mRNA_H-paniculata_contig1609.3524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI) HSP 1 Score: 349 bits (895), Expect = 4.970e-100 Identity = 226/406 (55.67%), Postives = 255/406 (62.81%), Query Frame = 1
Query: 1435 VDYYNATGGRWEPLLERVVAQGDREIV---RHATKGP-AVWGEVGGRGLGGGVEGVGEGEGEMSSVVRLSCFEEDVKV----YTPFVLQNRTGLQVEFWAHQEKVDSVSRFGRKGAVVGGMSDYPFDTSAASSLSASALDAFTTAGVTSGSGIGXXXXXXRGRHNRHGVSCLMSLRLAT-------NTTEADD--GMECGDGGDVDEAQRFLNLPLKETGRRFLQCVLWTEGVGGVADQGP-GVETRRLRRCDAVWEVSLENGRHMVVLRSALEVVNRCGLWLDVRCSTDAFAA-RGDPGSRREEIVGAVAPGGRLPLPLRWCHAEDIRLRPLRRRHSVVARGQHAAAADGLRRRVAGGQDVDLQSRGVGGGGVVGWGVEQERDEGWRGER-FEFSDCSVLVPATR 2592
VDYYNATGGRWEPLLERVVAQGDR IV R A + P V G VGG G G EG E SVVRLSCFEEDVK Y+PF+LQNRTGL++EFWAHQ+KVDSVSRFG++G VVGGMSD PF TS+ TT G + GR NR S L+S+RL T T ADD G+ G GGD DE QRFLNLPL E GR FLQC+L EGV G G G RRL RCDA+WEV LENGRH V LRSALEVVN+CG WL+VRCSTD+FAA RGD +EE+VGAVAPGGRLPLPLRW AEDIRLRP R Q DG RR + + + + V + G + G +GER +E+SDCSVLVPA R
Sbjct: 2 VDYYNATGGRWEPLLERVVAQGDRAIVTRRRVAAQDPNTVTGVVGG---GQGEEGX--XXXESCSVVRLSCFEEDVKPQPQRYSPFLLQNRTGLKLEFWAHQDKVDSVSRFGKRGTVVGGMSDQPFSTSS------------TTEGQSQ----------QPGRRNRRHASWLLSVRLVTAQSPSDVQQTGADDPPGVS-GVGGDDDEGQRFLNLPLTEAGRSFLQCLLVMEGVPGREAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPW-------PRSQGGGFGDG--RRSSSPSNNSMPKKVVEVHHLAG-------ESGDQGERSYEYSDCSVLVPAAR 363
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 291 bits (745), Expect = 5.370e-79 Identity = 193/469 (41.15%), Postives = 236/469 (50.32%), Query Frame = 1
Query: 4 GSLTSRPGVSNLPIGGLGQGAGAVDPVTLSLHYCEMDRPLHPQVKDLKCQVEELSCQFTYHDMSLFRAIFSTWSAGIKVPHPGGNRSFLDDNEGEVAHGXXXXXXXXXXXXXXXXXXXXXXXXAHHAE---YAEVQALAALEGMLSDDEGDGVD------------------LNLGDDSEDGDAEEYGRFYKVTFETRQLGLVLIRRNGVPVVEEVSESRAIGGEAAGPFAGDEIVAVAGEATSNMDYDQVVQRILVTPRPLTLVFRRALFEAWWGREYALDLSIWDERHLDGVFLVAGGAGGQAVVGSADAYCPRRNAGMPVTAPRIKPRSGALVISINSIPVSHLKLPDVTKMLDDLA--PKKRGEAAARSTGN--------------------------------------------RSXXXXXXXXXXXXDSSSRRK-------IRLLMREVEAHAWLPNWRNEV 1188
G PG S GGLG GAGA DPVTLSLHY E++RPLHP VKDLKCQVEE+ CQ TY DMSLF A+ S WS+G+ S D + G + + + +V AL GM D D L+L D+ E G+ + GRFY+V FET QLG+VL+R+NGV VVEEVS +GG AAGPF GDE+ VAG TS + YD VV RI +PRP++L FRRALF +WWGREY LDLS WD LDG+ LV GGAG QAVVGS D + PR+ V P ++PR+GALV+S+ IPVSHL + VT +L+D+A P +R A G + D S R IRL++REVE HAW PNWR+EV
Sbjct: 3211 GGSGRAPGASTP--GGLGGGAGAFDPVTLSLHYSEVERPLHPMVKDLKCQVEEVECQLTYQDMSLFNAVLSGWSSGLL--------SQTVDETADAVTGDTTAAAVVDAAVSPLAAAATSPFVRNSSSKNGHEDVDALRLGIGMPPQHANDSADAXXXXXXXXXXXLMGASALDLEDEEEGGEQIQDGRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSSWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLKGV--PTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASEPSRRSPHARGVAGGERKMVAGGWTETVLANXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRPRRQQHQLLPRDGSRSRSNRGTGDMIRLVLREVEVHAWPPNWRHEV 3667
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.160e-53 Identity = 128/246 (52.03%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1894 GRHNRHGVSCLMSLRLATNTTEADD---GME-----CGDGGDVDEAQRFLNLPLKETGRRFLQCVLWTEGVGGVADQGP-GVETRRLRRCDAVWEVSLENGRHMVVLRSALEVVNRCGLWLDVRCSTDAFAA-RGDPGSRREEIVGAVAPGGRLPLPLRWCHAEDIRLRPLRRRHSVVARGQHAAAADG---LRRRVAGGQDVDLQSRGVGGGGVVGWGVEQERDEGWRGERFEFSDCSVLVPATR 2592
GR NR S L+S+RL T + +D G E G GGD DE QRFLNLPL E GR FLQC+L EGV G G G RRL RCDA+WEV LENGRH V LRSALEVVN+CG WL+VRCSTD+FAA RGD + +EE+VGAVAPGGRLPLPLRW AEDIRLRP +++ + ++V Q DL E D+G R +E+SDCSVLVPA R
Sbjct: 20 GRRNRRHASWLLSVRLVTAQSPSDGPQAGAEDPPEVSGVGGDDDEGQRFLNLPLTEVGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDNAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVV--QIHDL--------------AEGSGDQGERS--YEYSDCSVLVPAAR 247
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI) HSP 1 Score: 118 bits (295), Expect = 3.880e-27 Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = 1
Query: 478 EDGDAEEYGRFYKVTFETRQLGLVLIRRNGVPVVEEVSESRAIGGEAAGPFAGDEIVAVAGEATSNMDYDQVVQRILVTPRPLTLVFRRALFEAWWGREYALDLSIWDERHLDGVFLVAGGAGGQAVVGSADAYCPRR 891
E G+ + GRFY+V FET QLG+VL+R+ VAG TS + YD VV RI +P P++L FRRALF++WWGREY LDLS WD LDG+ LV GGAG QAVVGS D + PR+
Sbjct: 43 EGGEQIQDGRFYEVVFETAQLGIVLLRQ------------------------------VAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK 150
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 125 bits (315), Expect = 1.630e-25 Identity = 96/240 (40.00%), Postives = 118/240 (49.17%), Query Frame = 1
Query: 916 PRIKPRSGALVISINSIPVSHLKLPDVTKMLDDLA--PKKRGEAAARST--------------------------------------------GNRSXXXXXXXXXXXXDSSSRRK--------IRLLMREVEAHAWLPNWRNEVQCPGVRVTVIDTREGRDMPLLRAEMGGLDMTHESGPSMTKW-AKDRRASRSSRLHVPGPSAGSDSAS---------DSA---APVSRTAAACEAQ 1434
P ++PR+GALV+S+ IPVSHL + VT +L+D+A P +R G + S SR + IRL++REVE HAW PNWR+EVQCPGVRVTVID EGRDMPLLRAE+G LDMTHESGP M + A D+RAS + +AG SA D+A PVSRTAAAC+AQ
Sbjct: 3946 PTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASEPPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQRPRRQQHQLLPRDGSRSRSRSSRGRGDVIRLVLREVEVHAWPPNWRHEVQCPGVRVTVIDDLEGRDMPLLRAEVGSLDMTHESGPGMARHSAGDKRASLGKSILAT--TAGGTSAXXXXRTAGGVDTALLVVPVSRTAAACDAQ 4183 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1609.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1609.3524.1 >prot_H-paniculata_contig1609.3524.1 ID=prot_H-paniculata_contig1609.3524.1|Name=mRNA_H-paniculata_contig1609.3524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=870bp TGSLTSRPGVSNLPIGGLGQGAGAVDPVTLSLHYCEMDRPLHPQVKDLKCback to top mRNA from alignment at H-paniculata_contig1609:4125..24000+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1609.3524.1 ID=mRNA_H-paniculata_contig1609.3524.1|Name=mRNA_H-paniculata_contig1609.3524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19876bp|location=Sequence derived from alignment at H-paniculata_contig1609:4125..24000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1609:4125..24000+ >mRNA_H-paniculata_contig1609.3524.1 ID=mRNA_H-paniculata_contig1609.3524.1|Name=mRNA_H-paniculata_contig1609.3524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5220bp|location=Sequence derived from alignment at H-paniculata_contig1609:4125..24000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |