mRNA_H-paniculata_contig16086.3523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16086.3523.1
Unique NamemRNA_H-paniculata_contig16086.3523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16086.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16086contigH-paniculata_contig16086:4733..5260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.8159397-CDS-H-paniculata_contig16086:4732..48121622929285.8159397-CDS-H-paniculata_contig16086:4732..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16086 4733..4812 +
1691480801.3154304-CDS-H-paniculata_contig16086:4732..48121691480801.3154304-CDS-H-paniculata_contig16086:4732..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16086 4733..4812 +
1622929285.8333905-CDS-H-paniculata_contig16086:5139..52601622929285.8333905-CDS-H-paniculata_contig16086:5139..5260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16086 5140..5260 +
1691480801.3289306-CDS-H-paniculata_contig16086:5139..52601691480801.3289306-CDS-H-paniculata_contig16086:5139..5260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16086 5140..5260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16086.3523.1prot_H-paniculata_contig16086.3523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16086 4733..5260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16086.3523.1

>prot_H-paniculata_contig16086.3523.1 ID=prot_H-paniculata_contig16086.3523.1|Name=mRNA_H-paniculata_contig16086.3523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
DNFCDRSSSCSCWCQQLFCLGERLQVQTENIVIHDGVPLAAGSAAMTDGS
LSTKCAAKLVVVSIAGD
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mRNA from alignment at H-paniculata_contig16086:4733..5260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16086.3523.1 ID=mRNA_H-paniculata_contig16086.3523.1|Name=mRNA_H-paniculata_contig16086.3523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig16086:4733..5260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAACTTCTGCGACCGTTCGTCCTCTTGCTCTTGCTGGTGCCAGCAACT
CTTCTGCCTTGGTGAACGCTTGCAGGTACAGTTTGGGGACGAGTTAATGT
CGTTGTGTTGCTTTCTATGGATGGTAGACTTTGTTGTCATCGTCAGGTAG
GTAGTCAGTCTGCCTCTGTTGCTTGCATGTTTTACTTGTTAGTCTTCCTC
ATAACAACTTGCAGTACACCTGGCGTCAAAGTACAGGAGCTCTGTTACAT
GTAGACTACATGAGACTGCTTCATGTCTTCTACATGAATCACTGCATATT
TATTCACAACAGTGTGTCCTTCATGGATTTTGCTTCACGAGAATGATGAT
TGGCGTGCACGATCTCTAAACATCTACTACGTACCCCTATTCGTTGCCGC
TACGAAGGACCGAGAACATTGTTATCCATGATGGGGTGCCTCTTGCAGCT
GGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTGCCGCCAA
ATTGGTGGTTGTCTCCATTGCAGGAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16086:4733..5260+

>mRNA_H-paniculata_contig16086.3523.1 ID=mRNA_H-paniculata_contig16086.3523.1|Name=mRNA_H-paniculata_contig16086.3523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig16086:4733..5260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAACTTCTGCGACCGTTCGTCCTCTTGCTCTTGCTGGTGCCAGCAACT
CTTCTGCCTTGGTGAACGCTTGCAGGTACAGACAACTTCTGCGACCGTTC
GTCCTCTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCCTTGGTGAACGCT
TGCAGGTACAGACCGAGAACATTGTTATCCATGATGGGGTGCCTCTTGCA
GCTGGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTGCCGC
CAAATTGGTGGTTGTCTCCATTGCAGGAGACGACCGAGAACATTGTTATC
CATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGAG
TCTGTCCACCAAGTGTGCCGCCAAATTGGTGGTTGTCTCCATTGCAGGAG
AC
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