mRNA_H-paniculata_contig16115.3534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16115.3534.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI) HSP 1 Score: 216 bits (550), Expect = 4.450e-57 Identity = 138/399 (34.59%), Postives = 225/399 (56.39%), Query Frame = 2
Query: 1538 VRKVVAAESAADKLMNLRGNVTKILLLDVCGPGDLLPDDPDIMIPKGNKYMLIFFNIAGNTSLINPSNPHYPQKLVNSLVFLHNILDDKGTIIIALEGLDGEHLVVVRGALQKAELLVEQNPIVSLYVHGRSGRIPDTMKNQLQNQASNVVIAHKGSDWVCNG---GGARGGQGARAKQARLEPPRTVESEAIGVVWSYKHPPSRTFLAPNVADWCIKRFTDPGDAVLVSAADRDDLASLVLGEGRKYGALVSNAAKASDVAKDLDTACEIAVERGWFGSLTQSPIMPGADTLPCSVPVSQ------ELVKAQESINDDEDGD---LAHRTIAETFAAPFDLEIKESPKHGKGLFAAKDLK-QEHIDVRLMGNFR*YHGGDQVVEAVHETGVPRYCVVE 2695
VR + A + ++ LR VT + +D+ D + + + + ML+F N+ + SL++ ++ ++L LV L ++L +GT++IA+ + + L+ A+L +E+NP+VS+Y+ G+ GRIP+ +KN L Q +V++AHK +D+ C+G G R +GA A A + PR EA+G V S KHP + TFL+ + AD I RFT PGD VLV+ + + LASLVLG+GR GALV+++ KA + +++ AC A + GWF L ++ ++ TLP +P S + ++Q + +D+ED D L+ +A A +LEIK+S HG GLFA KD++ + + MG + D+++ V+ G PRY V+E
Sbjct: 26 VRTLSKAAAKTEQWAKLRKEVTTVQSVDIFS-SDFDSTTRPLEVDR-DSAMLVFVNLGADPSLLDGTD-EATERLHAGLVALESVLHPRGTVVIAMGSIANFDFPCMEARLKAADLAMEKNPVVSIYLEGQPGRIPERLKNHLTTQGCSVLVAHKTNDFACHGHPLGKRRAARGA-ASSASFKSPRQASFEAVGFVVSDKHPSTATFLSTSTADHLINRFTVPGDCVLVTTFEENPLASLVLGQGRHLGALVADSTKAENAEVEVNEACVTATKHGWFAELNKTEVIMTGSTLPSCIPSSNLSAHAAKQYESQRATDDEEDTDGDVLSALDVARELAGAMELEIKDS-SHGLGLFATKDIEFGGGVPMTAMGAYE-ILTLDEMIAEVNSDGDPRYPVLE 418
BLAST of mRNA_H-paniculata_contig16115.3534.1 vs. uniprot
Match: A0A6H5KBC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC1_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14 Identity = 75/251 (29.88%), Postives = 105/251 (41.83%), Query Frame = 2
Query: 50 LSGLLERTFLGTFTVPVSNLTLTRSGRDLREAGVLQIRQSIENDGWLGSSVIVAALESGTDTQMTQERASTLPLRVIDGNHRCCALQRLDLERGTASKLSVQLHQPMTFTTEKFVAECMNLKAELIVERTLADKIRWYQSFVIAEQKKTPAISINTIATRLKALFKDQGVECPSAPTLKKNIQAVINITKRGLAALKDVTHLEDREPNSLDLRPTA-GLQYKRITLKALLRDEFAKAEAVVQETYIYRIAA 799
++ L +F+G++ VPV NL LT SGR +R GV Q R+SI ++GWL + +I A +G + + +A T LRVIDG HR R A+ KK+ +A +AL ++ GL AL DVT+L +R DL+P+ GL + R+TLKALLR EFA VQ YIYR+A+
Sbjct: 1 MNSRLTESFVGSWKVPVCNLDLTGSGRQVRHQGVAQTRKSIASNGWLDTRII-ACWGAGDEEVFDEGKAKTTTLRVIDGRHRFGIRTR-------------------------------------------------------AQGKKS-------VANATRALKEE------------------------GLNALMDVTYLPERPAGHRDLQPSPDGLHFARVTLKALLRPEFAAMPGEVQAAYIYRMAS 164 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16115.3534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16115.3534.1 >prot_H-paniculata_contig16115.3534.1 ID=prot_H-paniculata_contig16115.3534.1|Name=mRNA_H-paniculata_contig16115.3534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=870bp MSTSIAPEKKGLSGLLERTFLGTFTVPVSNLTLTRSGRDLREAGVLQIRQback to top mRNA from alignment at H-paniculata_contig16115:396..5999+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16115.3534.1 ID=mRNA_H-paniculata_contig16115.3534.1|Name=mRNA_H-paniculata_contig16115.3534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5604bp|location=Sequence derived from alignment at H-paniculata_contig16115:396..5999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16115:396..5999+ >mRNA_H-paniculata_contig16115.3534.1 ID=mRNA_H-paniculata_contig16115.3534.1|Name=mRNA_H-paniculata_contig16115.3534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5220bp|location=Sequence derived from alignment at H-paniculata_contig16115:396..5999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |