mRNA_H-paniculata_contig16176.3556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16176.3556.1
Unique NamemRNA_H-paniculata_contig16176.3556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16176.3556.1 vs. uniprot
Match: A0A6H5JUL1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUL1_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 8.340e-139
Identity = 247/365 (67.67%), Postives = 270/365 (73.97%), Query Frame = 1 
Query:    1 QTGVEKQCVYSPRLKSGRKKKVRVDGVMYDEGVGPTADGSCGLALVPNGRGWGSGYTVDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESRVTEGMLEVLSPAVSSRGLSQASPIPQPESRRQAKRAVFWGVVAMGSRILNAEEEATEWYSCLMRAALRECVGSNDKEASVVQAYLLLSTVETMRGHEEAGKRYLEHAQAMHNGNAIGPEGQLLQHRQEQDESLDLVFQIYGQPDGCVGQIN----VIDWSDSHRST--SSTSDERGVEAXXXXXXXXXXXXXCAERCGSSSA---SAVDQMIAQAMSPPTESQSGPLKALKYLSTACGLSSEVFDPTNKCVTVMQYLGEMDTALK 1068
            +TGV  QCVYSPRLKSGRKKK R+DGV+Y+EG   T  G    A     R       VDPSAGRFSASGAVGLAGHVENFFLATYLRDFNR+VPLTTES VTEGMLEVLSPAVSSRGL+ A+PI QPE+RRQA+ AVFWGVVAMGSRIL A +E+T  Y  LMR+ALREC   NDKE  VVQAYLLLSTVETMRG+E AGKRYL+HA  MHNGNAIGPEG+LL+ R EQD SLDLVFQ+Y QPDG V   N    V DW  +  +T  S TS E+                      GS S    SAVDQMIAQA+SPP+E QS PLKALKYLST CGLSSEVFDPTNKCVTV QYL EMD+ALK
Sbjct:  146 ETGVPNQCVYSPRLKSGRKKKFRIDGVLYEEG---TYGGELARANPGGVR-----RNVDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRLVPLTTESSVTEGMLEVLSPAVSSRGLATANPIKQPETRRQARLAVFWGVVAMGSRILGAADESTVRYLGLMRSALRECFDCNDKE--VVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNAIGPEGKLLRDRSEQDVSLDLVFQMYDQPDGAVSGFNRSGAVGDWRRNQNATKGSPTSPEQTHSGG-----------------GSDSGKPTSAVDQMIAQAVSPPSECQSSPLKALKYLSTVCGLSSEVFDPTNKCVTVKQYLAEMDSALK 483
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BLAST of mRNA_H-paniculata_contig16176.3556.1 vs. uniprot
Match: A0A836CBP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.230e-32
Identity = 105/329 (31.91%), Postives = 154/329 (46.81%), Query Frame = 1 
Query:   88 DEGVG----PTADGSCGLALVPNGRGWGSGYTVDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESRVTEGMLEVLSPAVSSRGLSQASPIPQPESRRQAKRAVFWGVVAMGSRILNAEEEATEWYSCLMRAALRECVGSNDKEASVVQAYLLLSTVETMRGHEEAGKRYLEHAQAMHNGNAIGPEGQLLQHRQEQDESLDLVFQIYGQPDGCVGQINVIDWSDSHRSTSSTSDERGVEAXXXXXXXXXXXXXCAERCGSSSASAVDQMIAQAMSPPTESQSGPLKALKYLSTACGLSSEVFDPTNKCVTVMQYLGEMDTA 1062
            DE  G    P A  S  + +    R    G  V P A  F+AS A+GL GHVEN F+A Y+RD N  +P+T+E  V  GMLE        + L  A+  P    RR AK AVFWGVVA+GSRIL A     E Y   + AALR+C   +D    VVQAYLLL ++ETM G+    +RY+  A+ +H   A      + +  Q Q E L+ + Q++G     + + + +D      S ++T+                            +A+A  +M+       T     P+ AL+       ++ +V DP + C  V+ +L  ++ A
Sbjct:  243 DESAGLPVVPAAPKSTAMVVTTADREPLHGGLVHPLARPFTASPALGLVGHVENIFIAAYIRDLNNFIPMTSEGAVMSGMLET------GKSLVPANAAPAASKRRSAKLAVFWGVVALGSRILGAPRADVERYRAQVTAALRDCFDEDDP--MVVQAYLLLGSLETMLGNCPKARRYMHFAKTVH---ASLRAKSVQEQHQAQLEGLETLLQVFG---ARMCECDAVDEGPCTASGANTA---------------------------VAAAACSEMLQSIFMARTGQAVKPMDALRLTLGMPNITRKVLDPESPCPIVLAHLHHLENA 530
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BLAST of mRNA_H-paniculata_contig16176.3556.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-5
Identity = 45/151 (29.80%), Postives = 61/151 (40.40%), Query Frame = 1 
Query:  187 GRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESRVTEGMLEVLSPAVSSRGLSQASPIPQPESRRQAKRAVFWGVVAMGSRILNAEEEATEWYSCLMRAALRECVGSNDKEASVVQAYLLLSTVETMRGHEEAGKRYLEHAQAMHNG 639
            G F A  A GL G +EN+FLA+YL+D +   PL  ES V  GM++                         A RA                            AAL  C   ++ +  VV+AYLLL T+ +M G+    KRY   +Q +H G
Sbjct:  772 GSFRAGPATGLVGRLENYFLASYLKDLHGFTPLACESIVVRGMMQAF-----------------------ADRAA---------------------------AALGACF--DEPDVQVVRAYLLLGTLHSMLGNASKAKRYAHFSQTLHAG 870
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16176.3556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUL1_9PHAE8.340e-13967.67Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
A0A836CBP3_9STRA9.230e-3231.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YR83_9STRA2.130e-529.80Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16176contigH-paniculata_contig16176:484..2763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1068
Cds size1068
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16176.3556.1prot_H-paniculata_contig16176.3556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16176 484..2763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.564149-CDS-H-paniculata_contig16176:483..10141622929291.564149-CDS-H-paniculata_contig16176:483..1014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 484..1014 -
1691480803.4285376-CDS-H-paniculata_contig16176:483..10141691480803.4285376-CDS-H-paniculata_contig16176:483..1014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 484..1014 -
1622929291.5762348-CDS-H-paniculata_contig16176:1765..22391622929291.5762348-CDS-H-paniculata_contig16176:1765..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 1766..2239 -
1691480803.439071-CDS-H-paniculata_contig16176:1765..22391691480803.439071-CDS-H-paniculata_contig16176:1765..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 1766..2239 -
1622929291.5866241-CDS-H-paniculata_contig16176:2700..27631622929291.5866241-CDS-H-paniculata_contig16176:2700..2763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 2701..2763 -
1691480803.448419-CDS-H-paniculata_contig16176:2700..27631691480803.448419-CDS-H-paniculata_contig16176:2700..2763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 2701..2763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16176.3556.1

>prot_H-paniculata_contig16176.3556.1 ID=prot_H-paniculata_contig16176.3556.1|Name=mRNA_H-paniculata_contig16176.3556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=356bp
QTGVEKQCVYSPRLKSGRKKKVRVDGVMYDEGVGPTADGSCGLALVPNGR
GWGSGYTVDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESR
VTEGMLEVLSPAVSSRGLSQASPIPQPESRRQAKRAVFWGVVAMGSRILN
AEEEATEWYSCLMRAALRECVGSNDKEASVVQAYLLLSTVETMRGHEEAG
KRYLEHAQAMHNGNAIGPEGQLLQHRQEQDESLDLVFQIYGQPDGCVGQI
NVIDWSDSHRSTSSTSDERGVEAAAASAAAAEVSACCAERCGSSSASAVD
QMIAQAMSPPTESQSGPLKALKYLSTACGLSSEVFDPTNKCVTVMQYLGE
MDTALK
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mRNA from alignment at H-paniculata_contig16176:484..2763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16176.3556.1 ID=mRNA_H-paniculata_contig16176.3556.1|Name=mRNA_H-paniculata_contig16176.3556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2280bp|location=Sequence derived from alignment at H-paniculata_contig16176:484..2763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACCGGCGTTGAGAAGCAATGTGTCTACAGCCCCAGACTCAAGAGCGG
TCGGAAAAAGAAGGTGACACACAGCAACCTGCGTGCCGCATGCGCTGTAC
TCTATTTCATGTGCTGACCAGAATCCAGGTGCCGGTACTAAATAATACAC
TTGCGGTTCAAGACCCGAGGGCTGGGTTCTTGGCTGATGAGCGTTGTGTT
TCGGTATGCAGCTCTCGCGTAATGCTCTATCAAGTCGCTTCGTCTAGTAT
CGTCTTCAGCAACAAGCGTGTTTGCTCCGTCGAAGACATGACCAACAATC
TTCCCTACGATGCGATGTACGGGGGAGAGTTGACTATCGTTGAAAGCACG
CCACTCCATCTCCTGCGGAAGTGAGAGAAACAGAGAAAGGGAGGGCATGG
CCCTTCTGAAGCGGCGGCGGTCGAAACCCCACTGCAGGACACACTACCGC
CAGTAGCTCGATCACCAACCACACACGGTATTTTGAAATAAAATGACCCA
CACATCATATCACATGTCATACAGGTGCGCGTTGACGGCGTTATGTACGA
CGAAGGAGTGGGTCCGACGGCCGACGGATCCTGCGGGCTGGCCTTGGTGC
CCAACGGCCGGGGGTGGGGCAGCGGGTACACGGTCGACCCGTCCGCGGGC
CGGTTCTCGGCGTCGGGCGCCGTGGGCCTGGCGGGTCACGTTGAAAACTT
TTTCCTTGCCACCTATCTCCGCGACTTCAATCGCATCGTTCCCCTTACCA
CGGAGAGCCGTGTCACGGAGGGGATGTTGGAGGTTCTTTCCCCTGCCGTG
TCTTCAAGGGGCTTATCGCAGGCGAGTCCCATCCCCCAGCCGGAGTCTAG
ACGGCAGGCCAAGCGGGCGGTGTTCTGGGGCGTCGTCGCGATGGGATCGC
GGATCCTGAACGCGGAAGAGGAGGCCACCGAGTGGTATTCGTGTTTGATG
CGTGCGGCGCTGCGGGAGTGCGTCGGCAGCAATGACAAGGAGGCAAGTGT
GTTTTTGGGGGGTTTTCGGAAGGGGGGGGGGGGGGGGGGGAAAATCTTGG
TGGTACCCATGTTGGGGTTTTGCAGCCCATCTGAAATTTCAGCTGTGTAC
GTTTCTCAGCAAAATTTGGATACATGTGTAGTGAAATCGAAAGGTCGTGT
TTGGCTCGTGTCGCCATAAGACAAATTGTGTTGTTGCTAGGAGCGGGTTC
TCAGCGTCTCATTTTCTGTCATTTTTTGTCATTTTTTGTTTTACTCGAGA
CCCAGATTGCACGTAGCGCGCTTACAAATGGCGTTTTGCAACCATTGGTA
CCGAAGTATGCGTATTGCTCCTACTAAGATATTCCTACTTGTAAGATGAG
GTATGGAGTCCACCGCGGAGTGCTGTCAGTCAGGAAGGGTATGATATTTC
CGTGAAGCTGGCATCCAATCCGATCAGTCTTTGTAACTCTTGTCCTTGAC
TGCTGCATGTTACTCTGGTAGTCAGTTCGCTCATCGCATGGACGATTAAT
ATTGAATTTTTATTCTTTCTTCTTCGTCATGTTTTTCCACCTTGAACTTT
TCTCCCAACACCGCTCGCGAACAGTATACCCACAAATGAAAATTAGAGAA
ACGGCTGCAACAGCCAAAAACAGTATTGCAAAAATTGAACAGTTAGCTTG
CAATGCTGTCATCATGATCACAAAATGTAATACGACTACTCTGCAGACGT
TCAACCTCTTGACCTGTCTCCCACGTTTCATTTTCAAACGCCACGGCAGG
TCGTCCAAGCGTACCTCCTTCTCTCCACCGTAGAAACTATGCGCGGCCAC
GAGGAGGCCGGCAAGCGCTACCTAGAGCACGCGCAAGCTATGCACAACGG
TAATGCCATAGGGCCGGAGGGACAGCTCCTCCAGCACCGACAAGAACAGG
ACGAGTCCCTCGACCTCGTCTTCCAGATCTACGGCCAGCCGGACGGCTGT
GTCGGACAGATCAATGTGATCGATTGGTCAGATTCACATCGCTCTACATC
GTCAACCAGTGACGAAAGAGGTGTGGAGGCCGCCGCTGCAAGCGCCGCGG
CTGCCGAAGTCTCAGCTTGTTGTGCGGAGAGGTGCGGATCGTCGAGCGCA
AGCGCGGTGGATCAGATGATTGCGCAGGCGATGTCGCCTCCGACTGAATC
ACAGTCCGGCCCCCTCAAGGCCCTCAAGTACCTTAGCACGGCGTGCGGGC
TGTCATCCGAGGTGTTTGACCCCACCAACAAGTGCGTCACGGTCATGCAG
TATCTAGGAGAGATGGATACTGCTCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16176:484..2763-

>mRNA_H-paniculata_contig16176.3556.1 ID=mRNA_H-paniculata_contig16176.3556.1|Name=mRNA_H-paniculata_contig16176.3556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at H-paniculata_contig16176:484..2763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACCGGCGTTGAGAAGCAATGTGTCTACAGCCCCAGACTCAAGAGCGG
TCGGAAAAAGAAGCAGACCGGCGTTGAGAAGCAATGTGTCTACAGCCCCA
GACTCAAGAGCGGTCGGAAAAAGAAGGTGCGCGTTGACGGCGTTATGTAC
GACGAAGGAGTGGGTCCGACGGCCGACGGATCCTGCGGGCTGGCCTTGGT
GCCCAACGGCCGGGGGTGGGGCAGCGGGTACACGGTCGACCCGTCCGCGG
GCCGGTTCTCGGCGTCGGGCGCCGTGGGCCTGGCGGGTCACGTTGAAAAC
TTTTTCCTTGCCACCTATCTCCGCGACTTCAATCGCATCGTTCCCCTTAC
CACGGAGAGCCGTGTCACGGAGGGGATGTTGGAGGTTCTTTCCCCTGCCG
TGTCTTCAAGGGGCTTATCGCAGGCGAGTCCCATCCCCCAGCCGGAGTCT
AGACGGCAGGCCAAGCGGGCGGTGTTCTGGGGCGTCGTCGCGATGGGATC
GCGGATCCTGAACGCGGAAGAGGAGGCCACCGAGTGGTATTCGTGTTTGA
TGCGTGCGGCGCTGCGGGAGTGCGTCGGCAGCAATGACAAGGAGGCAAGT
GTGCGCGTTGACGGCGTTATGTACGACGAAGGAGTGGGTCCGACGGCCGA
CGGATCCTGCGGGCTGGCCTTGGTGCCCAACGGCCGGGGGTGGGGCAGCG
GGTACACGGTCGACCCGTCCGCGGGCCGGTTCTCGGCGTCGGGCGCCGTG
GGCCTGGCGGGTCACGTTGAAAACTTTTTCCTTGCCACCTATCTCCGCGA
CTTCAATCGCATCGTTCCCCTTACCACGGAGAGCCGTGTCACGGAGGGGA
TGTTGGAGGTTCTTTCCCCTGCCGTGTCTTCAAGGGGCTTATCGCAGGCG
AGTCCCATCCCCCAGCCGGAGTCTAGACGGCAGGCCAAGCGGGCGGTGTT
CTGGGGCGTCGTCGCGATGGGATCGCGGATCCTGAACGCGGAAGAGGAGG
CCACCGAGTGGTATTCGTGTTTGATGCGTGCGGCGCTGCGGGAGTGCGTC
GGCAGCAATGACAAGGAGGCAAGTGTCGTCCAAGCGTACCTCCTTCTCTC
CACCGTAGAAACTATGCGCGGCCACGAGGAGGCCGGCAAGCGCTACCTAG
AGCACGCGCAAGCTATGCACAACGGTAATGCCATAGGGCCGGAGGGACAG
CTCCTCCAGCACCGACAAGAACAGGACGAGTCCCTCGACCTCGTCTTCCA
GATCTACGGCCAGCCGGACGGCTGTGTCGGACAGATCAATGTGATCGATT
GGTCAGATTCACATCGCTCTACATCGTCAACCAGTGACGAAAGAGGTGTG
GAGGCCGCCGCTGCAAGCGCCGCGGCTGCCGAAGTCTCAGCTTGTTGTGC
GGAGAGGTGCGGATCGTCGAGCGCAAGCGCGGTGGATCAGATGATTGCGC
AGGCGATGTCGCCTCCGACTGAATCACAGTCCGGCCCCCTCAAGGCCCTC
AAGTACCTTAGCACGGCGTGCGGGCTGTCATCCGAGGTGTTTGACCCCAC
CAACAAGTGCGTCACGGTCATGCAGTATCTAGGAGAGATGGATACTGCTC
TCAAGGTCGTCCAAGCGTACCTCCTTCTCTCCACCGTAGAAACTATGCGC
GGCCACGAGGAGGCCGGCAAGCGCTACCTAGAGCACGCGCAAGCTATGCA
CAACGGTAATGCCATAGGGCCGGAGGGACAGCTCCTCCAGCACCGACAAG
AACAGGACGAGTCCCTCGACCTCGTCTTCCAGATCTACGGCCAGCCGGAC
GGCTGTGTCGGACAGATCAATGTGATCGATTGGTCAGATTCACATCGCTC
TACATCGTCAACCAGTGACGAAAGAGGTGTGGAGGCCGCCGCTGCAAGCG
CCGCGGCTGCCGAAGTCTCAGCTTGTTGTGCGGAGAGGTGCGGATCGTCG
AGCGCAAGCGCGGTGGATCAGATGATTGCGCAGGCGATGTCGCCTCCGAC
TGAATCACAGTCCGGCCCCCTCAAGGCCCTCAAGTACCTTAGCACGGCGT
GCGGGCTGTCATCCGAGGTGTTTGACCCCACCAACAAGTGCGTCACGGTC
ATGCAGTATCTAGGAGAGATGGATACTGCTCTCAAG
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