mRNA_H-paniculata_contig16157.3547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16157.3547.1
Unique NamemRNA_H-paniculata_contig16157.3547.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 3.020e-114
Identity = 161/241 (66.80%), Postives = 197/241 (81.74%), Query Frame = 2
Query:  149 VRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYIGSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMPTPRALEAVSVAEKPKDD 871
            VRKIEK  GK++FWAESL++T+ MAFGGGILAPFLLGKPP+ FVNDL+VPLVA  WFV+NRAEG + A +NTPIMK V+LVL+E  R N+ CG+VV + S+L+  K+YPI LWGP+LLGT+ GCGGLFLPLDKGL+G+KNGAPWPLQSAFYGS+FF+L V+DP +G YLRDAA+ F++G+  V  R IV  F C+ ALAQT+  P FNPFTP HNV+Y VTG+P P A+ AV+  EKPK D
Sbjct:   59 VRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEAV-AVATGEKPKAD 298          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.750e-76
Identity = 127/248 (51.21%), Postives = 156/248 (62.90%), Query Frame = 2
Query:   89 LTDLGIYIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYIGSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMPTPRA 832
            L DL     V +    LVG  R ++    K ++WA+SL+LTF M FGGGI+APFLLGKPP+  +NDLLV  V G+W V NR E  V A L  P++   +  +AE  R N  C +V  A   + A KYYPIP WGPVLLGTIAGC G+FLP DKGL  +K G+PWPLQSAFYGSL FHL+ HDP++    R A + +     A  AR  VVAFF   A  QT  GP FNPF+P H V Y ++G+  P A
Sbjct:   15 LQDLPYMPEVCLFIYALVGAAR-VKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHV----RAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGA 257          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A835Z4Q5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q5_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.290e-42
Identity = 88/231 (38.10%), Postives = 126/231 (54.55%), Query Frame = 2
Query:  134 CLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAE-GRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYP----IPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPY-IGSYLRDAASYFIEGEA--AVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLY 802
            C   QVR    + G+   W ES++L    AFGG +LA  LL +PP     D  +PL+  +W++ N +    + A L  P++  + +VL E  R    C VV  A   LRA+   P    +P +GP++ G ++ CGGLF P D+GL+ ++ G PWPLQSA Y + F+HL VH+   +G +LR    +++ G A  A  AR  V A F IC   QT +GP FN   P H  +Y
Sbjct:   14 CSYRQVR----AAGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLR----HYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVY 236          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 148 bits (373), Expect = 7.400e-36
Identity = 83/219 (37.90%), Postives = 119/219 (54.34%), Query Frame = 2
Query:  188 WAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMP-TPRALE 838
            W   L+L F   F GG + P   G+ P+ FVNDLLVPLV  +W++ +    RV   L T   K +++ L E  R  +    V  A + +    YYPI + GPVL+GT++G  G F+P D+G+  +  G P  LQ+     LF+HL  HDP + G+YLR   +  +     +  + + V FF   A    V GP +NPFTP H +LY+V G+P +P  LE
Sbjct:   53 WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYT--RVGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENL--KALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIPYSPATLE 267          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.340e-33
Identity = 87/267 (32.58%), Postives = 135/267 (50.56%), Query Frame = 2
Query:  107 YIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNV----LYRVTGMP-------TPRALEAVSVAEKPKDD 871
            Y+   +T  C+  + +  +  G     +  +L+ T     G G++ P L+  PP+F  NDLLV  +   + V+   +  V  F+ TP +   + +L+  +R N  C +V  A++    S YYPI L+GP+++G   G GG  +P DKGL  +    PW +Q  F  + F+H++ +D YI G  +R A    +E       R+I V F  +  + QT + P FNPFTPAH      LY VTGMP        PR+  +   A+K KD+
Sbjct:   24 YLFSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTT----GSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALG--LENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGMPKTAITIEVPRSTPSTD-ADKAKDN 283          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.620e-30
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 2
Query:  263 PPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMP-------TPRALEAVSVAEKPKDD 871
            PP+F  NDLLV  +   +  +   +  V  F+ TP +   + +L+  +R N  C +V  A++    S YYPI L+GP+++G   G GG  +P DKGL  +    PW +Q  F  + F+H++ +D YI G  +R A    +E       R+I V F  +  + QT + P FNPFTPAH  LY VTGMP        PR+  +   A+K KD+
Sbjct:    4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALG--LENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPKTAITIEVPRSTPSTD-ADKAKDN 211          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6U2DME3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2DME3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.660e-17
Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 2
Query:   86 SLTDLGIYIVVDITHPCLVG-------QVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLN-TPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPY 640
            S++D  +    +I + C+ G       +V           F   SLIL     FGGG+  P  L   P+   ND L PL     F  +     V  F+N + I+K V +VL E  RG       V A   +  S ++  PL+GP+  GTIAGCGG FLPL+KGL  +K G   P+ +A  G+   HL ++ P+
Sbjct:   19 SMSDFLLVSSKEIRYLCIFGYTFLHGHRVFSALDPNSPPSFKFVSLILA---CFGGGVFVPIFLNMLPVPIANDSL-PLGVIVSFTIHNYFPIVRKFMNVSDILKVVFVVLFETLRGMVVTNFTVAAGETIPPS-FFSFPLFGPIFCGTIAGCGGAFLPLNKGLDPIKKGLAPPMITAGIGATMLHLFLNTPF 206          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A7S1SEQ8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SEQ8_ALECA)

HSP 1 Score: 91.7 bits (226), Expect = 8.500e-17
Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   86 SLTDLGIYIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMK--HVVLVLAECA-RGNTTCGVVVTAMSVLRA------SKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLM 625
            +LTD   + V ++T    + +V +  +      FW ++L+ T   AFGGG LAP ++G  P+    +     +  +W+VT+        +      K  H+ L +  C  +     G +  A   +        S+Y+ +P+ GP++ G + GCGG FLP DKGL+ +  G  WP+ +AF+G++ ++ +
Sbjct:   77 TLTDKAPW-VWEVTVLGFMLKVSQDVREQVTNFFWPKALVTTAIAAFGGGFLAPLIVGHCPVPLREETFAWFLVFSWYVTHHVPFVSATWCEIARSKPGHIALTIFFCIFKTQQIVGSIEVAAKAVEHEPLMPHSRYFFVPMAGPLVCGFLGGCGGAFLPFDKGLRPISEGKQWPVTAAFFGTVIYYFL 264          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A7S1VWR2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VWR2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-16
Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  119 DITHPCLVGQV----RKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLN-TPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVH 631
            ++ + C++G       K+ K+  K    +  LI       GGGIL P  L K P+   ND   P+     F  +     V   +N +P++K +V+V  E  R        + A + + A   +  PL+GP++ GT+AGCGG FLP++KGL  + +G   P+ SAF G+   HL ++
Sbjct:   33 EVLYMCMLGYTFLHGSKVFKAVPKTASVSYKLISMILACTGGGILVPIFLNKVPVPLANDAY-PIAILTSFAIHYYFPVVAEVMNLSPVVKSLVVVFYELIRAKVVLTFTLAASAAI-APTTFSFPLFGPIMCGTVAGCGGAFLPMNKGLDPITSGLQPPMSSAFVGATLVHLFLN 206          
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6V2QAP0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QAP0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.950e-16
Identity = 53/189 (28.04%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   86 SLTDLGIYIVV---DITHPCLVGQV----RKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVH 631
            + +D+  ++++   ++ + C++G       K+  +   +   +   I       GGGIL P ++   PI   ND  +  +  ++ + +        F  +PI K +V+V  E  R +    + + A S + AS  +P P++GP+  G IAGCGG FLPL+KGL  +K G   P+ SA   + F HL ++
Sbjct:   21 ATSDIAQFLILNSMEVKYMCMLGYTFMHGAKVFSAVDSKAATSYRFINMIMACTGGGILVPIIINGIPIPMANDAYIIAILTSFAIHHYFPVIRDVFKISPIFKSLVVVFYETLRASVVVTLTLAAGSKIPAS-IFPFPVFGPIACGAIAGCGGAFLPLNKGLDPIKKGLASPMLSALVAATFLHLFLN 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H0_ECTSI3.020e-11466.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0I7_9STRA1.750e-7651.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4Q5_9STRA2.290e-4238.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9CX56_9STRA7.400e-3637.90Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6H5JUV5_9PHAE4.340e-3332.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FML9_ECTSI1.620e-3036.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U2DME3_9STRA3.660e-1733.68Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1SEQ8_ALECA8.500e-1727.51Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1VWR2_9STRA1.190e-1631.25Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6V2QAP0_9STRA2.950e-1628.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16157contigH-paniculata_contig16157:6..3791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score314.7
Seed ortholog evalue3.4e-83
Seed eggNOG ortholog2880.D7G2H0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BW3U@1,2SEWS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005940.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1417
Cds size657
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.5936148-UTR-H-paniculata_contig16157:5..5481622929290.5936148-UTR-H-paniculata_contig16157:5..548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16157 6..548 -
1691480803.0474954-UTR-H-paniculata_contig16157:5..5481691480803.0474954-UTR-H-paniculata_contig16157:5..548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16157 6..548 -
1622929290.6659-UTR-H-paniculata_contig16157:3574..37911622929290.6659-UTR-H-paniculata_contig16157:3574..3791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16157 3575..3791 -
1691480803.1009674-UTR-H-paniculata_contig16157:3574..37911691480803.1009674-UTR-H-paniculata_contig16157:3574..3791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16157 3575..3791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.6042728-CDS-H-paniculata_contig16157:548..7741622929290.6042728-CDS-H-paniculata_contig16157:548..774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 549..774 -
1691480803.061322-CDS-H-paniculata_contig16157:548..7741691480803.061322-CDS-H-paniculata_contig16157:548..774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 549..774 -
1622929290.6184266-CDS-H-paniculata_contig16157:2084..21761622929290.6184266-CDS-H-paniculata_contig16157:2084..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2085..2176 -
1691480803.068513-CDS-H-paniculata_contig16157:2084..21761691480803.068513-CDS-H-paniculata_contig16157:2084..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2085..2176 -
1622929290.6313462-CDS-H-paniculata_contig16157:2452..25511622929290.6313462-CDS-H-paniculata_contig16157:2452..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2453..2551 -
1691480803.0763602-CDS-H-paniculata_contig16157:2452..25511691480803.0763602-CDS-H-paniculata_contig16157:2452..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2453..2551 -
1622929290.6412776-CDS-H-paniculata_contig16157:2855..30111622929290.6412776-CDS-H-paniculata_contig16157:2855..3011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2856..3011 -
1691480803.0840287-CDS-H-paniculata_contig16157:2855..30111691480803.0840287-CDS-H-paniculata_contig16157:2855..3011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 2856..3011 -
1622929290.651552-CDS-H-paniculata_contig16157:3490..35741622929290.651552-CDS-H-paniculata_contig16157:3490..3574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 3491..3574 -
1691480803.0921042-CDS-H-paniculata_contig16157:3490..35741691480803.0921042-CDS-H-paniculata_contig16157:3490..3574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16157 3491..3574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16157.3547.1prot_H-paniculata_contig16157.3547.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16157 549..3574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16157.3547.1

>prot_H-paniculata_contig16157.3547.1 ID=prot_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTP
IMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAG
CGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYIGSYLRDAA
SYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGM
PTPRALEAVSVAEKPKDD*
back to top

mRNA from alignment at H-paniculata_contig16157:6..3791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16157.3547.1 ID=mRNA_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig16157:6..3791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAAACGGCGCGTACAAGTAGATATAAGAGTGTTGAACGTATGCGACT TTTACTCGTTTTCTTTCCGTCGTTTTCTTTTGTAGAGTTTAACTGACCTT GGCATATACATTGTTGTTGACATAACTCACCCATGCTTGGTTGGTCAGGT GCGAAAAATTGAGAAGTCTGGTGGAAAAGAGCTGTTTTGGGCCGAGTCTC TGATCCTGACTTTTTTCATGGCTTTCGGTGGCGGTATCCTTGCGCCATTC CTCCTCGGCAAGCCCCCCATCTTTTTCGTCAACGACCTGCTCGTTCCTTT GGTGAGTAGCCCATGTGTAGCTTTCCACCTAGTGTATTCACACATAGTTC ACGGAAGATAAACTTTCCTGGAGTCTAGTAGTTGGAACCAAGGGTTGGAA CGGCGACGAGGGACAAACTGTTACCTACTATAGGGTTGTACATCACTGAG CGCTGTTTGTGGTGTGTAATTTTTTCAACAGCGGCACAGCTCATGTTGTT CCACTCCTAAATCTGTTGCCGGTGACAGAGACCATGAAGAGTGTCGTTGA CTATATTTACCTTGCAGAACAAGCAAGAATTTCGTGAAGCGGTGTAATAT ATAGCTCTACTGAAGTGCAGTTATGTGTGGTGCGGCGCCACGAGAGGCCT CCACTTCCGCTTTTCCTGCTCCGTAAAATCTACTCAAGCACGAGAAAGTC AGAGGGGAGCGCAGCATCCTTCATGATGTCTATGCGAATCTAAGAGATGG CAAACACGTTTTCCATTGCATTTGGGGCAGGTTGCCGGGGCGTGGTTCGT GACGAATAGGGCTGAGGGTCGGGTGACGGCATTTCTCAACACCCCAATCA TGAAGCATGTCGTGCTTGTGCTGGCAGAGTGCGCCCGAGGCAATACCACG TGCGGCGTAGTAGTGACTGCGATGTCCGTGCTCAGGGTGAGTGACTCATG ACTGAATGTATGAAGAGCGATCAAATCTGCGGCACCTATCTATTTGCATG TGTTATTGCCTCAACGTTGTTGGGTTGCCTTGAATTCGTCGACACTTTGC CACACAATACCATTGCGCACGACCGAGAAGAGATGTGCATGCCTGCTCTC GCACGTGAAGCTCACACGCATAATGGAGCGTGATCGCACGTGTTCAGCCT CTATGTCCGTAATTGCTTCAACGTCTGTAGTATATCTGTTTGATCCTCGA ATTCTCTCCTCCCAAACTACTTAATCGTGCCCACATTTAGGCAAGCAAAT ACTACCCCATCCCGCTTTGGGGACCAGTGCTGCTGGGCACGATTGCCGGC TGCGGGGGACTCTTCTTGCCTCTCGATAAGGGACTGCAGGTATATCCGTT TGTGGTGCTTCGTCGTTGACATGACGTTGAGACCTGACATATTTGCGAGT CTTTGCCCGGGAAGCAGTGAAGTAAAGGCACTTTGCGACCTTGTCTGCTC TCTTCGTGGGCATATGTAGGTGCCCCTAAGCCCGACCTTCGTCACGTTCT ATCGTAGAGTGCATTCGCCCAAATCGTCACACTGCATTGCTTGTGCTGTG ACTGATTACTGCGCCTCGTACATAACTTGATATTGGTTTTTGTGCTTCGT GTATGGCACAATCAGGGGGTCAAGAACGGTGCTCCATGGCCTCTGCAGTC TGCTTTCTACGGTTCTCTGTTTTTCCACCTCATGGTGCATGACCCCTACA TTGGCTCGTGAGTATGTCCCACCGTATTGCTCAACTCCAGAGTGTAGCGT TGTGCAGCTGGCGTGATGCGCCCAAAGCTGCTAAATGCACATTGTGTATA CCTGGTTGTGTTTCGCATACGGATAACAGGGCACTAGAAGAAATGAAAAA TACAGCTTATCGAGAGATTGGCAGTAAGGAGCGTCAGCCGTTTGCCACTG CTGCATTATGGTTTACTTGAATAGTGTTGGAACAGAAGGCATTGCTTATT TCTGTGATGCTTGGTTGTACAATAATTGAATATTTGCGCAATTGGTGGGA GCCTTTGCGCTTAGCCTGTGCGAGCGCTTAGCTCTGCCTCGCCCCCCAAG CGTCTAAAGGCGCATGGCGAACCCCAGAACAGATCGAGAACGTCCAAAAT GAAATCCCACTGGTGCTTGATACGTTTTGCTTTTTGCCTCCCTTCAGTTT GTGATCCACTCTAATGTTGTTAGGCCATCTCCTATGGTGTCAAGAAACCT TGCAGTCAAAATCGTAAAATTCCATTTTTTTACTGTGAAATAGACTGATT GGGAAACATTAATAGGTAATTTTGTCGGGTCGGGCCTGACTCGAAAACAT TAAATGTATAAGTTAATTTTTTTATGGTGTTTTGCTAATGGCGACTAAGT TGAGAGAATTTCGAACATACGTTCTCGTTCAGCACACCCTCATCCTGGGA AAGCGGACCATGATTTATCAAGACAAACCCTTTCGTGGAATGGGTGGGGA AGGAAATGGGGGCTCAGGGATTACATTCGGGTATGTGCAAGACACAGTGG ATTATTCTATAGAATGTATCACAATGGTACGCTTGTACGTCTGTTGAGAA CGGTGGGACCCTGTACTGAGCGAGAGGTACAAGAAGGCGGTGCAGCTATA CAAGGATTTCGCCGTTGACAGCTTTCATAAGGCGGCTGGGCTCACACCTT GGATTGTGTACATGCTTCGTACTGGCATCTGTGACCAGCGCGGGTATTTT ACTGTGGACTATGAAACATCATCCAGGAGAGCACGCCTGTGTATCTCGGT GAAGTCTCATTTTCATGGTTGCACGGGGATCTCATCCTCCAGTTAAAATA TTGCGAAGTTTATTACTCGGGGATCTGTTAATCCTCCTCGATCATGAATT CGTGTAAAGAAATGTGTTTTCGACGCCGTAAAATGATGGATAAAAAATCT CTTGTAAGAAAATTGGAAGTTCGTGATTTTGATTGAAGTTTTTCGACACC GTAGGAGATGGCCTTAGTAAGTCTCCCCCCCCCCCCCTGCGGCGTGCGTA TCCTATCCACCCGAAAGGTACCTTCGCGACGCGGCCAGTTACTTCATCGA AGGGGAGGCGGCAGTCGTGGCGCGCGTTATTGTAGTGGCATTCTTCTGCA TTTGTGCCTTGGCTCAGACTGTATGGGGGCCGATGTTCAACCCTTTCACC CCCGCGCACAACGTACTGTACAGGGTGACTGGTATGCCGACGCCGCGGGC CCTTGAGGCAGTGTCAGTTGCCGAAAAGCCGAAGGATGATTAATTGGATT GGCTGCTGGTTAAATAAAAGAGGCTTGCCGAGAGTTTCGGCATTTACTTG ACATTGCTCGATGGAGTAGTACTTTCCGTGGGGGGTCATACGTTGTTGGC AGGGTGTGTGTTGTAGCTTTTGAACCCACGAGGGTTTACAGTACTACCTG ATAGTCGTTCCACGATATTTTGCCTTGTTTTCGCAAGCATATTTTTACCC CACCTACAACCAACTTGACGTCTTCTATAGTGCCGAGTAGAGTGCTTTTT GCTTTGTCGCTCGTCCTCTCTCTCTCTCTCCTTCTCTGAGGCATCAATCC TAACTTTTATTACGACTTGGCACGGTTCCAATCGTCTTCGTCAAATAGAA AGCAGGGTGGGCGATGACGCGATTGCATGCTACTGTTGCCGCAGTGTACT ATACTGTCTGTATTGTGCCACGGTCTAATACTGCATGATGGGAATGTTGT TCGATGTTCTTTGCTGTTGAAAGCTGGCACGGCTTCCTCCTTCGACTCTC TTCCTCGGAGTCCAGGCGTGCACTGAAACAAGATCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16157:6..3791-

>mRNA_H-paniculata_contig16157.3547.1 ID=mRNA_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig16157:6..3791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCGGTGGCGGTATCCTTGCGCCATTCCTCCTCGGCAAGCCCCC
CATCTTTTTCGTCAACGACCTGCTCGTTCCTTTGATGGCTTTCGGTGGCG
GTATCCTTGCGCCATTCCTCCTCGGCAAGCCCCCCATCTTTTTCGTCAAC
GACCTGCTCGTTCCTTTGGTTGCCGGGGCGTGGTTCGTGACGAATAGGGC
TGAGGGTCGGGTGACGGCATTTCTCAACACCCCAATCATGAAGCATGTCG
TGCTTGTGCTGGCAGAGTGCGCCCGAGGCAATACCACGTGCGGCGTAGTA
GTGACTGCGATGTCCGTGCTCAGGGTTGCCGGGGCGTGGTTCGTGACGAA
TAGGGCTGAGGGTCGGGTGACGGCATTTCTCAACACCCCAATCATGAAGC
ATGTCGTGCTTGTGCTGGCAGAGTGCGCCCGAGGCAATACCACGTGCGGC
GTAGTAGTGACTGCGATGTCCGTGCTCAGGGCAAGCAAATACTACCCCAT
CCCGCTTTGGGGACCAGTGCTGCTGGGCACGATTGCCGGCTGCGGGGGAC
TCTTCTTGCCTCTCGATAAGGGACTGCAGGCAAGCAAATACTACCCCATC
CCGCTTTGGGGACCAGTGCTGCTGGGCACGATTGCCGGCTGCGGGGGACT
CTTCTTGCCTCTCGATAAGGGACTGCAGGGGGTCAAGAACGGTGCTCCAT
GGCCTCTGCAGTCTGCTTTCTACGGTTCTCTGTTTTTCCACCTCATGGTG
CATGACCCCTACATTGGCTCGGGGTCAAGAACGGTGCTCCATGGCCTCTG
CAGTCTGCTTTCTACGGTTCTCTGTTTTTCCACCTCATGGTGCATGACCC
CTACATTGGCTCGTACCTTCGCGACGCGGCCAGTTACTTCATCGAAGGGG
AGGCGGCAGTCGTGGCGCGCGTTATTGTAGTGGCATTCTTCTGCATTTGT
GCCTTGGCTCAGACTGTATGGGGGCCGATGTTCAACCCTTTCACCCCCGC
GCACAACGTACTGTACAGGGTGACTGGTATGCCGACGCCGCGGGCCCTTG
AGGCAGTGTCAGTTGCCGAAAAGCCGAAGGATGATTAAGTACCTTCGCGA
CGCGGCCAGTTACTTCATCGAAGGGGAGGCGGCAGTCGTGGCGCGCGTTA
TTGTAGTGGCATTCTTCTGCATTTGTGCCTTGGCTCAGACTGTATGGGGG
CCGATGTTCAACCCTTTCACCCCCGCGCACAACGTACTGTACAGGGTGAC
TGGTATGCCGACGCCGCGGGCCCTTGAGGCAGTGTCAGTTGCCGAAAAGC
CGAAGGATGATTAA
back to top