mRNA_H-paniculata_contig16157.3547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI) HSP 1 Score: 347 bits (890), Expect = 3.020e-114 Identity = 161/241 (66.80%), Postives = 197/241 (81.74%), Query Frame = 2
Query: 149 VRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYIGSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMPTPRALEAVSVAEKPKDD 871
VRKIEK GK++FWAESL++T+ MAFGGGILAPFLLGKPP+ FVNDL+VPLVA WFV+NRAEG + A +NTPIMK V+LVL+E R N+ CG+VV + S+L+ K+YPI LWGP+LLGT+ GCGGLFLPLDKGL+G+KNGAPWPLQSAFYGS+FF+L V+DP +G YLRDAA+ F++G+ V R IV F C+ ALAQT+ P FNPFTP HNV+Y VTG+P P A+ AV+ EKPK D
Sbjct: 59 VRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEAV-AVATGEKPKAD 298
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA) HSP 1 Score: 250 bits (638), Expect = 1.750e-76 Identity = 127/248 (51.21%), Postives = 156/248 (62.90%), Query Frame = 2
Query: 89 LTDLGIYIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYIGSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMPTPRA 832
L DL V + LVG R ++ K ++WA+SL+LTF M FGGGI+APFLLGKPP+ +NDLLV V G+W V NR E V A L P++ + +AE R N C +V A + A KYYPIP WGPVLLGTIAGC G+FLP DKGL +K G+PWPLQSAFYGSL FHL+ HDP++ R A + + A AR VVAFF A QT GP FNPF+P H V Y ++G+ P A
Sbjct: 15 LQDLPYMPEVCLFIYALVGAAR-VKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHV----RAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGA 257
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A835Z4Q5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q5_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.290e-42 Identity = 88/231 (38.10%), Postives = 126/231 (54.55%), Query Frame = 2
Query: 134 CLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAE-GRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYP----IPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPY-IGSYLRDAASYFIEGEA--AVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLY 802
C QVR + G+ W ES++L AFGG +LA LL +PP D +PL+ +W++ N + + A L P++ + +VL E R C VV A LRA+ P +P +GP++ G ++ CGGLF P D+GL+ ++ G PWPLQSA Y + F+HL VH+ +G +LR +++ G A A AR V A F IC QT +GP FN P H +Y
Sbjct: 14 CSYRQVR----AAGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLR----HYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVY 236
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA) HSP 1 Score: 148 bits (373), Expect = 7.400e-36 Identity = 83/219 (37.90%), Postives = 119/219 (54.34%), Query Frame = 2
Query: 188 WAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMP-TPRALE 838
W L+L F F GG + P G+ P+ FVNDLLVPLV +W++ + RV L T K +++ L E R + V A + + YYPI + GPVL+GT++G G F+P D+G+ + G P LQ+ LF+HL HDP + G+YLR + + + + + V FF A V GP +NPFTP H +LY+V G+P +P LE
Sbjct: 53 WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYT--RVGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENL--KALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIPYSPATLE 267
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE) HSP 1 Score: 139 bits (351), Expect = 4.340e-33 Identity = 87/267 (32.58%), Postives = 135/267 (50.56%), Query Frame = 2
Query: 107 YIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNV----LYRVTGMP-------TPRALEAVSVAEKPKDD 871
Y+ +T C+ + + + G + +L+ T G G++ P L+ PP+F NDLLV + + V+ + V F+ TP + + +L+ +R N C +V A++ S YYPI L+GP+++G G GG +P DKGL + PW +Q F + F+H++ +D YI G +R A +E R+I V F + + QT + P FNPFTPAH LY VTGMP PR+ + A+K KD+
Sbjct: 24 YLFSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTT----GSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALG--LENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGMPKTAITIEVPRSTPSTD-ADKAKDN 283
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.620e-30 Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 2
Query: 263 PPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPYI-GSYLRDAASYFIEGEAAVVARVIVVAFFCICALAQTVWGPMFNPFTPAHNVLYRVTGMP-------TPRALEAVSVAEKPKDD 871
PP+F NDLLV + + + + V F+ TP + + +L+ +R N C +V A++ S YYPI L+GP+++G G GG +P DKGL + PW +Q F + F+H++ +D YI G +R A +E R+I V F + + QT + P FNPFTPAH LY VTGMP PR+ + A+K KD+
Sbjct: 4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALG--LENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPKTAITIEVPRSTPSTD-ADKAKDN 211
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6U2DME3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2DME3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 3.660e-17 Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 2
Query: 86 SLTDLGIYIVVDITHPCLVG-------QVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLN-TPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVHDPY 640
S++D + +I + C+ G +V F SLIL FGGG+ P L P+ ND L PL F + V F+N + I+K V +VL E RG V A + S ++ PL+GP+ GTIAGCGG FLPL+KGL +K G P+ +A G+ HL ++ P+
Sbjct: 19 SMSDFLLVSSKEIRYLCIFGYTFLHGHRVFSALDPNSPPSFKFVSLILA---CFGGGVFVPIFLNMLPVPIANDSL-PLGVIVSFTIHNYFPIVRKFMNVSDILKVVFVVLFETLRGMVVTNFTVAAGETIPPS-FFSFPLFGPIFCGTIAGCGGAFLPLNKGLDPIKKGLAPPMITAGIGATMLHLFLNTPF 206
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A7S1SEQ8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SEQ8_ALECA) HSP 1 Score: 91.7 bits (226), Expect = 8.500e-17 Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 2
Query: 86 SLTDLGIYIVVDITHPCLVGQVRKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMK--HVVLVLAECA-RGNTTCGVVVTAMSVLRA------SKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLM 625
+LTD + V ++T + +V + + FW ++L+ T AFGGG LAP ++G P+ + + +W+VT+ + K H+ L + C + G + A + S+Y+ +P+ GP++ G + GCGG FLP DKGL+ + G WP+ +AF+G++ ++ +
Sbjct: 77 TLTDKAPW-VWEVTVLGFMLKVSQDVREQVTNFFWPKALVTTAIAAFGGGFLAPLIVGHCPVPLREETFAWFLVFSWYVTHHVPFVSATWCEIARSKPGHIALTIFFCIFKTQQIVGSIEVAAKAVEHEPLMPHSRYFFVPMAGPLVCGFLGGCGGAFLPFDKGLRPISEGKQWPVTAAFFGTVIYYFL 264
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A7S1VWR2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VWR2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.190e-16 Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 2
Query: 119 DITHPCLVGQV----RKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLN-TPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVH 631
++ + C++G K+ K+ K + LI GGGIL P L K P+ ND P+ F + V +N +P++K +V+V E R + A + + A + PL+GP++ GT+AGCGG FLP++KGL + +G P+ SAF G+ HL ++
Sbjct: 33 EVLYMCMLGYTFLHGSKVFKAVPKTASVSYKLISMILACTGGGILVPIFLNKVPVPLANDAY-PIAILTSFAIHYYFPVVAEVMNLSPVVKSLVVVFYELIRAKVVLTFTLAASAAI-APTTFSFPLFGPIMCGTVAGCGGAFLPMNKGLDPITSGLQPPMSSAFVGATLVHLFLN 206
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Match: A0A6V2QAP0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QAP0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.950e-16 Identity = 53/189 (28.04%), Postives = 94/189 (49.74%), Query Frame = 2
Query: 86 SLTDLGIYIVV---DITHPCLVGQV----RKIEKSGGKELFWAESLILTFFMAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPIMKHVVLVLAECARGNTTCGVVVTAMSVLRASKYYPIPLWGPVLLGTIAGCGGLFLPLDKGLQGVKNGAPWPLQSAFYGSLFFHLMVH 631
+ +D+ ++++ ++ + C++G K+ + + + I GGGIL P ++ PI ND + + ++ + + F +PI K +V+V E R + + + A S + AS +P P++GP+ G IAGCGG FLPL+KGL +K G P+ SA + F HL ++
Sbjct: 21 ATSDIAQFLILNSMEVKYMCMLGYTFMHGAKVFSAVDSKAATSYRFINMIMACTGGGILVPIIINGIPIPMANDAYIIAILTSFAIHHYFPVIRDVFKISPIFKSLVVVFYETLRASVVVTLTLAAGSKIPAS-IFPFPVFGPIACGAIAGCGGAFLPLNKGLDPIKKGLASPMLSALVAATFLHLFLN 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16157.3547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16157.3547.1 >prot_H-paniculata_contig16157.3547.1 ID=prot_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MAFGGGILAPFLLGKPPIFFVNDLLVPLVAGAWFVTNRAEGRVTAFLNTPback to top mRNA from alignment at H-paniculata_contig16157:6..3791- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16157.3547.1 ID=mRNA_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig16157:6..3791- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16157:6..3791- >mRNA_H-paniculata_contig16157.3547.1 ID=mRNA_H-paniculata_contig16157.3547.1|Name=mRNA_H-paniculata_contig16157.3547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig16157:6..3791- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |