mRNA_H-paniculata_contig1607.3515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1607.3515.1
Unique NamemRNA_H-paniculata_contig1607.3515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1607.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1607contigH-paniculata_contig1607:6335..6699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.8655849-UTR-H-paniculata_contig1607:6334..63961622929284.8655849-UTR-H-paniculata_contig1607:6334..6396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1607 6335..6396 +
1691480800.9145622-UTR-H-paniculata_contig1607:6334..63961691480800.9145622-UTR-H-paniculata_contig1607:6334..6396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1607 6335..6396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.8758278-CDS-H-paniculata_contig1607:6396..66991622929284.8758278-CDS-H-paniculata_contig1607:6396..6699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1607 6397..6699 +
1691480800.9246187-CDS-H-paniculata_contig1607:6396..66991691480800.9246187-CDS-H-paniculata_contig1607:6396..6699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1607 6397..6699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1607.3515.1prot_H-paniculata_contig1607.3515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1607 6397..6699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1607.3515.1

>prot_H-paniculata_contig1607.3515.1 ID=prot_H-paniculata_contig1607.3515.1|Name=mRNA_H-paniculata_contig1607.3515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MILQCRMGILRISWRSDKMWEQVWCSDLNRDVKDWCQRREMEHDRSKVLL
GHVPVTRTFERVSFDLVLEYDSLSLSLTGTWCKYFTPRTNIIHKHNLKDS
P
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mRNA from alignment at H-paniculata_contig1607:6335..6699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1607.3515.1 ID=mRNA_H-paniculata_contig1607.3515.1|Name=mRNA_H-paniculata_contig1607.3515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=365bp|location=Sequence derived from alignment at H-paniculata_contig1607:6335..6699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGACCAACTGGTAGTGTACCGTTCGCCTTGGTGGGGGTAGTGCTGTA
TGTGCACTTTCCATGATTTTGCAATGTCGGATGGGCATTTTACGCATAAG
CTGGCGTTCGGACAAGATGTGGGAGCAAGTTTGGTGTTCTGACTTGAATC
GCGATGTGAAAGACTGGTGTCAGCGACGGGAAATGGAACATGACCGTTCG
AAAGTACTACTCGGGCATGTGCCAGTGACGCGGACATTCGAGCGAGTGTC
ATTCGATCTAGTACTCGAGTACGATAGTCTGTCTCTCTCCCTAACTGGGA
CCTGGTGTAAATATTTCACCCCCCGGACAAATATTATTCACAAGCATAAC
TTAAAGGATTCGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1607:6335..6699+

>mRNA_H-paniculata_contig1607.3515.1 ID=mRNA_H-paniculata_contig1607.3515.1|Name=mRNA_H-paniculata_contig1607.3515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig1607:6335..6699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTGCAATGTCGGATGGGCATTTTACGCATAAGCTGGCGTTCGGA
CAAGATGTGGGAGCAAGTTTGGTGTTCTGACTTGAATCGCGATGTGAAAG
ACTGGTGTCAGCGACGGGAAATGGAACATGACCGTTCGAAAGTACTACTC
GGGCATGTGCCAGTGACGCGGACATTCGAGCGAGTGTCATTCGATCTAGT
ACTCGAGTACGATAGTCTGTCTCTCTCCCTAACTGGGACCTGGTGTAAAT
ATTTCACCCCCCGGACAAATATTATTCACAAGCATAACTTAAAGGATTCG
CCGATGATTTTGCAATGTCGGATGGGCATTTTACGCATAAGCTGGCGTTC
GGACAAGATGTGGGAGCAAGTTTGGTGTTCTGACTTGAATCGCGATGTGA
AAGACTGGTGTCAGCGACGGGAAATGGAACATGACCGTTCGAAAGTACTA
CTCGGGCATGTGCCAGTGACGCGGACATTCGAGCGAGTGTCATTCGATCT
AGTACTCGAGTACGATAGTCTGTCTCTCTCCCTAACTGGGACCTGGTGTA
AATATTTCACCCCCCGGACAAATATTATTCACAAGCATAACTTAAAGGAT
TCGCCG
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