prot_H-paniculata_contig1609.3524.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1609.3524.1
Unique Nameprot_H-paniculata_contig1609.3524.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length870
Homology
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 4.970e-100
Identity = 226/406 (55.67%), Postives = 255/406 (62.81%), Query Frame = 0
Query:  479 VDYYNATGGRWEPLLERVVAQGDREIV---RHATKGP-AVWGEVGGRGLGGGVEGVGEGEGEMSSVVRLSCFEEDVKV----YTPFVLQNRTGLQVEFWAHQEKVDSVSRFGRKGAVVGGMSDYPFDTSAASSLSASALDAFTTAGVTSGSGIGXXXXXXRGRHNRHGVSCLMSLRLAT-------NTTEADD--GMECGDGGDVDEAQRFLNLPLKETGRRFLQCVLWTEGVGGVADQGP-GVETRRLRRCDAVWEVSLENGRHMVVLRSALEVVNRCGLWLDVRCSTDAFAA-RGDPGSRREEIVGAVAPGGRLPLPLRWCHAEDIRLRPLRRRHSVVARGQHAAAADGLRRRVAGGQDVDLQSRGVGGGGVVGWGVEQERDEGWRGER-FEFSDCSVLVPATR 864
            VDYYNATGGRWEPLLERVVAQGDR IV   R A + P  V G VGG   G G EG      E  SVVRLSCFEEDVK     Y+PF+LQNRTGL++EFWAHQ+KVDSVSRFG++G VVGGMSD PF TS+            TT G +             GR NR   S L+S+RL T         T ADD  G+  G GGD DE QRFLNLPL E GR FLQC+L  EGV G    G  G   RRL RCDA+WEV LENGRH V LRSALEVVN+CG WL+VRCSTD+FAA RGD    +EE+VGAVAPGGRLPLPLRW  AEDIRLRP         R Q     DG  RR +   +  +  + V    + G       + G +GER +E+SDCSVLVPA R
Sbjct:    2 VDYYNATGGRWEPLLERVVAQGDRAIVTRRRVAAQDPNTVTGVVGG---GQGEEGX--XXXESCSVVRLSCFEEDVKPQPQRYSPFLLQNRTGLKLEFWAHQDKVDSVSRFGKRGTVVGGMSDQPFSTSS------------TTEGQSQ----------QPGRRNRRHASWLLSVRLVTAQSPSDVQQTGADDPPGVS-GVGGDDDEGQRFLNLPLTEAGRSFLQCLLVMEGVPGREAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPW-------PRSQGGGFGDG--RRSSSPSNNSMPKKVVEVHHLAG-------ESGDQGERSYEYSDCSVLVPAAR 363          
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 5.370e-79
Identity = 193/469 (41.15%), Postives = 236/469 (50.32%), Query Frame = 0
Query:    2 GSLTSRPGVSNLPIGGLGQGAGAVDPVTLSLHYCEMDRPLHPQVKDLKCQVEELSCQFTYHDMSLFRAIFSTWSAGIKVPHPGGNRSFLDDNEGEVAHGXXXXXXXXXXXXXXXXXXXXXXXXAHHAE---YAEVQALAALEGMLSDDEGDGVD------------------LNLGDDSEDGDAEEYGRFYKVTFETRQLGLVLIRRNGVPVVEEVSESRAIGGEAAGPFAGDEIVAVAGEATSNMDYDQVVQRILVTPRPLTLVFRRALFEAWWGREYALDLSIWDERHLDGVFLVAGGAGGQAVVGSADAYCPRRNAGMPVTAPRIKPRSGALVISINSIPVSHLKLPDVTKMLDDLA--PKKRGEAAARSTGN--------------------------------------------RSXXXXXXXXXXXXDSSSRRK-------IRLLMREVEAHAWLPNWRNEV 396
            G     PG S    GGLG GAGA DPVTLSLHY E++RPLHP VKDLKCQVEE+ CQ TY DMSLF A+ S WS+G+         S   D   +   G                         + +    + +V AL    GM      D  D                  L+L D+ E G+  + GRFY+V FET QLG+VL+R+NGV VVEEVS    +GG AAGPF GDE+  VAG  TS + YD VV RI  +PRP++L FRRALF +WWGREY LDLS WD   LDG+ LV GGAG QAVVGS D + PR+     V  P ++PR+GALV+S+  IPVSHL +  VT +L+D+A  P +R   A    G                                             +             D S  R        IRL++REVE HAW PNWR+EV
Sbjct: 3211 GGSGRAPGASTP--GGLGGGAGAFDPVTLSLHYSEVERPLHPMVKDLKCQVEEVECQLTYQDMSLFNAVLSGWSSGLL--------SQTVDETADAVTGDTTAAAVVDAAVSPLAAAATSPFVRNSSSKNGHEDVDALRLGIGMPPQHANDSADAXXXXXXXXXXXLMGASALDLEDEEEGGEQIQDGRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSSWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLKGV--PTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASEPSRRSPHARGVAGGERKMVAGGWTETVLANXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRPRRQQHQLLPRDGSRSRSNRGTGDMIRLVLREVEVHAWPPNWRHEV 3667          
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.160e-53
Identity = 128/246 (52.03%), Postives = 149/246 (60.57%), Query Frame = 0
Query:  632 GRHNRHGVSCLMSLRLATNTTEADD---GME-----CGDGGDVDEAQRFLNLPLKETGRRFLQCVLWTEGVGGVADQGP-GVETRRLRRCDAVWEVSLENGRHMVVLRSALEVVNRCGLWLDVRCSTDAFAA-RGDPGSRREEIVGAVAPGGRLPLPLRWCHAEDIRLRPLRRRHSVVARGQHAAAADG---LRRRVAGGQDVDLQSRGVGGGGVVGWGVEQERDEGWRGERFEFSDCSVLVPATR 864
            GR NR   S L+S+RL T  + +D    G E      G GGD DE QRFLNLPL E GR FLQC+L  EGV G    G  G   RRL RCDA+WEV LENGRH V LRSALEVVN+CG WL+VRCSTD+FAA RGD  + +EE+VGAVAPGGRLPLPLRW  AEDIRLRP              +++     + ++V   Q  DL               E   D+G R   +E+SDCSVLVPA R
Sbjct:   20 GRRNRRHASWLLSVRLVTAQSPSDGPQAGAEDPPEVSGVGGDDDEGQRFLNLPLTEVGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDNAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVV--QIHDL--------------AEGSGDQGERS--YEYSDCSVLVPAAR 247          
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.880e-27
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = 0
Query:  160 EDGDAEEYGRFYKVTFETRQLGLVLIRRNGVPVVEEVSESRAIGGEAAGPFAGDEIVAVAGEATSNMDYDQVVQRILVTPRPLTLVFRRALFEAWWGREYALDLSIWDERHLDGVFLVAGGAGGQAVVGSADAYCPRR 297
            E G+  + GRFY+V FET QLG+VL+R+                              VAG  TS + YD VV RI  +P P++L FRRALF++WWGREY LDLS WD   LDG+ LV GGAG QAVVGS D + PR+
Sbjct:   43 EGGEQIQDGRFYEVVFETAQLGIVLLRQ------------------------------VAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK 150          
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.630e-25
Identity = 96/240 (40.00%), Postives = 118/240 (49.17%), Query Frame = 0
Query:  306 PRIKPRSGALVISINSIPVSHLKLPDVTKMLDDLA--PKKRGEAAARST--------------------------------------------GNRSXXXXXXXXXXXXDSSSRRK--------IRLLMREVEAHAWLPNWRNEVQCPGVRVTVIDTREGRDMPLLRAEMGGLDMTHESGPSMTKW-AKDRRASRSSRLHVPGPSAGSDSAS---------DSA---APVSRTAAACEAQ 478
            P ++PR+GALV+S+  IPVSHL +  VT +L+D+A  P +R                                                    G +              S SR +        IRL++REVE HAW PNWR+EVQCPGVRVTVID  EGRDMPLLRAE+G LDMTHESGP M +  A D+RAS    +     +AG  SA          D+A    PVSRTAAAC+AQ
Sbjct: 3946 PTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASEPPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQRPRRQQHQLLPRDGSRSRSRSSRGRGDVIRLVLREVEVHAWPPNWRHEVQCPGVRVTVIDDLEGRDMPLLRAEVGSLDMTHESGPGMARHSAGDKRASLGKSILAT--TAGGTSAXXXXRTAGGVDTALLVVPVSRTAAACDAQ 4183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMF6_ECTSI4.970e-10055.67SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYL2_9PHAE5.370e-7941.15FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L5D8_9PHAE1.160e-5352.03PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FHV4_ECTSI3.880e-2747.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF5_ECTSI1.630e-2540.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 166..253
e-value: 3.7E-5
score: 25.5
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 371..808
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 174..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1609contigH-paniculata_contig1609:4125..24000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1609.3524.1mRNA_H-paniculata_contig1609.3524.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1609 4125..24000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1609.3524.1 ID=prot_H-paniculata_contig1609.3524.1|Name=mRNA_H-paniculata_contig1609.3524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=870bp
TGSLTSRPGVSNLPIGGLGQGAGAVDPVTLSLHYCEMDRPLHPQVKDLKC
QVEELSCQFTYHDMSLFRAIFSTWSAGIKVPHPGGNRSFLDDNEGEVAHG
GGGGAAGAAVSPPKKQSTGQGPPPAHHAEYAEVQALAALEGMLSDDEGDG
VDLNLGDDSEDGDAEEYGRFYKVTFETRQLGLVLIRRNGVPVVEEVSESR
AIGGEAAGPFAGDEIVAVAGEATSNMDYDQVVQRILVTPRPLTLVFRRAL
FEAWWGREYALDLSIWDERHLDGVFLVAGGAGGQAVVGSADAYCPRRNAG
MPVTAPRIKPRSGALVISINSIPVSHLKLPDVTKMLDDLAPKKRGEAAAR
STGNRSGGASAGSSGGCSDSSSRRKIRLLMREVEAHAWLPNWRNEVQCPG
VRVTVIDTREGRDMPLLRAEMGGLDMTHESGPSMTKWAKDRRASRSSRLH
VPGPSAGSDSASDSAAPVSRTAAACEAQVDYYNATGGRWEPLLERVVAQG
DREIVRHATKGPAVWGEVGGRGLGGGVEGVGEGEGEMSSVVRLSCFEEDV
KVYTPFVLQNRTGLQVEFWAHQEKVDSVSRFGRKGAVVGGMSDYPFDTSA
ASSLSASALDAFTTAGVTSGSGIGGGGGGNRGRHNRHGVSCLMSLRLATN
TTEADDGMECGDGGDVDEAQRFLNLPLKETGRRFLQCVLWTEGVGGVADQ
GPGVETRRLRRCDAVWEVSLENGRHMVVLRSALEVVNRCGLWLDVRCSTD
AFAARGDPGSRREEIVGAVAPGGRLPLPLRWCHAEDIRLRPLRRRHSVVA
RGQHAAAADGLRRRVAGGQDVDLQSRGVGGGGVVGWGVEQERDEGWRGER
FEFSDCSVLVPATRLVGEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
IPR036034PDZ_sf