mRNA_H-paniculata_contig1607.3517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1607.3517.1
Unique NamemRNA_H-paniculata_contig1607.3517.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1607.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1607contigH-paniculata_contig1607:16801..17304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size486
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.9094255-UTR-H-paniculata_contig1607:16800..168181622929284.9094255-UTR-H-paniculata_contig1607:16800..16818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1607 16801..16818 +
1691480800.9551105-UTR-H-paniculata_contig1607:16800..168181691480800.9551105-UTR-H-paniculata_contig1607:16800..16818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1607 16801..16818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.9333172-CDS-H-paniculata_contig1607:16818..173041622929284.9333172-CDS-H-paniculata_contig1607:16818..17304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1607 16819..17304 +
1691480800.9649658-CDS-H-paniculata_contig1607:16818..173041691480800.9649658-CDS-H-paniculata_contig1607:16818..17304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1607 16819..17304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1607.3517.1prot_H-paniculata_contig1607.3517.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1607 16819..17304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1607.3517.1

>prot_H-paniculata_contig1607.3517.1 ID=prot_H-paniculata_contig1607.3517.1|Name=mRNA_H-paniculata_contig1607.3517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MAAPFLSQPIASRDNVQRGQVQLDDALAFRMPGSLLGGRPRGAGDSVPGG
GNRGGVAADPGAFQFINSASPTPISSATASRSHVRGGAVMNKNGNGWQKL
GAVKLASTPPGSRQERCRRISCSPRRTRGGDSSSRDCSPSSLSPLSGAGG
SRRGRRGQRGSI
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mRNA from alignment at H-paniculata_contig1607:16801..17304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1607.3517.1 ID=mRNA_H-paniculata_contig1607.3517.1|Name=mRNA_H-paniculata_contig1607.3517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=504bp|location=Sequence derived from alignment at H-paniculata_contig1607:16801..17304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAGGCGGTTGCGCGCATGGCAGCCCCGTTCCTATCCCAACCCATCGC
CTCCAGAGATAACGTCCAACGCGGACAGGTTCAACTAGACGATGCACTAG
CTTTTCGCATGCCAGGTTCGTTGCTCGGGGGACGCCCTCGTGGTGCCGGT
GATAGTGTCCCTGGCGGCGGCAACCGCGGAGGTGTGGCCGCTGATCCTGG
TGCCTTTCAATTTATCAACAGTGCCTCGCCTACTCCGATCAGCTCCGCTA
CAGCGTCAAGGTCCCACGTGCGCGGCGGGGCCGTCATGAACAAAAACGGG
AACGGCTGGCAGAAGCTAGGTGCAGTAAAGCTGGCTTCGACTCCGCCCGG
CTCTCGGCAGGAACGCTGTCGCCGGATCTCGTGCTCGCCCCGGCGTACTC
GCGGCGGAGACAGCTCCTCCAGGGATTGTTCCCCGTCCTCTCTTTCCCCG
CTTAGTGGAGCCGGAGGCTCCAGGCGAGGTAGGCGGGGTCAGCGGGGATC
CATA
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Coding sequence (CDS) from alignment at H-paniculata_contig1607:16801..17304+

>mRNA_H-paniculata_contig1607.3517.1 ID=mRNA_H-paniculata_contig1607.3517.1|Name=mRNA_H-paniculata_contig1607.3517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1607:16801..17304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCCCCGTTCCTATCCCAACCCATCGCCTCCAGAGATAACGTCCA
ACGCGGACAGGTTCAACTAGACGATGCACTAGCTTTTCGCATGCCAGGTT
CGTTGCTCGGGGGACGCCCTCGTGGTGCCGGTGATAGTGTCCCTGGCGGC
GGCAACCGCGGAGGTGTGGCCGCTGATCCTGGTGCCTTTCAATTTATCAA
CAGTGCCTCGCCTACTCCGATCAGCTCCGCTACAGCGTCAAGGTCCCACG
TGCGCGGCGGGGCCGTCATGAACAAAAACGGGAACGGCTGGCAGAAGCTA
GGTGCAGTAAAGCTGGCTTCGACTCCGCCCGGCTCTCGGCAGGAACGCTG
TCGCCGGATCTCGTGCTCGCCCCGGCGTACTCGCGGCGGAGACAGCTCCT
CCAGGGATTGTTCCCCGTCCTCTCTTTCCCCGCTTAGTGGAGCCGGAGGC
TCCAGGCGAGGTAGGCGGGGTCAGCGGGGATCCATAATGGCAGCCCCGTT
CCTATCCCAACCCATCGCCTCCAGAGATAACGTCCAACGCGGACAGGTTC
AACTAGACGATGCACTAGCTTTTCGCATGCCAGGTTCGTTGCTCGGGGGA
CGCCCTCGTGGTGCCGGTGATAGTGTCCCTGGCGGCGGCAACCGCGGAGG
TGTGGCCGCTGATCCTGGTGCCTTTCAATTTATCAACAGTGCCTCGCCTA
CTCCGATCAGCTCCGCTACAGCGTCAAGGTCCCACGTGCGCGGCGGGGCC
GTCATGAACAAAAACGGGAACGGCTGGCAGAAGCTAGGTGCAGTAAAGCT
GGCTTCGACTCCGCCCGGCTCTCGGCAGGAACGCTGTCGCCGGATCTCGT
GCTCGCCCCGGCGTACTCGCGGCGGAGACAGCTCCTCCAGGGATTGTTCC
CCGTCCTCTCTTTCCCCGCTTAGTGGAGCCGGAGGCTCCAGGCGAGGTAG
GCGGGGTCAGCGGGGATCCATA
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