mRNA_H-paniculata_contig16134.3538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16134.3538.1
Unique NamemRNA_H-paniculata_contig16134.3538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16134.3538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16134contigH-paniculata_contig16134:2180..2819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size640
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16134.3538.1prot_H-paniculata_contig16134.3538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16134 2272..2787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929289.5664258-UTR-H-paniculata_contig16134:2179..22711622929289.5664258-UTR-H-paniculata_contig16134:2179..2271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16134 2180..2271 +
1691480802.5805252-UTR-H-paniculata_contig16134:2179..22711691480802.5805252-UTR-H-paniculata_contig16134:2179..2271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16134 2180..2271 +
1622929289.5988827-UTR-H-paniculata_contig16134:2787..28191622929289.5988827-UTR-H-paniculata_contig16134:2787..2819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16134 2788..2819 +
1691480802.6002324-UTR-H-paniculata_contig16134:2787..28191691480802.6002324-UTR-H-paniculata_contig16134:2787..2819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16134 2788..2819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929289.5796194-CDS-H-paniculata_contig16134:2271..27871622929289.5796194-CDS-H-paniculata_contig16134:2271..2787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16134 2272..2787 +
1691480802.5892456-CDS-H-paniculata_contig16134:2271..27871691480802.5892456-CDS-H-paniculata_contig16134:2271..2787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16134 2272..2787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16134.3538.1

>prot_H-paniculata_contig16134.3538.1 ID=prot_H-paniculata_contig16134.3538.1|Name=mRNA_H-paniculata_contig16134.3538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
MVTSQESGNERTTVALLLWLGLSQMVVCGLVEAGRGGMAETSAVTMPAFR
GVRLGYRETYHSAISNTVCEKRFPVFPTVCRKGKSTRFLARGLNLEIGFH
LGVGFTLWNRCIAGGELVSPIISTSKLRSIFKFCFLSLDSWMEIRINNNT
NMSYRRKLERTHDICFVFLPT*
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mRNA from alignment at H-paniculata_contig16134:2180..2819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16134.3538.1 ID=mRNA_H-paniculata_contig16134.3538.1|Name=mRNA_H-paniculata_contig16134.3538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig16134:2180..2819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAGCAGCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGATTAAAAAAA
AAGAAGAAAAGGTGTACATGTGGTTTATATATTATATGGATTATGGTTAC
CTCGCAAGAGAGTGGTAACGAGAGGACGACTGTAGCATTATTGCTATGGT
TGGGCCTGTCTCAGATGGTTGTGTGTGGGTTGGTTGAAGCTGGCCGTGGA
GGAATGGCGGAGACCTCCGCAGTGACGATGCCGGCGTTCCGGGGGGTTAG
ACTTGGCTACAGAGAGACCTACCACAGTGCAATATCAAATACGGTATGTG
AAAAGAGGTTCCCCGTTTTCCCTACTGTATGTCGTAAGGGGAAGAGCACC
AGGTTTTTGGCTCGCGGCCTAAACCTCGAAATAGGGTTTCACTTGGGCGT
TGGGTTCACGCTATGGAATAGATGTATCGCAGGAGGCGAGCTTGTTTCCC
CCATCATATCAACAAGCAAGCTTCGTAGTATATTCAAGTTTTGTTTTTTG
TCCTTGGATTCTTGGATGGAAATTCGAATTAATAATAACACTAACATGAG
CTATAGACGAAAGCTTGAACGAACTCACGATATTTGTTTTGTTTTTCTGC
CTACTTGAGTCTGCTTGCTGCTGCTGCCACTGCTGTCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig16134:2180..2819+

>mRNA_H-paniculata_contig16134.3538.1 ID=mRNA_H-paniculata_contig16134.3538.1|Name=mRNA_H-paniculata_contig16134.3538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig16134:2180..2819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTACCTCGCAAGAGAGTGGTAACGAGAGGACGACTGTAGCATTATT
GCTATGGTTGGGCCTGTCTCAGATGGTTGTGTGTGGGTTGGTTGAAGCTG
GCCGTGGAGGAATGGCGGAGACCTCCGCAGTGACGATGCCGGCGTTCCGG
GGGGTTAGACTTGGCTACAGAGAGACCTACCACAGTGCAATATCAAATAC
GGTATGTGAAAAGAGGTTCCCCGTTTTCCCTACTGTATGTCGTAAGGGGA
AGAGCACCAGGTTTTTGGCTCGCGGCCTAAACCTCGAAATAGGGTTTCAC
TTGGGCGTTGGGTTCACGCTATGGAATAGATGTATCGCAGGAGGCGAGCT
TGTTTCCCCCATCATATCAACAAGCAAGCTTCGTAGTATATTCAAGTTTT
GTTTTTTGTCCTTGGATTCTTGGATGGAAATTCGAATTAATAATAACACT
AACATGAGCTATAGACGAAAGCTTGAACGAACTCACGATATTTGTTTTGT
TTTTCTGCCTACTTGAATGGTTACCTCGCAAGAGAGTGGTAACGAGAGGA
CGACTGTAGCATTATTGCTATGGTTGGGCCTGTCTCAGATGGTTGTGTGT
GGGTTGGTTGAAGCTGGCCGTGGAGGAATGGCGGAGACCTCCGCAGTGAC
GATGCCGGCGTTCCGGGGGGTTAGACTTGGCTACAGAGAGACCTACCACA
GTGCAATATCAAATACGGTATGTGAAAAGAGGTTCCCCGTTTTCCCTACT
GTATGTCGTAAGGGGAAGAGCACCAGGTTTTTGGCTCGCGGCCTAAACCT
CGAAATAGGGTTTCACTTGGGCGTTGGGTTCACGCTATGGAATAGATGTA
TCGCAGGAGGCGAGCTTGTTTCCCCCATCATATCAACAAGCAAGCTTCGT
AGTATATTCAAGTTTTGTTTTTTGTCCTTGGATTCTTGGATGGAAATTCG
AATTAATAATAACACTAACATGAGCTATAGACGAAAGCTTGAACGAACTC
ACGATATTTGTTTTGTTTTTCTGCCTACTTGA
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