mRNA_H-paniculata_contig16173.3555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16173.3555.1
Unique NamemRNA_H-paniculata_contig16173.3555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16173.3555.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.900e-17
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3 
Query:    3 VRTLSLMLEESKKEYRYVKERNQEMERVVEALRKTIMRQAELSSQRQDHHQQGQ-QRPPTHAYRGG 197
            VR+LSL++EE+KKE R+++ERNQE+ERVVEALRKTIMRQAELSSQRQD    G  QRPP+HA+RGG
Sbjct:  425 VRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQGTGPGQRPPSHAFRGG 490
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BLAST of mRNA_H-paniculata_contig16173.3555.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.310e-17
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3 
Query:    3 VRTLSLMLEESKKEYRYVKERNQEMERVVEALRKTIMRQAELSSQRQDHHQQGQ-QRPPTHAYRGG 197
            VR+LSL++EE+KKE R+++ERNQE+ERVVEALRKTIMRQAELSSQRQD    G  QRPP+HA+RGG
Sbjct:  376 VRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQGTGPGQRPPSHAFRGG 441
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BLAST of mRNA_H-paniculata_contig16173.3555.1 vs. uniprot
Match: A0A835YKF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.090e-8
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 3 
Query:    3 VRTLSLMLEESKKEYRYVKERNQEMERVVEALRKTIMRQAELSSQRQDHHQQG 161
            +R+L+++LEES+KE +++++R  E ER++EALRKTIMRQAELSSQR + H  G
Sbjct:  239 IRSLAVLLEESRKEAKWLRDRTSESERIIEALRKTIMRQAELSSQRDNAHAAG 291
[Close]
BLAST of mRNA_H-paniculata_contig16173.3555.1 vs. uniprot
Match: A0A836CGJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.660e-8
Identity = 31/46 (67.39%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:    3 VRTLSLMLEESKKEYRYVKERNQEMERVVEALRKTIMRQAELSSQR 140
            +R+L+++LEES+KE R++++RN E ERV+EALRKTIMRQAEL+SQR
Sbjct:  309 LRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQR 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16173.3555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTA0_ECTSI4.900e-1774.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMF9_9PHAE5.310e-1774.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKF1_9STRA4.090e-858.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGJ9_9STRA7.660e-867.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16173contigH-paniculata_contig16173:396..1822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog2880.D7FTA0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZB3@1,2SGA8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size358
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16173.3555.1prot_H-paniculata_contig16173.3555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16173 396..1802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.4053857-CDS-H-paniculata_contig16173:395..5921622929291.4053857-CDS-H-paniculata_contig16173:395..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16173 396..592 -
1691480803.3779395-CDS-H-paniculata_contig16173:395..5921691480803.3779395-CDS-H-paniculata_contig16173:395..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16173 396..592 -
1622929291.4220214-CDS-H-paniculata_contig16173:1663..18021622929291.4220214-CDS-H-paniculata_contig16173:1663..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16173 1664..1802 -
1691480803.3915894-CDS-H-paniculata_contig16173:1663..18021691480803.3915894-CDS-H-paniculata_contig16173:1663..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16173 1664..1802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.4489987-UTR-H-paniculata_contig16173:1802..18221622929291.4489987-UTR-H-paniculata_contig16173:1802..1822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16173 1803..1822 -
1691480803.3993495-UTR-H-paniculata_contig16173:1802..18221691480803.3993495-UTR-H-paniculata_contig16173:1802..1822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16173 1803..1822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16173.3555.1

>prot_H-paniculata_contig16173.3555.1 ID=prot_H-paniculata_contig16173.3555.1|Name=mRNA_H-paniculata_contig16173.3555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MLEESKKEYRYVKERNQEMERVVEALRKTIMRQAELSSQRQDHHQQGQQR
PPTHAYRGGSSRPQPQQHYHHPQPLVGNAGGTRGNSSATGSVYQDGVGGG
GGVNAHHHGSLS
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mRNA from alignment at H-paniculata_contig16173:396..1822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16173.3555.1 ID=mRNA_H-paniculata_contig16173.3555.1|Name=mRNA_H-paniculata_contig16173.3555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig16173:396..1822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTCGTACTCTGAGTCTTATGCTCGAGGAAAGCAAAAAGGAATATCGA
TACGTGAAAGAAAGGAACCAAGAGATGGAGAGAGTGGTGGAGGCTCTCCG
CAAGACCATCATGCGACAGGCAGAACTTTCCAGTCAGCGACAAGACCACC
ATCAACAAGGTCAGTCAGCCGAACCACGTTTATTATTCCGGTCAGCTGAC
ATCAGCATACGTAGGCAAGAATCCCGACAAAAAAAATTGTAGTCAGATGT
AAGATATGGCATCGTACGTCCCCGTACCCAAGGGGATGGTTTATTTCTAT
ACTTTAGCCTAACAAGCTCATCGGGGAGGTGTTATCTACCGTATTATCTC
ATTGCTACTACATACAGCGTGGTACTTTTTTTTGAATTTGTTTTGATAAA
TGTGTATATATATATATATATTTTTTTTTTGAAATTTACAATTTGCATTT
CAATATATGGTTTCATGTATGTGGTATTTAGTAACGGTCAAATGTTCACT
TTATTGTAGAGTATTTGTGAGTACACAGCTTGAGTTTTGTCACAATATGT
GGGTTATACTCTGCTAGACTTTCCACTTGTAAGCCAATCGTCAAGCCCCC
CAAGCTTGCCAGGTAAGTTGATTTTGTTGTTGAGGTACAACGTTGGTACG
TATGGGGGTGCCCTAGTATAATTTGATCGCCTAACAGCGATTGCCATCAT
GCAGAATTCGATCACCTTGCTACAATACTCACTTCCGAGAAATTCTCCAT
TACGTCGCCATTTTGCAATTTGCATCTCGAATTCGGCGTTTCATGCCTTC
TTCTAGTCGGTTTACGTATGGAACAGCTTAGCCTTTATGACCGTGGATGC
ACTCACCAGGGTCATAGATGGGGTGTGTTTTTTATCTCCAATCAACATTT
TTTTTTGGTGTTATTATCTTGTCGCCAACTGTGAGGTGCTCCTGCCTGAG
ATCTATTCGTATGGTACGGTACACTCATTGCCAGAGGTGTTACTGAGTTT
CTCGGATGTTTGTTGATGTATTTTTTGTACGGCATTGTGACACACAAGTG
ATATTTGAGACGAGATGGAGCCATAATGTAAGCATGAGGTGGATGAATCT
ATCAAGTCGGGTGTTTTGGCTCGTTGATGAATGCTTGCCGTAGGTAAGCT
AGATATTGTTTTTTCACTGTGGACCACCTCGTGAAGCACCCCCCCCCCTC
CGTCGCCTCTCAACAAACTATTGTCCCCAGGCCAACAACGCCCCCCGACA
CACGCCTACCGTGGAGGTTCCAGCCGCCCCCAGCCACAACAACACTACCA
CCACCCTCAACCCTTGGTCGGAAATGCCGGAGGCACCCGGGGAAATTCCT
CTGCAACAGGAAGCGTTTACCAAGATGGGGTGGGAGGGGGTGGTGGCGTC
AACGCTCACCATCATGGCTCTCTTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig16173:396..1822-

>mRNA_H-paniculata_contig16173.3555.1 ID=mRNA_H-paniculata_contig16173.3555.1|Name=mRNA_H-paniculata_contig16173.3555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig16173:396..1822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGAGGAAAGCAAAAAGGAATATCGATACGTGAAAGAAAGGAACCA
AGAGATGGAGAGAGTGGTGGAGGCTCTCCGCAAGACCATCATGCGACAGG
CAGAACTTTCCAGTCAGCGACAAGACCACCATCAACAAGATGCTCGAGGA
AAGCAAAAAGGAATATCGATACGTGAAAGAAAGGAACCAAGAGATGGAGA
GAGTGGTGGAGGCTCTCCGCAAGACCATCATGCGACAGGCAGAACTTTCC
AGTCAGCGACAAGACCACCATCAACAAGGCCAACAACGCCCCCCGACACA
CGCCTACCGTGGAGGTTCCAGCCGCCCCCAGCCACAACAACACTACCACC
ACCCTCAACCCTTGGTCGGAAATGCCGGAGGCACCCGGGGAAATTCCTCT
GCAACAGGAAGCGTTTACCAAGATGGGGTGGGAGGGGGTGGTGGCGTCAA
CGCTCACCATCATGGCTCTCTTAGCGCCAACAACGCCCCCCGACACACGC
CTACCGTGGAGGTTCCAGCCGCCCCCAGCCACAACAACACTACCACCACC
CTCAACCCTTGGTCGGAAATGCCGGAGGCACCCGGGGAAATTCCTCTGCA
ACAGGAAGCGTTTACCAAGATGGGGTGGGAGGGGGTGGTGGCGTCAACGC
TCACCATCATGGCTCTCTTAGC
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