mRNA_H-paniculata_contig16167.3554.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16167.3554.1
Unique NamemRNA_H-paniculata_contig16167.3554.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.850e-17
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    7 RDITALDPGRPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQ 171
            RDI+ LDPG PS LP +PD KVDI SLTWEDKERVLRLLFAKINN+Q      P+
Sbjct:  363 RDISVLDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQGYVDTTPE 417
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A0M0JRH7_9EUKA (Flagellar basal body protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRH7_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 9.100e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 RRRDITALDPGRPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQP 174
            RR  + AL   +PS LP++PD  VDIR LTW+D+ERVLRLLFAKINN        P P
Sbjct:  361 RRGLLPALGSSKPSNLPSNPDEHVDIRELTWDDRERVLRLLFAKINNAAPFQPMPPHP 418
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A836CKC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.530e-10
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   40 SCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQPH 177
            S LP DPDA ++++ L WED+ERVLRLLFAKINN+Q R    P PH
Sbjct:  433 SALPLDPDAHIELQELGWEDRERVLRLLFAKINNVQSRVDAMP-PH 477
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S3ES86_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ES86_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.440e-10
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   13 ITALDPGRPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQP 174
            + AL   +PS LP   D  VDIR LTW+D+ERVLRLLFAKINN        P P
Sbjct:   49 LPALVAVKPSNLPTSADEHVDIRDLTWDDRERVLRLLFAKINNASPFQQMPPHP 102
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S4IE21_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IE21_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.360e-9
Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   34 RPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQP 174
            RPS LP   D  +DIR LTWED+ERVLRLLFAKINN        P P
Sbjct:  383 RPSNLPTSADEHIDIRDLTWEDRERVLRLLFAKINNASPFQPMPPHP 429
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-9
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   37 PSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRP 168
            PS LP DP AKVD++ LT ED+ERVLRLLFAKINN+Q +    P
Sbjct:  432 PSKLPPDPSAKVDLKDLTLEDRERVLRLLFAKINNVQGQVEALP 475
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S4FCI4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI4_CHRCT)

HSP 1 Score: 60.1 bits (144), Expect = 4.750e-9
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   34 RPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRP 168
            RPS LP   + +VDIR LTWED+ERVLRLLFAKINN    +   P
Sbjct:  374 RPSNLPQSAEERVDIRDLTWEDRERVLRLLFAKINNSTPLHSMPP 418
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S2WKV3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKV3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.600e-8
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 RRDITALDPGRPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQ 171
            R+D+    P   S LP  P  KV +  LTW D+E+VLRLLFAKIN +Q      P+
Sbjct:   37 RQDLMFSQPIATSQLPVSPSTKVQLSDLTWMDREKVLRLLFAKINAVQRTVRNMPE 92
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S4KH05_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KH05_GUITH)

HSP 1 Score: 54.3 bits (129), Expect = 7.050e-8
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   58 PDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQP 174
            P+ KVDI+ L WEDKERVLR+LFAKIN  Q+      QP
Sbjct:   26 PNQKVDIKDLVWEDKERVLRILFAKINQSQMPSNSHNQP 64
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BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Match: A0A7S4KH02_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KH02_GUITH)

HSP 1 Score: 54.3 bits (129), Expect = 5.000e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   58 PDAKVDIRSLTWEDKERVLRLLFAKINNIQVRYGQRPQP 174
            P+ KVDI+ L WEDKERVLR+LFAKIN  Q+      QP
Sbjct:  244 PNQKVDIKDLVWEDKERVLRILFAKINQSQMPSNSHNQP 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16167.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG7_ECTSI1.850e-1770.91Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A0M0JRH7_9EUKA9.100e-1256.90Flagellar basal body protein n=1 Tax=Chrysochromul... [more]
A0A836CKC3_9STRA1.530e-1063.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3ES86_9EUKA3.440e-1055.56Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4IE21_9EUKA1.360e-961.70Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2UZS8_9STRA1.370e-965.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4FCI4_CHRCT4.750e-962.22Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S2WKV3_9STRA3.600e-846.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4KH05_GUITH7.050e-861.54Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S4KH02_GUITH5.000e-761.54Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16167contigH-paniculata_contig16167:375..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.3495054-CDS-H-paniculata_contig16167:374..5571622929291.3495054-CDS-H-paniculata_contig16167:374..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16167 375..557 -
1691480803.3673494-CDS-H-paniculata_contig16167:374..5571691480803.3673494-CDS-H-paniculata_contig16167:374..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16167 375..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16167.3554.1prot_H-paniculata_contig16167.3554.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16167 375..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16167.3554.1

>prot_H-paniculata_contig16167.3554.1 ID=prot_H-paniculata_contig16167.3554.1|Name=mRNA_H-paniculata_contig16167.3554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
RRRDITALDPGRPSCLPADPDAKVDIRSLTWEDKERVLRLLFAKINNIQV
RYGQRPQPHT*
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mRNA from alignment at H-paniculata_contig16167:375..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16167.3554.1 ID=mRNA_H-paniculata_contig16167.3554.1|Name=mRNA_H-paniculata_contig16167.3554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig16167:375..557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCAGAGACATCACGGCGCTAGACCCTGGCCGGCCGTCTTGCCTGCC
TGCGGATCCGGATGCCAAGGTGGACATTCGATCTCTCACTTGGGAAGATA
AGGAAAGAGTGCTGAGGTTACTCTTCGCCAAGATCAACAACATACAGGTG
AGATATGGACAACGACCGCAGCCACATACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16167:375..557-

>mRNA_H-paniculata_contig16167.3554.1 ID=mRNA_H-paniculata_contig16167.3554.1|Name=mRNA_H-paniculata_contig16167.3554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig16167:375..557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCAGAGACATCACGGCGCTAGACCCTGGCCGGCCGTCTTGCCTGCC
TGCGGATCCGGATGCCAAGGTGGACATTCGATCTCTCACTTGGGAAGATA
AGGAAAGAGTGCTGAGGTTACTCTTCGCCAAGATCAACAACATACAGGTG
AGATATGGACAACGACCGCAGCCACATACCTGACGGCGCAGAGACATCAC
GGCGCTAGACCCTGGCCGGCCGTCTTGCCTGCCTGCGGATCCGGATGCCA
AGGTGGACATTCGATCTCTCACTTGGGAAGATAAGGAAAGAGTGCTGAGG
TTACTCTTCGCCAAGATCAACAACATACAGGTGAGATATGGACAACGACC
GCAGCCACATACCTGA
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