mRNA_H-paniculata_contig16178.3559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.960e-46 Identity = 85/128 (66.41%), Postives = 102/128 (79.69%), Query Frame = -1
Query: 267 NLRKQSDFCDQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIK 650
+LR+++ F DQ+VVP SLR LVI+ CH PSS GHLA K TFDK++DRYW PT+ +DI + V+SC+SCQRRKTS R P LPVGHRPVT+ FQCVAVDLV +KS S G R+ILSVID TR V+LI IK
Sbjct: 479 HLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLAFKGTFDKVRDRYWWPTMHSDITRHVQSCESCQRRKTSYRPPQLPVGHRPVTQPFQCVAVDLVEYKSLSEGNRYILSVIDHLTRFVILIPIK 606
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HK90_9ALVE (Uncharacterized protein n=3 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HK90_9ALVE) HSP 1 Score: 90.1 bits (222), Expect = 2.640e-17 Identity = 53/135 (39.26%), Postives = 87/135 (64.44%), Query Frame = -1
Query: 219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
VVP +LRA ++ H + GH +++T K+ D+++ PTV ADI V+SC++CQ+RK + + + +P+ P+T + A+D VG S GKR I+SV+D ++R VVLIA+ +++V+ IAR L++ VF
Sbjct: 120 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADIKNYVKSCETCQQRKDAFKKEHPMIVPLSTEPLTHM----AIDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKVTTIARALLDNVF 249
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4G1L4_9ALVE (Integrase catalytic domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1L4_9ALVE) HSP 1 Score: 88.6 bits (218), Expect = 2.700e-17 Identity = 51/135 (37.78%), Postives = 87/135 (64.44%), Query Frame = -1
Query: 219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
VVP +LRA ++ H + GH +++T K+ D+++ PTV AD+ V+SC++CQ+RK + + + +P+ +P+T + AVD +G S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF
Sbjct: 48 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHPMIVPLSTKPLTHM----AVDTIGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVF 177
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4H374_9ALVE (Integrase catalytic domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H374_9ALVE) HSP 1 Score: 88.2 bits (217), Expect = 1.380e-16 Identity = 53/140 (37.86%), Postives = 88/140 (62.86%), Query Frame = -1
Query: 207 VVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPV---GHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAG 617
+VVP +LRA ++ H + GH +++T K+ D+++ PTV AD+ V+SC++CQ+RK + + +L + P+T + AVD VG S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF +G
Sbjct: 636 IVVPCALRAEILANHHGHLCT-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHLMIVSLSIEPLTHI----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVFFVSG 770
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A6P7UTR1_IXOSC (RNA-directed DNA polymerase n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7UTR1_IXOSC) HSP 1 Score: 88.2 bits (217), Expect = 1.410e-16 Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = -1
Query: 168 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRV-FQCVAVDLVGHKSKS--RGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAGHGTDF-RKRGRTVT 623
+Q+VVP LR V+ H S GH +K T D++ + ++ P VQ D+ + V+SC CQR + +P+G+ PV FQ VA+D+VG S + +G R++L+++D STR +A+ E IA L+E +FSR G + RG++ T
Sbjct: 457 EQLVVPTGLRTFVLKMAHEGILS-GHQGIKRTTDRVLEEFYWPGVQGDVTRFVKSCDICQRTVPKHLVGRVPMGNMPVIETAFQRVAIDIVGPLSPTSEKGNRYVLTMVDYSTRYPDAVALPSIETERIAEALLE-MFSRVGFPREIISDRGKSFT 610
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4G1L2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1L2_9ALVE) HSP 1 Score: 88.2 bits (217), Expect = 1.410e-16 Identity = 52/135 (38.52%), Postives = 87/135 (64.44%), Query Frame = -1
Query: 219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
VVP +LRA ++T H +R H +++T K+ D+++ PT+ AD+ V+SC++CQ+RK + + + +P+ P+T + AVD VG S GKR I+SV+D ++R VVLIA+ +++ + IAR L++ VF
Sbjct: 505 VVPRALRAEILTDHHGYLCAR-HGGIRSTLAKVTDKFFWPTMTADVENYVKSCETCQQRKDAFKKEHPMIVPLSTEPLTHM----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIARALLDNVF 634
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HP31_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HP31_9ALVE) HSP 1 Score: 85.5 bits (210), Expect = 1.160e-15 Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = -1
Query: 219 FCDQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 629
F VVP +LRA ++ H + GH +++ K+ D+++ PTV AD+ V+SC++CQ+RK + + + +P+ P+T + AVD VG S GKR I+SV+D ++R VVLIA+ +++ + IAR L + VF
Sbjct: 432 FWTLTVVPRALRAEILADHHGHLCA-GHGGIRSMLAKVTDKFFWPTVTADVENYVKSCKTCQQRKDAFKKEHPMIVPLSTEPLTHI----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATMIARALFDNVF 566
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: UPI001C70E839 (uncharacterized protein LOC122262710 n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70E839) HSP 1 Score: 85.1 bits (209), Expect = 1.580e-15 Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = -1
Query: 180 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRP-VTRVFQCVAVDLVG--HKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAG--------HGTDFRKRG 623
+Q+VVP LR V+ H+S S GHL +K T +IQ++++ P +Q+++ + SC CQR R+ +G P +T FQ VAVD+VG G R+IL+++D +TR I +K+ E ++A L+ VFSR G G+ FR G
Sbjct: 473 EQIVVPCELRDAVMEIAHSSLMS-GHLGIKKTLMRIQNKFFWPGMQSEVARFCRSCDPCQRTVDKGRVSRAKLGRMPMITEPFQRVAVDIVGPIEPRADDGSRYILTIVDYATRYPEAIPLKNIETISVAEALMS-VFSRVGIPKEIMSDKGSQFRVNG 629
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: A0A0G4HG54_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HG54_9ALVE) HSP 1 Score: 84.3 bits (207), Expect = 3.160e-15 Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = -1
Query: 219 VVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPN---LPVGHRPVTRVFQCVAVDLVGHKSKSRGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVF 614
VVP +LRA ++ H + GH +++T K+ D+++ PTV AD+ V+SC++CQ+RK + + + +P+ P+T + AVD VG S GKR I+SV+D ++R VVLIA+ +++ + IA+ L+ VF
Sbjct: 916 VVPRALRAEILADHHGHLCA-GHGGIRSTLAKVTDKFFWPTVTADVENYVKSCETCQQRKDAFKKEHPMIVPLLTEPLTHM----AVDTVGPLPTSEGKRVIISVMDLASRFVVLIAVPNQKATTIAQALLNNVF 1045
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Match: UPI001A9E5CBB (uncharacterized protein LOC120836604 n=3 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9E5CBB) HSP 1 Score: 83.2 bits (204), Expect = 7.730e-15 Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query: 168 DQVVVPGSLRALVITWCHASPSSRGHLAVKATFDKIQDRYWLPTVQADICKRVESCQSCQRRKTSRRMPNLPVGHRPVTRV-FQCVAVDLVGHKSKS--RGKRFILSVIDCSTRLVVLIAIKDKEVSAIARHLVERVFSRAGHGTDF-RKRGRTVT 623
+Q+VVP LR V+ H S GH +K T D++ + ++ P VQ D+ V+SC CQR + +P+ + PV FQ VA+D+VG S + +G R++L+++D STR +A+ E IA L+E +FSR G + RG++ T
Sbjct: 616 EQLVVPTGLRTFVLKMAHEGILS-GHQGIKRTTDRVLEEFYWPGVQGDVTWFVKSCDICQRTVPKHLVGRVPLKNMPVIETPFQRVAIDIVGPLSPTSEKGNRYVLTMVDYSTRYPDAVALPSIETERIAEALLE-MFSRVGFPREIISDRGKSFT 769 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16178.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16178.3559.1 >prot_H-paniculata_contig16178.3559.1 ID=prot_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp FIFHASNNREDGAPPKIYRGTFTVRLITVEIALHPNLTAEKIVTNNRDINback to top mRNA from alignment at H-paniculata_contig16178:3180..3832+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16178.3559.1 ID=mRNA_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at H-paniculata_contig16178:3180..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16178:3180..3832+ >mRNA_H-paniculata_contig16178.3559.1 ID=mRNA_H-paniculata_contig16178.3559.1|Name=mRNA_H-paniculata_contig16178.3559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig16178:3180..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |