prot_H-paniculata_contig16046.3508.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16046.3508.1
Unique Nameprot_H-paniculata_contig16046.3508.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length146
Homology
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BLAST of mRNA_H-paniculata_contig16046.3508.1 vs. uniprot
Match: A0A182GB28_AEDAL (CCHC-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GB28_AEDAL)

HSP 1 Score: 53.9 bits (128), Expect = 8.000e-6
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 0 
Query:   16 LVRQLDSTRMILNQDSDEYLIEIFHLRDELEYTGENFSEACITDIIVEGLTDDYDQMNFAAER--DPDFSLKDIETTMRNMYANRIARGQISSSRTKGLESGMMASSSAFKGICNYCQKPGHIKSECRKL 143
            L+++L ST +    D +++L+EI  L D L   G    +     +++  L   +D +  A +   D D S+  +++ + + Y  R+ R   +S   K ++S   +  S  + +C++C KPGHIK  CRK 
Sbjct:  101 LLKKLCSTNLSEQGDLEKHLLEIDDLFDRLSAAGTELDKDTQICLLLRSLPPSFDGLVTALDSRSDDDISIDVVKSKLADEYHRRLERDASTSKVEKAMKSVGNSQRSDVR-VCHFCNKPGHIKRNCRKF 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16046.3508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A182GB28_AEDAL8.000e-627.69CCHC-type domain-containing protein n=1 Tax=Aedes ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 126..142
e-value: 0.0079
score: 24.2
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 123..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16046contigH-paniculata_contig16046:2687..3124 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16046.3508.1mRNA_H-paniculata_contig16046.3508.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16046 2687..3148 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16046.3508.1 ID=prot_H-paniculata_contig16046.3508.1|Name=mRNA_H-paniculata_contig16046.3508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MGEKYMNSPMQRRRLLVRQLDSTRMILNQDSDEYLIEIFHLRDELEYTGE
NFSEACITDIIVEGLTDDYDQMNFAAERDPDFSLKDIETTMRNMYANRIA
RGQISSSRTKGLESGMMASSSAFKGICNYCQKPGHIKSECRKLKW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf