mRNA_H-paniculata_contig16076.3519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16076.3519.1
Unique NamemRNA_H-paniculata_contig16076.3519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 191 bits (486), Expect = 3.240e-54
Identity = 110/302 (36.42%), Postives = 179/302 (59.27%), Query Frame = 1
Query:   19 GLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            G  ++  D C+Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LGL+V ++  +G + I Q +Y   ++K+YG + C+ V T    + LS       E S  E  N  EY+  VGSL+  S+ TR D+ +AV+  A    +   E ++  KRIFR L   ++ G+ +   +N   +  F DADWA D+ DR+ST+GY F++N  A+S  S+KQ  V  S+ EA YVA   A +E +++R+LL  +       MT++ED+ SAI +SK    H R+KHI ++
Sbjct:   42 GFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVET---PVDLSSKLVSAMEDS--ELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIK 333          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A177V4F2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177V4F2_9BASI)

HSP 1 Score: 182 bits (462), Expect = 2.600e-51
Identity = 112/302 (37.09%), Postives = 172/302 (56.95%), Query Frame = 1
Query:   19 GLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPT-CRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGV 918
            G  +S  D+ L+   +    T +++ VYVDDL+IA  ++  +   K  ++ RF+ KDLG    +LG+E++R+    T+T+ QG Y  EVL+R+G   C+   T    KI L+        + G E  ++  YR IVGSLM  + GTR D  +        + DP  ++ +  KR+ R L   LD  +TF G +NG  +  F+DADWA D  DR+ST+G+   +  GA++  ++KQ  V +S+TEA YVAAG AG+ET+ L  LL  +G   +  + +F D+ +AI++SK    H RTKHI +
Sbjct:    2 GFRQSKTDASLFVRTEP---TFVVIVVYVDDLIIAASKDTNLKNLKSQLAARFKGKDLGDAHHLLGIEIKRNREKRTLTMFQGRYAREVLERFGMSNCKPARTPMETKISLTP------RAEGEEKADAQLYRAIVGSLMWLAMGTRVDYGFRDGFLGRFVSDPSVKNLTAAKRVLRDLKGTLDAELTFDG-TNGLRIAAFVDADWAGDKADRKSTSGFAIMMAGGAVTWGAKKQTAVAFSTTEAEYVAAGLAGRETIALTALLRDVGK-LIDGIEIFCDNQAAISVSKNPVLHSRTKHIDI 292          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 189 bits (480), Expect = 4.760e-51
Identity = 108/302 (35.76%), Postives = 178/302 (58.94%), Query Frame = 1
Query:   19 GLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            G  ++  D C+Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LGL+V ++  +  + I Q +Y   ++K+YG + C+ V T    + LS       E S  E  N  E++  VGSL+  S+ TR D+ +AV+  A    +P  E ++  KRIFR L   ++ G+ +   +N   +  F DADWA D+ DR+ST+GY F++N  A+S  S+KQ  V  S+  A YVA   A +E +++R+LL  +       MT++ED+ SAI +SK    H R+KHI ++
Sbjct:  317 GFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVET---PVDLSSKLVSAMEDS--ELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIK 608          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 192 bits (487), Expect = 8.120e-51
Identity = 110/302 (36.42%), Postives = 179/302 (59.27%), Query Frame = 1
Query:   19 GLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            G  ++  D C+Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LGL+V ++  +  + I Q +Y   ++K+YG + C+ V T    + LS       E S  E  N  EY+  VGSL+  S+ TR D+ +AV+  A    +P  E ++  KRIFR L   ++ G+ +   +N   +  F DADWA D+ DR+ST+GY F++N  A+S  S+KQ  V  S+ EA YVA   A +E +++R+LL  +       MT++ED+ SAI +SK    H R+KHI ++
Sbjct:  931 GFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVET---PVDLSSKLVSAIEDS--ELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIK 1222          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 189 bits (479), Expect = 1.370e-50
Identity = 117/306 (38.24%), Postives = 165/306 (53.92%), Query Frame = 1
Query:    7 FVGTGLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            F   G  R   +  ++   D G    ++VAVYVDDL+I +   E V + K ++  +F M DLG    +LG+E+ RD P+ T++ISQ +Y  E+L+R+G  +C+  PT        ++G  +++ S  E  +S  Y+  VGSLM    GT  DVA++V   +     P  E     KR+ R +    DLG+ F G  N   +E FIDADWA+D  +R S  GY+  L    IS  S+KQ     SSTEA Y+AA  A KE ++LR  +  +GF       L+ D+ SAI L K S  H RTKHI VR
Sbjct:  369 FESMGFRRCNSNHAVFIKDDNG--IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPT------PMEVGVSLRKLSEAEV-DSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVR 664          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 186 bits (473), Expect = 5.950e-49
Identity = 112/337 (33.23%), Postives = 178/337 (52.82%), Query Frame = 1
Query:    1 QFFVGTGLDRSTPDSCLYFSRDEGGETN--LLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGL-EEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVRCTEFESGFGKEYWH*NMCRPAINLLT 999
            +F   +G  R+  D C+Y  +   G+ +  L+VAVYVDDL+IA    ++  E K  + +RF M+D   +  +LG++V+RD  N  +TI Q +++  VL R+  +EC+ V T     +  +  A  +E          +Y+  +G L  AS GTR D++ AV   +  M  P ++ +   KR+ R L   LD G+ + G  +G  L   F DADWA D++ R+ST+GY+FK+ +  +S  S++Q +V  S TEA YVA  +A +E ++LR L   + F       +FED+  AI L+K    H RTKHI ++         K+      C P   ++ 
Sbjct:  941 EFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIV-----KLKDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYC-PTDEMIA 1271          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 177 bits (449), Expect = 7.750e-49
Identity = 113/307 (36.81%), Postives = 176/307 (57.33%), Query Frame = 1
Query:    4 FFVGTGLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            +F+    ++   +  L+  ++  G++ L+V++YVDDL+  G     ++EFK ++ + F M DLG +   LG+EV +D     I I+Q  Y  E LK+YG + C  V   +  IV    G  +  + GG++ + T ++ +VGSL    T TR D+ Y+V+  +  ME+P  +     KRI R +      GI +  +  G  L  F+D+D+A DV+DR+ST+GY+F L  GA+S  S+KQ +VT S+TEA +VAA     + ++LR +LG IG+      TLF D++S I LSK    H R+KHI VR
Sbjct:   31 YFMKEKFEKCYYEHTLFVKKE--GDSILIVSLYVDDLIYTGNSLTMLEEFKQSMMKEFAMTDLGKMKFFLGVEVIQDGRG--IFINQQKYAEETLKKYGMEGCNAV---KNPIVP---GNKLSRAGGGDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVR 325          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 175 bits (443), Expect = 1.060e-48
Identity = 108/300 (36.00%), Postives = 159/300 (53.00%), Query Frame = 1
Query:  139 VDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGESG-NSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVRCTEFESGFGKEYWH*NMCRPAINLLTF*RKD*AEYSFR 1035
            + E K  I  +F++ D+G +  VLG+ +RRD   G +TISQ +Y+  +LKR+G ++C+ V T        + G   QE    E+  N+ EY+ ++G L   +T TR D+A AV   +  M  P +E +   KR+ R +   ++ G+ F GKS    L  + DADWA D++ R ST+GY+F++N   +S CS++Q  VT S+TEA YVA   A +E V+LR LL  IG        + ED+  AI LSK    H RTKHI V         G +  + N C     L     K     +F+
Sbjct:    2 LSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVST------PLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQ 295          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 185 bits (470), Expect = 1.510e-48
Identity = 119/310 (38.39%), Postives = 175/310 (56.45%), Query Frame = 1
Query:    4 FFVGTGLDRSTPDSCLYFS--RDEGGETNLLV-AVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTCRGKIVLSDIGAGVQESSGGES-GNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGV 918
            F   +G  +   DSCLY    + + G+ N ++ +++VDD++  +     ++E K  I  +F+++DLG +S +LG+ ++RD  + T+TISQ  Y+  VLKR+  +EC+ V T        + G    E S  E   N  EY+ I+G L   +T TR D+A AV   +  M  P +E +   KRI R +   L+ GITF  K     L  + DADWA D E R ST+GYIF+++   IS CS+KQ  V+ SSTEA Y+A   A +E ++LR LL +IG     S  + ED+ +AI LS+    H RTKHI V
Sbjct:  999 FLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVST------PLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDV 1302          
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 184 bits (467), Expect = 3.760e-48
Identity = 119/304 (39.14%), Postives = 165/304 (54.28%), Query Frame = 1
Query:   19 GLDRSTPDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGV--PTCRGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVHQAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDADWAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGKETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVR 921
            G  RS  ++CLY  + + G +   +AVYVDDL+I    E ++   K  IS +F M D GSLS  LGLE++RD   G +++ Q +YI  +LK YG   CR V  P   G +V     + V+        N T+Y+ ++GSLM  +  +R D+ +AV + + R  +P  E  +  K I R LS  ++L I +  +  G  +  F DADWA D  DR+S +GY F L   A S  S KQ +V  SSTEA YVA   A KE VYLR LL  IG+     M +  D+  A  +SK    H RTKHI ++
Sbjct:  989 GFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKV-------NVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVALTAAAKEAVYLRRLLAEIGWSAGEPMVINGDNMGAQYISKNPVHHKRTKHIDIK 1281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16076.3519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT3.240e-5436.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177V4F2_9BASI2.600e-5137.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT4.760e-5135.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT8.120e-5136.42Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0C9VSW1_SPHS41.370e-5038.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7M6DPI8_9CNID5.950e-4933.23Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A6D2JBX5_9BRAS7.750e-4936.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D5L2_PARCT1.060e-4836.00Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9IUY0_PARCT1.510e-4838.39Retrovirus-related Pol poly from transposon TNT 1-... [more]
W8BWJ0_CERCA3.760e-4839.14Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16076contigH-paniculata_contig16076:1171..2270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score152.1
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog160860.XP_007353053.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size1043
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16076.3519.1prot_H-paniculata_contig16076.3519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16076 1348..2193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.3440835-UTR-H-paniculata_contig16076:1170..13471622929285.3440835-UTR-H-paniculata_contig16076:1170..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16076 1171..1347 +
1691480801.1529331-UTR-H-paniculata_contig16076:1170..13471691480801.1529331-UTR-H-paniculata_contig16076:1170..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16076 1171..1347 +
1622929285.431691-UTR-H-paniculata_contig16076:2193..22701622929285.431691-UTR-H-paniculata_contig16076:2193..2270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16076 2194..2270 +
1691480801.1799695-UTR-H-paniculata_contig16076:2193..22701691480801.1799695-UTR-H-paniculata_contig16076:2193..2270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16076 2194..2270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.36091-CDS-H-paniculata_contig16076:1347..15071622929285.36091-CDS-H-paniculata_contig16076:1347..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16076 1348..1507 +
1691480801.1620376-CDS-H-paniculata_contig16076:1347..15071691480801.1620376-CDS-H-paniculata_contig16076:1347..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16076 1348..1507 +
1622929285.4106133-CDS-H-paniculata_contig16076:1564..21931622929285.4106133-CDS-H-paniculata_contig16076:1564..2193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16076 1565..2193 +
1691480801.1711302-CDS-H-paniculata_contig16076:1564..21931691480801.1711302-CDS-H-paniculata_contig16076:1564..2193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16076 1565..2193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16076.3519.1

>prot_H-paniculata_contig16076.3519.1 ID=prot_H-paniculata_contig16076.3519.1|Name=mRNA_H-paniculata_contig16076.3519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MKDLGSLSRVLGLEVRRDHPNGTITISQGSYICEVLKRYGFDECRGVPTC
RGKIVLSDIGAGVQESSGGESGNSTEYRGIVGSLMCASTGTRRDVAYAVH
QAAHRMEDPCREDFSICKRIFRCLSTVLDLGITFGGKSNGHGLEEFIDAD
WAEDVEDRESTAGYIFKLNDGAISSCSRKQQLVTWSSTEAGYVAAGEAGK
ETVYLRELLGSIGFGCMGSMTLFEDSNSAINLSKGSGAHCRTKHIGVRCT
EFESGFGKEYWH*
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mRNA from alignment at H-paniculata_contig16076:1171..2270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16076.3519.1 ID=mRNA_H-paniculata_contig16076.3519.1|Name=mRNA_H-paniculata_contig16076.3519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-paniculata_contig16076:1171..2270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTTTTTGTTGGGACAGGACTCGACCGTTCCACTCCCGACTCATGCTT GTACTTCTCCCGCGACGAAGGGGGAGAAACAAACCTTCTGGTGGCCGTCT ATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAATTC AAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTC GCGCGTTTTGGGATTAGAAGTACGACGTGACCACCCAAATGGTACCATAA CCATATCTCAGGGTAGCTACATCTGCGAGGTACTAAAAAGATACGGTTTT GACGAGTGTCGAGGAGTACCCACCTGCAGAGGGAAAAGTGAAGATTTCGG CACCCGAGTCGGCCGACAAGCCCTCCGAATAGAGTCACTTGGAGTTGTAC TGTCGGACATAGGCGCAGGAGTACAAGAAAGCAGCGGAGGGGAAAGTGGC AATTCAACTGAATACAGAGGCATAGTAGGATCACTCATGTGTGCCTCGAC AGGAACTAGACGTGATGTAGCATACGCGGTACACCAAGCAGCACATCGTA TGGAGGACCCGTGTCGGGAAGACTTCAGTATATGCAAGCGCATTTTTCGT TGTCTCAGTACTGTGCTTGACCTCGGCATTACGTTCGGCGGTAAGAGTAA TGGTCACGGTCTGGAAGAATTCATTGATGCCGATTGGGCGGAAGATGTCG AGGACCGAGAGTCTACAGCAGGATACATTTTCAAGCTGAACGATGGTGCG ATCAGTTCGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGA GGCAGGGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTA GGGAGCTACTAGGATCGATAGGTTTCGGATGCATGGGGAGCATGACCTTA TTTGAGGACAGTAATTCAGCTATCAATCTCAGTAAAGGATCTGGAGCACA CTGCAGGACAAAGCACATCGGAGTGCGCTGCACGGAGTTCGAGAGTGGAT TCGGGAAGGAATATTGGCATTGAAATATGTGCAGACCGGCGATCAACTTG CTGACATTTTAACGAAAGGACTAAGCAGAGTACAGTTTCAGAGACTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16076:1171..2270+

>mRNA_H-paniculata_contig16076.3519.1 ID=mRNA_H-paniculata_contig16076.3519.1|Name=mRNA_H-paniculata_contig16076.3519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig16076:1171..2270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCGTTTTGGGATTAGAAGTACGACG
TGACCACCCAAATGGTACCATAACCATATCTCAGGGTAGCTACATCTGCG
AGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCTGC
AGAGGGAAAAATGAAAGACTTGGGCTCTCTCTCGCGCGTTTTGGGATTAG
AAGTACGACGTGACCACCCAAATGGTACCATAACCATATCTCAGGGTAGC
TACATCTGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGT
ACCCACCTGCAGAGGGAAAATTGTACTGTCGGACATAGGCGCAGGAGTAC
AAGAAAGCAGCGGAGGGGAAAGTGGCAATTCAACTGAATACAGAGGCATA
GTAGGATCACTCATGTGTGCCTCGACAGGAACTAGACGTGATGTAGCATA
CGCGGTACACCAAGCAGCACATCGTATGGAGGACCCGTGTCGGGAAGACT
TCAGTATATGCAAGCGCATTTTTCGTTGTCTCAGTACTGTGCTTGACCTC
GGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGAATTCAT
TGATGCCGATTGGGCGGAAGATGTCGAGGACCGAGAGTCTACAGCAGGAT
ACATTTTCAAGCTGAACGATGGTGCGATCAGTTCGTGCTCTAGGAAGCAA
CAGTTAGTCACGTGGTCCAGTACAGAGGCAGGGTACGTTGCTGCAGGAGA
AGCGGGAAAGGAGACGGTATATCTTAGGGAGCTACTAGGATCGATAGGTT
TCGGATGCATGGGGAGCATGACCTTATTTGAGGACAGTAATTCAGCTATC
AATCTCAGTAAAGGATCTGGAGCACACTGCAGGACAAAGCACATCGGAGT
GCGCTGCACGGAGTTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAT
TGTACTGTCGGACATAGGCGCAGGAGTACAAGAAAGCAGCGGAGGGGAAA
GTGGCAATTCAACTGAATACAGAGGCATAGTAGGATCACTCATGTGTGCC
TCGACAGGAACTAGACGTGATGTAGCATACGCGGTACACCAAGCAGCACA
TCGTATGGAGGACCCGTGTCGGGAAGACTTCAGTATATGCAAGCGCATTT
TTCGTTGTCTCAGTACTGTGCTTGACCTCGGCATTACGTTCGGCGGTAAG
AGTAATGGTCACGGTCTGGAAGAATTCATTGATGCCGATTGGGCGGAAGA
TGTCGAGGACCGAGAGTCTACAGCAGGATACATTTTCAAGCTGAACGATG
GTGCGATCAGTTCGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGT
ACAGAGGCAGGGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATA
TCTTAGGGAGCTACTAGGATCGATAGGTTTCGGATGCATGGGGAGCATGA
CCTTATTTGAGGACAGTAATTCAGCTATCAATCTCAGTAAAGGATCTGGA
GCACACTGCAGGACAAAGCACATCGGAGTGCGCTGCACGGAGTTCGAGAG
TGGATTCGGGAAGGAATATTGGCATTGA
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