mRNA_H-paniculata_contig16143.3542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16143.3542.1
Unique NamemRNA_H-paniculata_contig16143.3542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16143.3542.1 vs. uniprot
Match: A0A7S0MF25_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MF25_9CRYP)

HSP 1 Score: 76.6 bits (187), Expect = 2.800e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:   13 KAEVIKNLEWGDAFDIFGRSNIPLLRTHYRSTLRRKLSPASQTFWDARLARDFSFMYSGTSGLAAWFLVYVMAPLLGLGFIRRLV 267
            KA  I+ L++   FDIF ++NI LLR HY + LR  L   S+ FWD ++    SFMYSGTSG+ A F+V V+  +LGLGFI R +
Sbjct:  103 KAAAIQKLKFDQFFDIFAKNNIALLRDHY-AELRPLLLERSREFWDEKVKSLKSFMYSGTSGVLAKFVVRVIFRMLGLGFIHRTI 186
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BLAST of mRNA_H-paniculata_contig16143.3542.1 vs. uniprot
Match: A0A0G4GWP6_VITBC (Methyltransf_12 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWP6_VITBC)

HSP 1 Score: 75.9 bits (185), Expect = 5.210e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   34 LEWGDAFDIFGRSNIPLLRTHYRSTLRRKLSPASQTFWDARLARDFSFMYSGTSGLAAWFLVYVMAPLLGLGFIRRLVKKGVSK 285
            L + + F IF  S+  LLR  Y S LR K+S   Q FWD+ + R  +F+YSG+SG AAW L  V+ PL GL +IR+ V++G ++
Sbjct:  120 LPYEEFFAIFALSDTALLRARYFSQLRPKMSSLGQRFWDSYVYRLKNFLYSGSSGFAAWVLFRVIFPLFGLSWIRKAVERGATR 203
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BLAST of mRNA_H-paniculata_contig16143.3542.1 vs. uniprot
Match: UPI001EE98768 (BtaA family protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE98768)

HSP 1 Score: 50.4 bits (119), Expect = 4.340e-5
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 ILTKKAEVIKNLEWGDAFDIFGRSNIPLLRTHYRSTLRRKLSPASQTFWDARL------ARDFSFMYSGTSGLAAWFL-VYV 225
            +L  K   I+ L++   F +FGR  +   +  Y++ LR+ LS AS+ +WD R        R  SF +  TSG+ AW + +YV
Sbjct:  101 LLELKIAAIRELDYDQFFQMFGRGRLASYKKVYKTKLRKHLSHASRAYWDRRRRMFSGNGRRPSFYFYATSGMFAWLINIYV 182
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BLAST of mRNA_H-paniculata_contig16143.3542.1 vs. uniprot
Match: F0SQI1_RUBBR (Uncharacterized protein n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SQI1_RUBBR)

HSP 1 Score: 49.7 bits (117), Expect = 8.100e-5
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 ILTKKAEVIKNLEWGDAFDIFGRSNIPLLRTHYRSTLRRKLSPASQTFWDARL------ARDFSFMYSGTSGLAAWFL-VYV 225
            +L  K   I+ L++   F +FGR  +   R  Y+  LR+ LS AS+++W+ R        R  SF +  TSG+ AW + +YV
Sbjct:  104 LLELKLAAIRELDYDQFFQMFGRGRLASYRKLYKHKLRKHLSHASRSYWNKRTRMFSGSGRRPSFYFYATSGMFAWLINIYV 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16143.3542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0MF25_9CRYP2.800e-1449.41Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0G4GWP6_VITBC5.210e-1445.24Methyltransf_12 domain-containing protein n=1 Tax=... [more]
UPI001EE987684.340e-534.15BtaA family protein n=1 Tax=Rubinisphaera sp. ICM_... [more]
F0SQI1_RUBBR8.100e-534.15Uncharacterized protein n=1 Tax=Rubinisphaera bras... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16143contigH-paniculata_contig16143:377..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog55529.EKX35615
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein of unknown function (DUF3419)
EggNOG OGs2QQCH@2759,COG5379@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.1162663-CDS-H-paniculata_contig16143:376..6611622929290.1162663-CDS-H-paniculata_contig16143:376..661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16143 377..661 +
1691480802.8601427-CDS-H-paniculata_contig16143:376..6611691480802.8601427-CDS-H-paniculata_contig16143:376..661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16143 377..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16143.3542.1prot_H-paniculata_contig16143.3542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16143 377..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16143.3542.1

>prot_H-paniculata_contig16143.3542.1 ID=prot_H-paniculata_contig16143.3542.1|Name=mRNA_H-paniculata_contig16143.3542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
ILTKKAEVIKNLEWGDAFDIFGRSNIPLLRTHYRSTLRRKLSPASQTFWD
ARLARDFSFMYSGTSGLAAWFLVYVMAPLLGLGFIRRLVKKGVSK
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mRNA from alignment at H-paniculata_contig16143:377..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16143.3542.1 ID=mRNA_H-paniculata_contig16143.3542.1|Name=mRNA_H-paniculata_contig16143.3542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig16143:377..661+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCACAAAAAAGGCGGAGGTTATCAAGAACTTGGAATGGGGAGACGC
CTTTGACATTTTCGGTCGCAGCAATATTCCCCTGTTGCGGACGCACTACC
GCAGCACTCTGCGGAGGAAGCTTAGCCCTGCGTCGCAGACATTCTGGGAT
GCTCGCCTCGCGCGAGACTTCAGCTTCATGTACTCGGGAACGAGCGGGCT
CGCTGCGTGGTTCCTGGTGTATGTGATGGCTCCATTGCTCGGTCTAGGGT
TCATCCGCCGACTGGTTAAGAAAGGAGTTTCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16143:377..661+

>mRNA_H-paniculata_contig16143.3542.1 ID=mRNA_H-paniculata_contig16143.3542.1|Name=mRNA_H-paniculata_contig16143.3542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig16143:377..661+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCACAAAAAAGGCGGAGGTTATCAAGAACTTGGAATGGGGAGACGC
CTTTGACATTTTCGGTCGCAGCAATATTCCCCTGTTGCGGACGCACTACC
GCAGCACTCTGCGGAGGAAGCTTAGCCCTGCGTCGCAGACATTCTGGGAT
GCTCGCCTCGCGCGAGACTTCAGCTTCATGTACTCGGGAACGAGCGGGCT
CGCTGCGTGGTTCCTGGTGTATGTGATGGCTCCATTGCTCGGTCTAGGGT
TCATCCGCCGACTGGTTAAGAAAGGAGTTTCCAAGATACTCACAAAAAAG
GCGGAGGTTATCAAGAACTTGGAATGGGGAGACGCCTTTGACATTTTCGG
TCGCAGCAATATTCCCCTGTTGCGGACGCACTACCGCAGCACTCTGCGGA
GGAAGCTTAGCCCTGCGTCGCAGACATTCTGGGATGCTCGCCTCGCGCGA
GACTTCAGCTTCATGTACTCGGGAACGAGCGGGCTCGCTGCGTGGTTCCT
GGTGTATGTGATGGCTCCATTGCTCGGTCTAGGGTTCATCCGCCGACTGG
TTAAGAAAGGAGTTTCCAAG
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