mRNA_H-paniculata_contig1609.3525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1609.3525.1
Unique NamemRNA_H-paniculata_contig1609.3525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1609.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1609contigH-paniculata_contig1609:15397..17064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1609.3525.1prot_H-paniculata_contig1609.3525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1609 15407..17064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.8774579-UTR-H-paniculata_contig1609:15396..154061622929285.8774579-UTR-H-paniculata_contig1609:15396..15406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1609 15397..15406 +
1691480801.3427267-UTR-H-paniculata_contig1609:15396..154061691480801.3427267-UTR-H-paniculata_contig1609:15396..15406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1609 15397..15406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.8925233-CDS-H-paniculata_contig1609:15406..154511622929285.8925233-CDS-H-paniculata_contig1609:15406..15451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1609 15407..15451 +
1691480801.351344-CDS-H-paniculata_contig1609:15406..154511691480801.351344-CDS-H-paniculata_contig1609:15406..15451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1609 15407..15451 +
1622929285.905297-CDS-H-paniculata_contig1609:16911..170641622929285.905297-CDS-H-paniculata_contig1609:16911..17064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1609 16912..17064 +
1691480801.3587563-CDS-H-paniculata_contig1609:16911..170641691480801.3587563-CDS-H-paniculata_contig1609:16911..17064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1609 16912..17064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1609.3525.1

>prot_H-paniculata_contig1609.3525.1 ID=prot_H-paniculata_contig1609.3525.1|Name=mRNA_H-paniculata_contig1609.3525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MSSVVRLSCFEEDVKINVTHAALDVVLRAIRDWRDFHSTFDDMDAEMDHK
KAAPAAAAAAVATAAA
back to top

mRNA from alignment at H-paniculata_contig1609:15397..17064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1609.3525.1 ID=mRNA_H-paniculata_contig1609.3525.1|Name=mRNA_H-paniculata_contig1609.3525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig1609:15397..17064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGGAGAGATGTCTTCCGTGGTGCGGCTATCCTGCTTTGAGGAAGACG
TGAAGGTGTGTTGACGTTTCAATAGTAGGAGACAATTTGCCCTGTATTAG
CTGTGCAGAGCTCTTGGTGTTTGTTGTTTGTTGTTTATTGTGCCCTCACC
AGATTTGTACAGGCCTTTATGTCTGCTTGTTGGTGTGTTATTTGGCGGGC
GGCCCTTACGACGCAAGCCTGTTTTCCCTTTCTAGAGCTCTACAACAATA
TAATTAATCCAGGAATACGATAGTGTCCCAAACGGCGAAATCAGACCCTG
TTTTTGCACATCAGATTCACCATGTACTAGCTGGATATTTGTTATGTGCG
TGTTTTTTGTGATTTCAACTCTATTTTGGATTTCTTGGATCCTCAGTAGA
CCCGTGGGCTAGCTTTATCGATGTTGTGTTCGTACTAGATATCGCAACAG
CTTTCGTATTGTATATCCGTTGCAGTGTCCCGTCGTTTTTTACCAGACCA
TTATCCGACCTCCGTTGACGCCAGTCTTGAAGGGTATTACCGCAGATAGC
CGCCTACACGTTGCTGGCAAGCACCTTTCCTCTCTAGTGTCAAGCAGTAT
AGGACTCCCCCGCCTTTTACTGATCAGGATGAATGATTGGTTCCCGTGGA
GTGCTTTCAGGGAGAAATGGTATGTGGGTGGCCATGGTGGAATGTATGTA
GCGCTGCGTTTTTGCAACTCCTTCCCCTCTACTCCCCTCTTTGAACATTT
ACTCCTAATCTTCTCGGGCGTTGGAGTCGTATGCATCTGAACTCTATTTA
ATTGCTGTATACACGCGCTCAGTTGGGTTTGTTTCCTTGTTTCGGAACAT
ATTTTCAAGTCTATACTACAGTAACTTATTCAAGCAAATCTCGACGGAGA
GTGCCCTCCATAGTTCAAATATTAATTGGCAAGGTATTGTACATGGATTT
CTTCCCCGCGAGGATCAGAGAGAATGCCTCGGGGGCGATTTTCACAAGTT
TTTTCCACACATGCCCGGCAAAGCAGAAACAGATCATTTCAATATACTTT
TTCTTCTCGATGTCCTATTTTGTTCTCTTCAACCTGTATGTATCCTTTCA
ATGTTTTCAACGCTCTGACACAACGTTTGGCAAGTCACTCTAATCCGAAA
TAAATATGTGACATCTTCCCCACCCGCTCAAAAATCGATAAGTAGGGTAA
AAGAAATGATCGTTTTTCGGCCTAGTTGTTGTCTTTTTTTTATCGAAGTA
GGTCGGTAGTTGTGTGTCAAGTGCTCACTTCTACGGTAGGTGGTGTCTTG
TCTACACACAGAATACACGCGAGTAGTACAGTCCTGCCCTGTTGATTCGG
CCAATACGAAAATCCATATGAAGAATTTGTGGTCCCCTGGGTGATGTAAT
TTTGCTGGTGAGTGTAAACAACTGAAATTTCCTGTCGGCTGCATAACCAA
TTTGCACCCCCTCCCCTCCCCACCCTTGCCCCCTCTATCTTCTTGCCTGC
CGGGGACGCTGACAGATCAACGTTACCCATGCCGCTTTGGACGTTGTCCT
TCGCGCCATCCGAGACTGGCGGGACTTTCACTCCACGTTCGACGATATGG
ATGCCGAGATGGACCACAAGAAAGCGGCTCCAGCAGCAGCAGCGGCGGCG
GTGGCAACGGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1609:15397..17064+

>mRNA_H-paniculata_contig1609.3525.1 ID=mRNA_H-paniculata_contig1609.3525.1|Name=mRNA_H-paniculata_contig1609.3525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1609:15397..17064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCCGTGGTGCGGCTATCCTGCTTTGAGGAAGACGTGAAGATGTC
TTCCGTGGTGCGGCTATCCTGCTTTGAGGAAGACGTGAAGATCAACGTTA
CCCATGCCGCTTTGGACGTTGTCCTTCGCGCCATCCGAGACTGGCGGGAC
TTTCACTCCACGTTCGACGATATGGATGCCGAGATGGACCACAAGAAAGC
GGCTCCAGCAGCAGCAGCGGCGGCGGTGGCAACGGCGGCGGCGATCAACG
TTACCCATGCCGCTTTGGACGTTGTCCTTCGCGCCATCCGAGACTGGCGG
GACTTTCACTCCACGTTCGACGATATGGATGCCGAGATGGACCACAAGAA
AGCGGCTCCAGCAGCAGCAGCGGCGGCGGTGGCAACGGCGGCGGCG
back to top