYILTIVDYATRYPEAIPLKNIETISVAEALMS-VFSRVGIPKEIMSDKGSQFRVNG 629          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HG54_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HG54_9ALVE)

HSP 1 Score: 84.3 bits (207), Expect = 3.160e-15
Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = -1
Query:  219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
            VVP +LRA ++   H    + GH  +++T  K+ D+++ PTV AD+   V+SC++CQ+RK + +  +   +P+   P+T +    AVD VG    S GKR I+SV+D ++R VVLIA+ +++ + IA+ L+  VF
Sbjct:  916 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHPMIVPLLTEPLTHM----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIAQALLNNVF 1045          
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: UPI001A9E5CBB (uncharacterized protein LOC120836604 n=3 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9E5CBB)

HSP 1 Score: 83.2 bits (204), Expect = 7.730e-15
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  168 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRV-FQCVAVDLVGHKSKS--RGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAGHGTDF-RKRGRTVT 623
            +Q+VVP  LR  V+   H    S GH  +K T D++ + ++ P VQ D+   V+SC  CQR      +  +P+ + PV    FQ VA+D+VG  S +  +G R++L+++D STR    +A+   E   IA  L+E +FSR G   +    RG++ T
Sbjct:  616 EQLVVPTGLRTFVLKMAHEGILS-GHQGIKRTTDRVLEEFYWPGVQGDVTWFVKSCDICQRTVPKHLVGRVPLKNMPVIETPFQRVAIDIVGPLSPTSEKGNRYVLTMVDYSTRYPDAVALPSIETERIAEALLE-MFSRVGFPREIISDRGKSFT 769          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LN90_9PHAE1.960e-4666.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4HK90_9ALVE2.640e-1739.26Uncharacterized protein n=3 Tax=Chromera velia CCM... [more]
A0A0G4G1L4_9ALVE2.700e-1737.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A0G4H374_9ALVE1.380e-1637.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6P7UTR1_IXOSC1.410e-1635.90RNA-directed DNA polymerase n=1 Tax=Ixodes scapula... [more]
A0A0G4G1L2_9ALVE1.410e-1638.52Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4HP31_9ALVE1.160e-1537.14Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
UPI001C70E8391.580e-1535.85uncharacterized protein LOC122262710 n=1 Tax=Penae... [more]
A0A0G4HG54_9ALVE3.160e-1537.78Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
UPI001A9E5CBB7.730e-1535.26uncharacterized protein LOC120836604 n=3 Tax=Ixode... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16178contigH-paniculata_contig16178:3180..3832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.714978-CDS-H-paniculata_contig16178:3179..35571622929291.714978-CDS-H-paniculata_contig16178:3179..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16178 3180..3557 +
1691480803.4990962-CDS-H-paniculata_contig16178:3179..35571691480803.4990962-CDS-H-paniculata_contig16178:3179..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16178 3180..3557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.7261164-UTR-H-paniculata_contig16178:3557..38321622929291.7261164-UTR-H-paniculata_contig16178:3557..3832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16178 3558..3832 +
1691480803.5092714-UTR-H-paniculata_contig16178:3557..38321691480803.5092714-UTR-H-paniculata_contig16178:3557..3832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16178 3558..3832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16178.3559.1prot_H-paniculata_contig16178.3559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16178 3180..3557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16178.3559.1

>prot_H-paniculata_contig16178.3559.1 ID=prot_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
FIFHASNNREDGAPPKIYRGTFTVRLITVEIALHPNLTAEKIVTNNRDIN
YRACVTVTVLPRFRKSVPCPALENTRSTRWRAIALTSLSLIAIRTTSLVE
QSITDNINRLPRDLDLCPTKSTATH*
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mRNA from alignment at H-paniculata_contig16178:3180..3832+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16178.3559.1 ID=mRNA_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at H-paniculata_contig16178:3180..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATATTTCACGCCAGTAATAACCGTGAAGATGGCGCTCCACCGAAAAT TTACCGCGGAACATTTACCGTACGGTTAATTACCGTAGAGATAGCGCTCC ACCCAAACCTTACCGCGGAGAAAATTGTTACCAATAACCGTGACATTAAT TATCGTGCTTGCGTTACCGTTACCGTTCTACCCCGTTTTCGAAAATCCGT ACCGTGCCCAGCCCTGGAAAATACGCGTTCGACGAGGTGGCGAGCAATAG CGCTCACCTCCTTGTCCTTGATTGCGATCAGAACGACTAGTCTAGTGGAG CAATCGATCACCGACAATATAAATCGTTTGCCACGGGACTTGGATTTATG CCCAACCAAATCAACTGCCACACATTGAAATACACGCGTAACGGGGCGAT GTCCAACGGGCAAATTCGGCATACGGCGAGAGGTCTTTCTCCGTTGGCAG GACTGACAGCTTTCGACACGTTTGCAGATATCGGCTTGCACAGTAGGCAA CCAATAACGATCTTGAATCTTATCGAAAGTGGCTTTGACAGCCAAATGAC CACGAGACGACGGTGAGGCGTGACACCAAGTGATGACAAGGGCGCGCAAT GAGCCGGGAACAACGACTTGGTCACAAAAGTCAGACTGTTTCCGTAGGTT TCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16178:3180..3832+

>mRNA_H-paniculata_contig16178.3559.1 ID=mRNA_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig16178:3180..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATATTTCACGCCAGTAATAACCGTGAAGATGGCGCTCCACCGAAAAT
TTACCGCGGAACATTTACCGTACGGTTAATTACCGTAGAGATAGCGCTCC
ACCCAAACCTTACCGCGGAGAAAATTGTTACCAATAACCGTGACATTAAT
TATCGTGCTTGCGTTACCGTTACCGTTCTACCCCGTTTTCGAAAATCCGT
ACCGTGCCCAGCCCTGGAAAATACGCGTTCGACGAGGTGGCGAGCAATAG
CGCTCACCTCCTTGTCCTTGATTGCGATCAGAACGACTAGTCTAGTGGAG
CAATCGATCACCGACAATATAAATCGTTTGCCACGGGACTTGGATTTATG
CCCAACCAAATCAACTGCCACACATTGATTCATATTTCACGCCAGTAATA
ACCGTGAAGATGGCGCTCCACCGAAAATTTACCGCGGAACATTTACCGTA
CGGTTAATTACCGTAGAGATAGCGCTCCACCCAAACCTTACCGCGGAGAA
AATTGTTACCAATAACCGTGACATTAATTATCGTGCTTGCGTTACCGTTA
CCGTTCTACCCCGTTTTCGAAAATCCGTACCGTGCCCAGCCCTGGAAAAT
ACGCGTTCGACGAGGTGGCGAGCAATAGCGCTCACCTCCTTGTCCTTGAT
TGCGATCAGAACGACTAGTCTAGTGGAGCAATCGATCACCGACAATATAA
ATCGTTTGCCACGGGACTTGGATTTATGCCCAACCAAATCAACTGCCACA
CATTGA
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